BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496217
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60680.1 | Symbols: | Protein of unknown function, DUF584 |... 1035 0.0
> AT5G60680.1 | Symbols: | Protein of unknown function, DUF584
| chr5:24386145-24386976 FORWARD LENGTH=832
Length=832
Score = 1035 bits (560), Expect = 0.0
Identities = 751/834 (90%), Gaps = 49/834 (6%)
Strand=Plus/Plus
Query 1 TAAAAGCAAAGACTGCCTCACGACTAATTCTTCTTCTTCATTACCA-AATAAACAAATCT 59
||||| |||||||| |||||||||||||||||||||||||||| || | |||||||||||
Sbjct 1 TAAAACCAAAGACTCCCTCACGACTAATTCTTCTTCTTCATTAGCAGATTAAACAAATCT 60
Query 60 CAACTTTCGAA---TT-----TTC--C---ATCTCTTCATCAATGGCGACGGGAAAGAGT 106
|||| |||||| || ||| | |||||||| |||||||||||||||||||||
Sbjct 61 CAACATTCGAATTTTTAAAAATTCTTCAAAATCTCTTCTTCAATGGCGACGGGAAAGAGT 120
Query 107 TACTACGCTAGACCTAGCTATCGATTTCTCGGCACCGATCAGCCGTCTTACTTCACCGCT 166
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACTACGCTAGGCCTAGCTATCGATTTCTCGGCACCGATCAGCCGTCTTACTTCACCGCT 180
Query 167 TCCGATTCAGGTCTCGAATTCGACGAATCCGATCTCTACAATCCAATCCACTCCGATTCA 226
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 TCCGATTCAGGTCTCGAATTCGACGAATCCGATCTCTTCAATCCAATCCACTCCGATTCA 240
Query 227 CCAGATTTTCGCCGCAAAATCTCTTCATCAGCCAGATCCGCTAAAAAACCGTCGAATCGT 286
||||||||| |||| |||||||||||||||| |||||||| ||||||| |||||||||||
Sbjct 241 CCAGATTTTTGCCGTAAAATCTCTTCATCAGTCAGATCCGGTAAAAAATCGTCGAATCGT 300
Query 287 CCCTCCGCCG-----T-------AGCAGCGTCGTCGCTTCCTGTAAACGTACCGGACTGG 334
|||||||||| | ||||||||||||||||||||| ||||| |||||||||
Sbjct 301 CCCTCCGCCGCTTCCTCCGCCGCAGCAGCGTCGTCGCTTCCTGTTAACGTGCCGGACTGG 360
Query 335 TCCAAGATTCTCCG-GGAAGAATACCGTGATAACCGCCGGAGAAGCATCGAGGATAACGA 393
|||||||||||||| || ||||||||| |||||||| |||||||||||||||||||||||
Sbjct 361 TCCAAGATTCTCCGCGG-AGAATACCGCGATAACCGACGGAGAAGCATCGAGGATAACGA 419
Query 394 CGACGAT---GATGATAACGAAGACGGAGGCGGTTGGTTGCCGCCGCATGAGTTTCTAGC 450
||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||| ||
Sbjct 420 CGACGATGACGATGATAACGAAGACGGTGGCGATTGGTTACCGCCGCATGAGTTTCTGGC 479
Query 451 GAAGACGAGAATGGCTTCGTTCTCGGTTCATGAAGGAGTTGGGAGGACATTGAAAGGAAG 510
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 GAAGACGAGAATGGCTTCGTTCTCGGTTCATGAAGGAGTAGGGAGGACATTGAAAGGAAG 539
Query 511 AGATCTGAGTAGGGTTCGAAATGCAATTTTTGAAAAAATTGGGTTCCAAGATTAAATATT 570
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 540 AGATCTGAGTAGGGTTCGAAATGCAATTTTTGAAAAATTTGGGTTCCAAGATTAAATATT 599
Query 571 TGGAG--TTTTCC--TTT-CAttt--tttt-GGTTTACTTCAATCATTTTCTCAAGTAAC 622
|||| |||| ||| | ||| |||| || ||||||||||||||||||||||||||
Sbjct 600 TGGAAACTTTTGGAGTTTTCCTTTAATTTTTGGCTTACTTCAATCATTTTCTCAAGTAAC 659
Query 623 TGTCagagaagagagagagCATGTAATATTTCTAGAAATGCCCTCGATTTATCGTTATAT 682
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 TGTCAGAGAAGAGAGAGAGCATGTAATATTTCTAGAAATGCCCTCCATTTATCGTTATAT 719
Query 683 TCCGAAAATCTTACCC-ATGTAAtt-ttttt----ctttt-ac-ttttgag-acattttg 733
|||||||||||||||| |||||||| ||||| ||||| | |||| | ||||||||
Sbjct 720 TCCGAAAATCTTACCCTATGTAATTGTTTTTTTAACTTTTGAGATTTTTATCACATTTTG 779
Query 734 cgtaatgagtaatagattatgttttcttttttttGGAAGAATGTTTGTTTTGTT 787
||||||||||||||||| ||||||||||||||| |||||| |||||||||||||
Sbjct 780 CGTAATGAGTAATAGATAATGTTTTCTTTTTTT-GGAAGAGTGTTTGTTTTGTT 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38278420014
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5