BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496218
Length=3212
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60690.1 | Symbols: REV, IFL, IFL1 | Homeobox-leucine zipper... 4619 0.0
AT4G32880.1 | Symbols: ATHB-8, ATHB8, HB-8 | homeobox gene 8 | ... 139 1e-31
> AT5G60690.1 | Symbols: REV, IFL, IFL1 | Homeobox-leucine zipper
family protein / lipid-binding START domain-containing protein
| chr5:24397023-24402195 FORWARD LENGTH=3502
Length=3502
Score = 4619 bits (2501), Expect = 0.0
Identities = 3021/3256 (93%), Gaps = 99/3256 (3%)
Strand=Plus/Plus
Query 21 TTTCTCTCTCTTCATCTTTTATTCCTCCTCTGTT-CTAAGTTCACCAGAAGC-AA-ACAC 77
||||||||||||| ||||||| | ||||||||| | ||||||| ||||||| || ||||
Sbjct 34 TTTCTCTCTCTTCCTCTTTTA-T--TCCTCTGTTCCAAAGTTCAGCAGAAGCAAACACAC 90
Query 78 ACATCACTTActctctctctctctccttcttcttcactttctcacataacccaa------ 131
|||||||||| || ||||||||| | ||||||||||||||||||||||| ||
Sbjct 91 ACATCACTTA--CTATCTCTCTCT-C--CTTCTTCACTTTCTCACATAACCAAACTCTCT 145
Query 132 ----ctctc--tttttt-aagtctcc-ttG-AATTATAATTGCCCTTTAGTGTTGTTCTT 182
||||| |||||| |||||||| ||| || ||||||||||||||||||||||||
Sbjct 146 CTTTCTCTCTTTTTTTTGAAGTCTCCTTTGAAACTATAATTGCCCTTTAGTGTTGTTC-G 204
Query 183 TTC--AG-CTTC--AA---TTGTA-C--CAA-CCT-CATGTTTCTTCTTCTTCATTGTTC 229
||| || |||| || ||| | | ||| | | || | ||||||||||||||||
Sbjct 205 TTCAGAGTCTTCAAAACTTTTGCAGCTTCAATTGTACCTGGGT-TTCTTCTTCATTGTTC 263
Query 230 CAAAGGTTTCTGTGTCC-TGAA---TTCTGATGTAATGCTTCCTTAAGAGAGTT--CAT- 282
| ||||||||||||||| | || ||||||| ||||||||| ||||||||||| |||
Sbjct 264 CTAAGGTTTCTGTGTCCTTCAATTCTTCTGATATAATGCTTCTTTAAGAGAGTTGACATC 323
Query 283 ATCACTTTCTT-TGG---TCTTCTCTGTTT-TCCCTCAGAAAACCCAACTCTGCAATTTT 337
||||||||||| || |||||||||||| |||| ||||||| ||||||||| ||||||
Sbjct 324 ATCACTTTCTTGGGGTACTCTTCTCTGTTTCTCCC-CAGAAAATCCAACTCTGTAATTTT 382
Query 338 GGGT-GTTATTCTG-TTTTCTC-TTGAAGAATCTTTAAAATTCTCAGATCTTCTGAATCT 394
|||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 383 GGGTCTTTATTCTGTTTTTCTCTTTGAAGAATCTTTAAAATTCTCAGATCTTCTGAATCT 442
Query 395 CTCTTCTCTAAAAC---TTTTCACtttttttttttttttGGTTTCTTCTTTTATTTCCA- 450
||||||| |||||| |||| ||||| |||||| | | | ||||||| || ||
Sbjct 443 CTCTTCTTTAAAACTTTTTTTAACTTTATTTTTTGTACTCG---CTTCTTTGCCTT-CAT 498
Query 451 AATTGTCGTTTCCACATGTCGTTGGTCTTTCGCTACAAGCCACGACCATAGAATCTTC-T 509
|| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 499 TTTTCTCGTATCCACATGTCGTTGGTCTTTCGCTACAAGCCACGACCGTAGAATCTTCTT 558
Query 510 TTGTCTGAAAAGAATTACAATTTACGTTTCTCTTAAGATACGACGACGGACTTTCCgaag 569
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 559 TTGTCTGAAAAGAATTACAATTTACGTTTCTCTTACGAT---ACGACGGACTTTCCGAAG 615
Query 570 aaaactaa-ttaaagag--aa-aagaa-aagcc-----a-aagaagaagctag-agaaac 617
||| ||| |||||||| || ||||| ||||| | ||||||||||||| ||||||
Sbjct 616 -AAATTAATTTAAAGAGAAAAGAAGAAGAAGCCAAAGAAGAAGAAGAAGCTAGAAGAAAC 674
Query 618 agtaaagTTTGAGACTTTGGTGtttttttttGAGGGTCGAGCAAAAATGGAGATGGCGGT 677
||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 675 AGTAAAGTTTGAGAC---------TTTTTTTGAGGGTCGAGCTAAAATGGAGATGGCGGT 725
Query 678 GGCTAACCACCGTGAGAGAAGCAGTGACAGTATGAATAGACATTTAGACAGTAGCGGTAA 737
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 726 GGCTAACCACCGTGAGAGAAGCAGTGACAGTATGAATAGACATTTAGATAGTAGCGGTAA 785
Query 738 GTACGTTAGGTACACGGCTGAGCAAGTGGAGGCTCTTGAGCGTGTCTACGCTGAGTGTCC 797
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 786 GTACGTTAGGTACACAGCTGAGCAAGTCGAGGCTCTTGAGCGTGTCTACGCTGAGTGTCC 845
Query 798 TAAGCCTAGCTCTCTCCGACGACAACAATTGATCCGTGAATGTTCCATTTTGGCCAATAT 857
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TAAGCCTAGCTCTCTCCGTCGACAACAATTGATCCGTGAATGTTCCATTTTGGCCAATAT 905
Query 858 CGAGCCTAAGCAGATCAAAGTCTGGTTTCAGAACCGGAGGTGTCGAGATAAGCAGCGGAA 917
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 906 TGAGCCTAAGCAGATCAAAGTCTGGTTTCAGAACCGCAGGTGTCGAGATAAGCAGAGGAA 965
Query 918 AGAGGCGTCGAGGCTCCAGAGCGTAAATCGGAAGCTTTCTGCGATGAATAAACTGTTGAT 977
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 966 AGAGGCGTCGAGGCTCCAGAGCGTAAACCGGAAGCTCTCTGCGATGAATAAACTGTTGAT 1025
Query 978 GGAGGAGAATGATAGGTTGCAGAAGCAGGTTTCTCAGCTTGTATGCGAAAATGGATATAT 1037
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1026 GGAGGAGAATGATAGGTTGCAGAAGCAGGTTTCTCAGCTTGTCTGCGAAAATGGATATAT 1085
Query 1038 GAAGCAGCAGCTAACTACTGTTGTATGTAACGATCCAAGCTGTGAATCTGTTGTCACAAC 1097
||| ||||||||||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct 1086 GAAACAGCAGCTAACTACTGTTG--T-TAACGATCCAAGCTGTGAATCTGTGGTCACAAC 1142
Query 1098 TCCTCAGCATTCGCTTAGAGATGCGAATAGTCCTGCTGGATTGATCTCAATCGCAGAGGA 1157
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1143 TCCTCAGCATTCGCTTAGAGATGCGAATAGTCCTGCTGGATTGCTCTCAATCGCAGAGGA 1202
Query 1158 GACTTTGGCAGAGTTCCTATCCAAGGCTACAGGAACTGCTGTTGATTGGGTTCAGATGCC 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 GACTTTGGCAGAGTTCCTATCCAAGGCTACAGGAACTGCTGTTGATTGGGTTCAGATGCC 1262
Query 1218 TGGGATGAAGCCTGGTCCGGATTCGGTTGGCATCTTTGCTATTTCGCAAAGATGCAGTGG 1277
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1263 TGGGATGAAGCCTGGTCCGGATTCGGTTGGCATCTTTGCCATTTCGCAAAGATGCAATGG 1322
Query 1278 AGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTATGAAGATTGCAGAGATCCT 1337
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1323 AGTGGCAGCTCGAGCCTGTGGTCTTGTTAGCTTAGAACCTATGAAGATTGCAGAGATCCT 1382
Query 1338 CAAAGATCGGCCATCTTGGTTCCGTGACTGTAGGAGCCTTGAAGTTTTCACTATGTTCCC 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 CAAAGATCGGCCATCTTGGTTCCGTGACTGTAGGAGCCTTGAAGTTTTCACTATGTTCCC 1442
Query 1398 GGCTGGTAATGGTGGCACAATCGAGCTTGTGTATATGCAGACATATGCACCAACGACTTT 1457
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 1443 GGCTGGTAATGGTGGCACAATCGAGCTTGTTTATATGCAGACGTATGCACCAACGACTCT 1502
Query 1458 GGCTCCTGCCCGCGATTTCTGGACCCTGAGATACACTACGAGCCTTGACAATGGCAGTTT 1517
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 1503 GGCTCCTGCCCGCGATTTCTGGACCCTGAGATACACAACGAGCCTCGACAATGGGAGTTT 1562
Query 1518 TGTGGTTTGTGAGAGGTCACTATCTGGCTCTGGAGCTGGGCCAAATGCTGCTTCAGCTTC 1577
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1563 TGTGGTTTGTGAGAGGTCGCTATCTGGCTCTGGAGCTGGGCCTAATGCTGCTTCAGCTTC 1622
Query 1578 TCAGTTTGTGAGAGCAGAAATGCTTTCTAGTGGGTATTTGATAAGACCTTGTGATGGTGG 1637
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1623 TCAGTTTGTGAGAGCAGAAATGCTTTCTAGTGGGTATTTAATAAGGCCTTGTGATGGTGG 1682
Query 1638 CGGTTCAATTATTCACATTGTTGATCACCTTAACCTCGAGGCTTGGAGTGTTCCGGATGT 1697
||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1683 TGGTTCTATTATTCACATTGTCGATCACCTTAATCTTGAGGCTTGGAGTGTTCCGGATGT 1742
Query 1698 GCTTCGACCCCTTTATGAGTCCTCCAAAGTCGTTGCACAAAAAATGACTATTTCCGCGTT 1757
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1743 GCTTCGACCCCTTTATGAGTCATCCAAAGTCGTTGCACAAAAAATGACCATTTCCGCGTT 1802
Query 1758 GCGGTATATCAGGCAATTAGCGCAAGAGACTAATGGTGAAGTAGTGTATGGATTAGGAAG 1817
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1803 GCGGTATATCAGGCAATTAGCCCAAGAGTCTAATGGTGAAGTAGTGTATGGATTAGGAAG 1862
Query 1818 GCAGCCCGCTGTTCTTAGAACCTTTAGCCAAAGATTAAGCCGGGGTTTTAATGATGCGGT 1877
|||||| ||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct 1863 GCAGCCTGCTGTTCTTAGAACCTTTAGCCAAAGATTAAGCAGGGGCTTCAATGATGCGGT 1922
Query 1878 TAATGGCTTTGGGGATGACGGGTGGTCTACAATGCATTGTGATGGCGCGGAAGATATTAT 1937
|||||| ||||| || |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1923 TAATGGGTTTGGTGACGACGGGTGGTCTACGATGCATTGTGATGGAGCGGAAGATATTAT 1982
Query 1938 CGTTGCTATTAACTCTACAAAGCATTTGAATAATATTTCTAATTCTCTCTCGTTCCTTGG 1997
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1983 CGTTGCTATTAACTCTACAAAGCATTTGAATAATATTTCTAATTCTCTTTCGTTCCTTGG 2042
Query 1998 AGGTGTGCTTTGTGCTAAGGCTTCAATGCTTCTCCAAAATGTTCCGCCTGCGGTTTTGAT 2057
||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2043 AGGCGTGCTCTGTGCCAAGGCTTCAATGCTTCTCCAAAATGTTCCTCCTGCGGTTTTGAT 2102
Query 2058 CCGCTTCCTTAGAGAGCATCGATCCGAGTGGGCTGATTTCAATGTTGATGCATATTCCGC 2117
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2103 CCGGTTCCTTAGAGAGCATCGATCTGAGTGGGCTGATTTCAATGTTGATGCATATTCCGC 2162
Query 2118 CGCTACACTTAAAGCTGGTACCTTTGCTTATCCAGGGA-TGAGACCGACAAGGTTCACTG 2176
||||||||||||||||||| |||||||||||| |||| ||||||| ||||| |||||||
Sbjct 2163 TGCTACACTTAAAGCTGGTAGCTTTGCTTATCC-GGGAATGAGACCAACAAGATTCACTG 2221
Query 2177 GGAGTCAGATCATAATGCCACTAGGGCATACAATTGAACACGAAGAAATGCTTGAAGTTG 2236
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 2222 GGAGTCAGATCATAATGCCACTAGGACATACAATTGAACACGAAGAAATGCTAGAAGTTG 2281
Query 2237 TTAGACTAGAAGGCCATTCTCTTGCACAAGAAGATGCATTTATGTCCCGGGATGTCCATC 2296
||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 2282 TTAGACTGGAAGGTCATTCTCTTGCTCAAGAAGATGCATTTATGTCACGGGATGTCCATC 2341
Query 2297 TCCTTCAGATTTGTACCGGGATTGACGAGAATGCCGTTGGAGCTTGTTCTGAACTGATAT 2356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2342 TCCTTCAGATTTGTACCGGGATTGACGAGAATGCCGTTGGAGCTTGTTCTGAACTGATAT 2401
Query 2357 ATGCTCCGATTAATGAGATGTTCCCAGATGATGCTCCACTTGTTCCTTCTGGATTTCGAG 2416
|||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 2402 TTGCTCCGATTAATGAGATGTTCCCGGATGATGCTCCACTTGTTCCCTCTGGATTCCGAG 2461
Query 2417 TCATACCCGTTGATGCTAAAACGGGAGATGCACAAGATCTGTTAACCGCTAATCACCGAA 2476
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 2462 TCATACCCGTTGATGCTAAAACGGGAGATGTACAAGATCTGTTAACCGCTAATCACCGTA 2521
Query 2477 CATTAGACTTAACTTCCAGCCTCGAAGTCGGTCCATCACCAGAGAATGCTTCTGGAAACT 2536
|| ||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2522 CACTAGACTTAACTTCTAGCCTTGAAGTCGGTCCATCACCTGAGAATGCTTCTGGAAACT 2581
Query 2537 CCTCTTCTTCTAGCTCAAGCTCGAGATGTATCCTCACTATCGCGTTTCAATTCCCTTTTG 2596
| | || |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2582 C-T-TT-TTCTAGCTCAAGCTCGAGATGTATTCTCACTATCGCGTTTCAATTCCCTTTTG 2638
Query 2597 AGAACAACTTGCAAGAAAATGTTGCTGGTATGGCTTGTCAGTATGTGAGAAGCGTAATTT 2656
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 2639 AAAACAACTTGCAAGAAAATGTTGCTGGTATGGCTTGTCAGTATGTGAGGAGCGTGATCT 2698
Query 2657 CATCAGTTCAACGTGTTGCAATGGCAATCTCACCGTCTGGGATAAGCCCGAGCCTGGGCT 2716
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 2699 CATCAGTTCAACGTGTTGCAATGGCGATCTCACCGTCTGGGATAAGCCCGAGTCTGGGCT 2758
Query 2717 CCAAATTGTCGCCGGGATCTCCTGAAGCTGTTACTCTTGCCCAGTGGATCTCTCAAAGTT 2776
|||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2759 CCAAATTGTCCCCAGGATCTCCTGAAGCTGTTACTCTTGCTCAGTGGATCTCTCAAAGTT 2818
Query 2777 ACAGTCACCACTTAGGCTCGGAGTTGCTGACGATTGACTCACTTGGAAGCAACGACTCGG 2836
||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 2819 ACAGTCATCACTTAGGCTCGGAGTTGCTGACGATTGATTCACTTGGAAGCGACGACTCGG 2878
Query 2837 TATTAAAACTTCTATGGGATCACCAAGACGCCATCTTGTGTTGCTCGTTAAAGCCACAGC 2896
|| ||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct 2879 TACTAAAACTTCTATGGGATCACCAAGATGCCATCCTGTGTTGCTCATTAAAGCCACAGC 2938
Query 2897 CAGTGTTCATGTTTGCGAACCAAGCTGGTCTAGACATGCTAGAGACAACACTTGTAGCCT 2956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2939 CAGTGTTCATGTTTGCGAACCAAGCTGGTCTAGACATGCTAGAGACAACACTTGTAGCCT 2998
Query 2957 TACAAGACATAACACTCGAAAAGATATTCGATGAATCTGGTCGAAAGGCTCTCTGTTCCG 3016
||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||||| |
Sbjct 2999 TACAAGATATAACACTCGAAAAGATATTCGATGAATCGGGTCGTAAGGCTATCTGTTCGG 3058
Query 3017 ACTTCGCCAAGCTAATGCAACAGGGATTTGCTTGCTTGCCTTCAGGAATCTGTGTGTCGA 3076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3059 ACTTCGCCAAGCTAATGCAACAGGGATTTGCTTGCTTGCCTTCAGGAATCTGTGTGTCAA 3118
Query 3077 CGATGGGAAGACATGTGAGTTATGAACAAGCTGTTGCTTGGAAAGTGTTTGCTGCATCTG 3136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3119 CGATGGGAAGACATGTGAGTTATGAACAAGCTGTTGCTTGGAAAGTGTTTGCTGCATCTG 3178
Query 3137 AAGACAACAACAACAATTTGCATTGTCTTGCCTTCTCCTTTGTAAACTGGTCTTTTGTGT 3196
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3179 AAGAAAACAACAACAATCTGCATTGTCTTGCCTTCTCCTTTGTAAACTGGTCTTTTGTGT 3238
Query 3197 GATTCAATTGACAGAA 3212
||||| ||||||||||
Sbjct 3239 GATTCGATTGACAGAA 3254
> AT4G32880.1 | Symbols: ATHB-8, ATHB8, HB-8 | homeobox gene 8
| chr4:15863452-15868625 REVERSE LENGTH=3023
Length=3023
Score = 139 bits (75), Expect = 1e-31
Identities = 190/245 (78%), Gaps = 10/245 (4%)
Strand=Plus/Plus
Query 1125 TAGTCCTGCTGGATTGA-TCTCAATCGCAGAGGAGACTTTGGCAGAGTTCCTATCCAAGG 1183
||||||||||||||| | | || || || || || ||||| |||||||| | |||||||
Sbjct 842 TAGTCCTGCTGGATT-ATTGTCCATTGCGGATGAAACTTTAACAGAGTTCATTTCCAAGG 900
Query 1184 CTACAGGAACTGCTGTTGATTGGGTTCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGG 1243
| || ||||| ||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct 901 CGACTGGAACCGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCA 960
Query 1244 TTGGCATCTTTGCTATTTCGCAAAGATGCA-GTGGAGTGGCAGCTCGAGCCTGTGGTCTT 1302
| || ||| |||||||||| || |||||| | ||| | || ||||| || || || |||
Sbjct 961 TAGGAATCGTTGCTATTTCTCATGGATGCACG-GGAATCGCTGCTCGTGCTTGCGGCCTT 1019
Query 1303 GTTAGT-TTAGAACCTATGAAGATT-GCAGAGATCCTCAAAG-ATCGGCCATCTTGGTTC 1359
|| || || || || | ||| | || |||||||| |||| || ||| | ||||||
Sbjct 1020 GTGGGTCTT-GATCCCAC-AAGGGTCGCGGAGATCCT-AAAGGATAAGCCTTGTTGGTTG 1076
Query 1360 CGTGA 1364
|||||
Sbjct 1077 CGTGA 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159781713455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5