BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496220 Length=2303 Score E Sequences producing significant alignments: (Bits) Value AT5G60720.1 | Symbols: | Protein of unknown function, DUF547 |... 3533 0.0 > AT5G60720.1 | Symbols: | Protein of unknown function, DUF547 | chr5:24418229-24422234 REVERSE LENGTH=2340 Length=2340 Score = 3533 bits (1913), Expect = 0.0 Identities = 2121/2221 (95%), Gaps = 16/2221 (1%) Strand=Plus/Plus Query 1 CCTCTCACGATCGCTCTCTTCTTCATCTTGAAGCCCAAGCCAAATATATTTCAATATGTC 60 ||||||||||||||||||||||||||||||||||| ||| | ||||||| |||||||||| Sbjct 4 CCTCTCACGATCGCTCTCTTCTTCATCTTGAAGCCAAAG-CTAATATATCTCAATATGTC 62 Query 61 TCATTCTTCTTCTCTTAACCTCCTTCATTACCATTACCTTCCTCCTGATTTCAACCATTC 120 ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 63 TCATTCTTCTTCTGTTAACCTCCTTCATTACCATTACCTTCCTCCTGATTTTAACCACTC 122 Query 121 TCTCCGGTTCTGTCTCACTGCTCCATCTTCGTCTCGCTGGTCTAGTCCCGACGACTACTG 180 | ||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 123 TTTCCGGCTCTGTCTCACTGCTCCATCTTCCTCTCGCTGGTCTAGTCCCGACGATTACTG 182 Query 181 CTCCATCTTAGCCATGCCCACCACAACTCTCCCTGGCTCTATCTCTCCCTTCAATGTCCC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 CTCCATCTTAGCCATGCCCACCACAACTCTCCCTGGCTCTATCTCTCCCTTCAATGTCCC 242 Query 241 TCATAGTGTTAGGACGAAAAAGCTAAATGGGCAGCAGAAAAAGGAAGAAATAGAGAAAGA 300 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 243 TCATAGTGTTAGGACGAAAAAGCCAAATGGGCAGCAGAAAAAGGAAGAAATAGAGAAAGA 302 Query 301 GGTATGGATGTTACGAGAGATGCTGGATCAAGAAGAAAAGACACGTGAGATATTGGAACA 360 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 GGTGTGGATGTTACGAGAGATGCTGGATCAAGAAGAAAAGACACGTGAGATATTGGAACA 362 Query 361 AGTCCAAAAACATCAACTTCCTTCTTCTTCCTCTTCCATTACTCTTCCTGCTTCTCTCCC 420 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 363 AGTCCAAAAACATCAACTTCCTTCTTCTTCCTCTTCCCTTACTCTTCCTGCTTCTCTCCC 422 Query 421 TCCCAAGATGAAGGAACTAATAACGGAACTATCGATAGTAGAAGGAGAAATCTCAAGACT 480 |||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| Sbjct 423 TCCCAAGATGAAGGAACTTATAACGGAACTATCAATCGTAGAAGGAGAAATCTCAAGACT 482 Query 481 AGAAATTCAAATAAGCCATCTTCAGATAAATCTCAAGCAAGAACAAGACGAAACTTTGAA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 AGAAATTCAAATAAGCCATCTTCAGATAAATCTCAAGCAAGAACAAGACGAAACTTTGAA 542 Query 541 ACAAGCAACAACGAA-TTCATCAAGACGAGCATGGCAAACTAGTGAGAGTTACAATGATG 599 |||||| ||||| || ||| |||||||||||||||||||||||||||| |||||| |||| Sbjct 543 ACAAGCTACAAC-AAGTTCTTCAAGACGAGCATGGCAAACTAGTGAGACTTACAAGGATG 601 Query 600 ACAACATAACCCCTTATCAAGCTCCAACATTACCAAAATACCCTAAGCTATCACCTCCAA 659 ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 602 ACAACATAAACCCTTATCAAGCTCCAACATTACCAAAATACCCTAAGCTCCCACCTCCAA 661 Query 660 GCCCTATGGTAAACAAAGGCATAATGAAGAGTGAAAACAACAACACCAAATCTACTACTA 719 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 662 GCCCTATGGTAAACAAAGGCATGATGAAGAGTGAAAACAACAACACCAAATCTACTACTA 721 Query 720 GTCATCATCAAGAGAATGCAACATTTGGTACAAAGACATTACATTTCATCAACAAAGCTA 779 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 722 GTCATCATCAAGAGAATGCAACATTTGGTACAAAGACATTGCATTTCATCAACAAAGCTA 781 Query 780 TAAAAGGTGATTACGCGACAGAAAGCTTCCGCAAGTCTAACGAGAAAGTTGGAATCGTTG 839 |||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| Sbjct 782 TAAAAGGTGATTACGCGATTGAAAGCTTCCGCAAGTCTAACGAGAAAGTTGGAGTTGTTG 841 Query 840 AGAAGGAAAATCATAGGTTGGTACAACATGAAAATAAGTTGCAAGAGAATATGAAAATGA 899 |||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||||| Sbjct 842 AGAAGGAAAATCATCGGTCGGTCCAACATGAAAATAAGGTGCAAGAGAATATGAAAATGA 901 Query 900 AAAAGATTAGGACGATGAAATCACCATCGCCTCTACGTGAACCTAGATATTCCTCTCCTA 959 |||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||| Sbjct 902 AAAAGATTAGGACGATGAAATCGCCTTCGCCTCTACGTGAACCTAGATATACCTCTCCTA 961 Query 960 ACAAGCCTAATAAGGATCGTGTAGCAGCACTTGATGTATCACTAGACATTCCACCAAAAT 1019 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 962 ATAAGCCTAATAAGGATCGTGTAGCAGCACTTGATGCATCACTAGACATTCCACCAAAAT 1021 Query 1020 CTCTATCAAGCACAATCTTGATGGAAGATGGCCAAAACATACAGAAGTGGCACCCAAACA 1079 || ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1022 CTTTATCAAGCACAATCTTGATGGAAGACGGCCAAAACATTCAGAAGTGGCACCCAAACA 1081 Query 1080 AGCTCGCCGAGAGCATCATGAAGTGTCTCAATTTCATCTACGTTCGTCTTCTTAGAACCA 1139 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1082 AGCTCGCCGAGAACATCATGAAGTGTCTCAATTTCATCTACGTTCGTCTTCTTAGAACCA 1141 Query 1140 CAAGAGTCATGGAGCTAGAGAAAACAGGACCCATCTCGAGATCAACTAATTTCTCTTTGA 1199 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1142 CAAGAGTCATGGAGCTAGAGAAAACAGGACCCATCTCGAGATCCACTAATTTCTCTTTGA 1201 Query 1200 GCTCAAGAAGCTTTAGGGTCGACAATGCAACCTCAAGCTTGTCTAAATCCATGAATCTTA 1259 ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1202 GCTCAAGAAGCTTTAGGGTCGACAATGCAACCTCAAGCTTGTCAAAATCGATGAATCTTG 1261 Query 1260 TGTCTTCTAAGGAATCAAGACAACAAGATCCTTACGGAATATTTGATGTAGAAGCATCTT 1319 |||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 1262 TGTCTTATAAGGAATCAAGACAACAAGATCCTTATGGAATATTTGATGTAGAATCATCTT 1321 Query 1320 TGGCTAGAGACATTGGTCCTTACAAGAATCTTGTTATCTTCACTTCGAGTTCTATGGATT 1379 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1322 TGGCAAGAGACATTGGTCCTTACAAGAATCTTGTTATCTTCACTTCGAGTTCTATGGATT 1381 Query 1380 CCAAGTGCATTTCAAGCTCTAGCTCCGTTTCTTTAATCCAGAAACTCAGGGTATTGATGA 1439 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 1382 CCAAGTGCATTTCAAGCTCTAGCTCGGTTTCTTTAATCCAGAAACTCAGGGTACTGATGA 1441 Query 1440 ACAATCTTGAGACCGTGGATCTAAAAGTGTTGAGCCATCAACAAAAGCTAGCGTTTTGGA 1499 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1442 ACAATCTTGAGACTGTGGATCTAAAAGTGTTGAGCCATCAACAAAAGCTAGCGTTTTGGA 1501 Query 1500 TCAACATGTTCAATGCTTGTGTTATGCATGGATATCTACAACATGGAGTTCCAAAAACTG 1559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1502 TCAACATGTTCAATGCTTGTGTTATGCATGGATATCTACAACATGGAGTTCCAAAAACTG 1561 Query 1560 CTGAGAAATTGCAATCTCTTGTTTACAATAAGGCTACAATGAATGTTGGGGGCAAAAACA 1619 |||||| ||||||||||||||| ||||||||||||||||||||||| || |||||||||| Sbjct 1562 CTGAGAGATTGCAATCTCTTGTATACAATAAGGCTACAATGAATGTCGGAGGCAAAAACA 1621 Query 1620 TAAGTGCTCATACCATAGAGCATTGTATCCTAAGGAAGTCTGCAACTTCTACCATGAGTC 1679 ||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| || Sbjct 1622 TAAGTGCTCATACCATAGAGCATTGTATCCTAAGGAAGTCTACATCTTCTACAATGACTC 1681 Query 1680 AGGATCGACACGAAGAAATGATTATTCGTAAACTATATGGCGTAGAAGCAACTGATCCTA 1739 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1682 AGGATCGACACGAAGAAATGATTATTCGTAAACTATATGGCGTAGAAGCAACGGATCCTA 1741 Query 1740 ACATCACATTTGCTCTCTCTTGCGGAACTCGATCTTCTCCTGCGGTGAGGATATACACTG 1799 |||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1742 ACATCACATTTGCTCTATCTTGTGGAACTCGATCTTCTCCTGCAGTGAGGATATACACTG 1801 Query 1800 GAGAAGGAGTGACAACGGAGCTAGAGAAATCGAAGCTGGAGTATCTGCAAGCCTCGGTGG 1859 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 1802 GAGAAGGAGTGACAACGGAGCTAGAGAAATCAAAGCTGGAGTATCTGCAAGCCTCGCTGG 1861 Query 1860 TGGTTACGGCGGCTAAACGGATAGGCTTGCCAGAACTTCTCCTGAAACACGCCGCCGATT 1919 ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| |||||| Sbjct 1862 TGGTTACCGCGGCTAAACGGATAGGCTTGCCGGAACTTCTCCTGAAACATGCCACCGATT 1921 Query 1920 TCGTGGTGC-CGAGGGTGGATGGTGGTGGAAGTATTGGAGAGATGGAGCAGTTAGGACCT 1978 ||||||||| | | || |||||||||| | | ||||||||||||||||||||| || Sbjct 1922 TCGTGGTGCTC-ACGGCGGATGGTGGT--AC-T---GGAGAGATGGAGCAGTTAGGATCT 1974 Query 1979 CTAGTGAAATGGGTTTGCAACCAATTACCAACCTCTGGATCATTAAGAAAATCAATGGTG 2038 | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1975 TTGGTGAAATGGGTTTGCAACCAATTACCAACCTCTGGATCATTGAGAAAATCAATGGTG 2034 Query 2039 GATTGTTTTAAGAATCCAAATTCCAAAGCTTCTTCTTCCTCCTCGGCCGTCGTTGAGAAG 2098 ||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||| Sbjct 2035 GATTGTTTTAAGAATCCAAATTCCAAAGCTTCTTCGTCCTCCTCCGCCGT--T-GAGAAG 2091 Query 2099 ATACCTTATGACTTCGAGTTTCAGTATCTTTTAGCCATTTAGGGTATTACTACTCATTTT 2158 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 2092 ATACCTTATGACTTCGAGTTTCAGTATCTTTTAGCCATTTAGGGTACTACTACTAATTTT 2151 Query 2159 T-ATTCGTTTATTTGTGAAAATGTTGTGTTTTCAAATAAAAATATCAAAGTTTGTATGTT 2217 | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| Sbjct 2152 TTATTCGTTTATTTGTGAAAATGTTGTGTTT-CAAATAAAAATATCAAAATTTGTTTGTT 2210 Query 2218 T 2218 | Sbjct 2211 T 2211 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 114306640965 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5