BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496220
Length=2303
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60720.1 | Symbols: | Protein of unknown function, DUF547 |... 3533 0.0
> AT5G60720.1 | Symbols: | Protein of unknown function, DUF547
| chr5:24418229-24422234 REVERSE LENGTH=2340
Length=2340
Score = 3533 bits (1913), Expect = 0.0
Identities = 2121/2221 (95%), Gaps = 16/2221 (1%)
Strand=Plus/Plus
Query 1 CCTCTCACGATCGCTCTCTTCTTCATCTTGAAGCCCAAGCCAAATATATTTCAATATGTC 60
||||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||||||
Sbjct 4 CCTCTCACGATCGCTCTCTTCTTCATCTTGAAGCCAAAG-CTAATATATCTCAATATGTC 62
Query 61 TCATTCTTCTTCTCTTAACCTCCTTCATTACCATTACCTTCCTCCTGATTTCAACCATTC 120
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 63 TCATTCTTCTTCTGTTAACCTCCTTCATTACCATTACCTTCCTCCTGATTTTAACCACTC 122
Query 121 TCTCCGGTTCTGTCTCACTGCTCCATCTTCGTCTCGCTGGTCTAGTCCCGACGACTACTG 180
| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 123 TTTCCGGCTCTGTCTCACTGCTCCATCTTCCTCTCGCTGGTCTAGTCCCGACGATTACTG 182
Query 181 CTCCATCTTAGCCATGCCCACCACAACTCTCCCTGGCTCTATCTCTCCCTTCAATGTCCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CTCCATCTTAGCCATGCCCACCACAACTCTCCCTGGCTCTATCTCTCCCTTCAATGTCCC 242
Query 241 TCATAGTGTTAGGACGAAAAAGCTAAATGGGCAGCAGAAAAAGGAAGAAATAGAGAAAGA 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 243 TCATAGTGTTAGGACGAAAAAGCCAAATGGGCAGCAGAAAAAGGAAGAAATAGAGAAAGA 302
Query 301 GGTATGGATGTTACGAGAGATGCTGGATCAAGAAGAAAAGACACGTGAGATATTGGAACA 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GGTGTGGATGTTACGAGAGATGCTGGATCAAGAAGAAAAGACACGTGAGATATTGGAACA 362
Query 361 AGTCCAAAAACATCAACTTCCTTCTTCTTCCTCTTCCATTACTCTTCCTGCTTCTCTCCC 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 363 AGTCCAAAAACATCAACTTCCTTCTTCTTCCTCTTCCCTTACTCTTCCTGCTTCTCTCCC 422
Query 421 TCCCAAGATGAAGGAACTAATAACGGAACTATCGATAGTAGAAGGAGAAATCTCAAGACT 480
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 423 TCCCAAGATGAAGGAACTTATAACGGAACTATCAATCGTAGAAGGAGAAATCTCAAGACT 482
Query 481 AGAAATTCAAATAAGCCATCTTCAGATAAATCTCAAGCAAGAACAAGACGAAACTTTGAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AGAAATTCAAATAAGCCATCTTCAGATAAATCTCAAGCAAGAACAAGACGAAACTTTGAA 542
Query 541 ACAAGCAACAACGAA-TTCATCAAGACGAGCATGGCAAACTAGTGAGAGTTACAATGATG 599
|||||| ||||| || ||| |||||||||||||||||||||||||||| |||||| ||||
Sbjct 543 ACAAGCTACAAC-AAGTTCTTCAAGACGAGCATGGCAAACTAGTGAGACTTACAAGGATG 601
Query 600 ACAACATAACCCCTTATCAAGCTCCAACATTACCAAAATACCCTAAGCTATCACCTCCAA 659
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 602 ACAACATAAACCCTTATCAAGCTCCAACATTACCAAAATACCCTAAGCTCCCACCTCCAA 661
Query 660 GCCCTATGGTAAACAAAGGCATAATGAAGAGTGAAAACAACAACACCAAATCTACTACTA 719
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 662 GCCCTATGGTAAACAAAGGCATGATGAAGAGTGAAAACAACAACACCAAATCTACTACTA 721
Query 720 GTCATCATCAAGAGAATGCAACATTTGGTACAAAGACATTACATTTCATCAACAAAGCTA 779
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 722 GTCATCATCAAGAGAATGCAACATTTGGTACAAAGACATTGCATTTCATCAACAAAGCTA 781
Query 780 TAAAAGGTGATTACGCGACAGAAAGCTTCCGCAAGTCTAACGAGAAAGTTGGAATCGTTG 839
|||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 782 TAAAAGGTGATTACGCGATTGAAAGCTTCCGCAAGTCTAACGAGAAAGTTGGAGTTGTTG 841
Query 840 AGAAGGAAAATCATAGGTTGGTACAACATGAAAATAAGTTGCAAGAGAATATGAAAATGA 899
|||||||||||||| ||| ||| ||||||||||||||| |||||||||||||||||||||
Sbjct 842 AGAAGGAAAATCATCGGTCGGTCCAACATGAAAATAAGGTGCAAGAGAATATGAAAATGA 901
Query 900 AAAAGATTAGGACGATGAAATCACCATCGCCTCTACGTGAACCTAGATATTCCTCTCCTA 959
|||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct 902 AAAAGATTAGGACGATGAAATCGCCTTCGCCTCTACGTGAACCTAGATATACCTCTCCTA 961
Query 960 ACAAGCCTAATAAGGATCGTGTAGCAGCACTTGATGTATCACTAGACATTCCACCAAAAT 1019
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 962 ATAAGCCTAATAAGGATCGTGTAGCAGCACTTGATGCATCACTAGACATTCCACCAAAAT 1021
Query 1020 CTCTATCAAGCACAATCTTGATGGAAGATGGCCAAAACATACAGAAGTGGCACCCAAACA 1079
|| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1022 CTTTATCAAGCACAATCTTGATGGAAGACGGCCAAAACATTCAGAAGTGGCACCCAAACA 1081
Query 1080 AGCTCGCCGAGAGCATCATGAAGTGTCTCAATTTCATCTACGTTCGTCTTCTTAGAACCA 1139
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 AGCTCGCCGAGAACATCATGAAGTGTCTCAATTTCATCTACGTTCGTCTTCTTAGAACCA 1141
Query 1140 CAAGAGTCATGGAGCTAGAGAAAACAGGACCCATCTCGAGATCAACTAATTTCTCTTTGA 1199
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1142 CAAGAGTCATGGAGCTAGAGAAAACAGGACCCATCTCGAGATCCACTAATTTCTCTTTGA 1201
Query 1200 GCTCAAGAAGCTTTAGGGTCGACAATGCAACCTCAAGCTTGTCTAAATCCATGAATCTTA 1259
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1202 GCTCAAGAAGCTTTAGGGTCGACAATGCAACCTCAAGCTTGTCAAAATCGATGAATCTTG 1261
Query 1260 TGTCTTCTAAGGAATCAAGACAACAAGATCCTTACGGAATATTTGATGTAGAAGCATCTT 1319
|||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1262 TGTCTTATAAGGAATCAAGACAACAAGATCCTTATGGAATATTTGATGTAGAATCATCTT 1321
Query 1320 TGGCTAGAGACATTGGTCCTTACAAGAATCTTGTTATCTTCACTTCGAGTTCTATGGATT 1379
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TGGCAAGAGACATTGGTCCTTACAAGAATCTTGTTATCTTCACTTCGAGTTCTATGGATT 1381
Query 1380 CCAAGTGCATTTCAAGCTCTAGCTCCGTTTCTTTAATCCAGAAACTCAGGGTATTGATGA 1439
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1382 CCAAGTGCATTTCAAGCTCTAGCTCGGTTTCTTTAATCCAGAAACTCAGGGTACTGATGA 1441
Query 1440 ACAATCTTGAGACCGTGGATCTAAAAGTGTTGAGCCATCAACAAAAGCTAGCGTTTTGGA 1499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 ACAATCTTGAGACTGTGGATCTAAAAGTGTTGAGCCATCAACAAAAGCTAGCGTTTTGGA 1501
Query 1500 TCAACATGTTCAATGCTTGTGTTATGCATGGATATCTACAACATGGAGTTCCAAAAACTG 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 TCAACATGTTCAATGCTTGTGTTATGCATGGATATCTACAACATGGAGTTCCAAAAACTG 1561
Query 1560 CTGAGAAATTGCAATCTCTTGTTTACAATAAGGCTACAATGAATGTTGGGGGCAAAAACA 1619
|||||| ||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 1562 CTGAGAGATTGCAATCTCTTGTATACAATAAGGCTACAATGAATGTCGGAGGCAAAAACA 1621
Query 1620 TAAGTGCTCATACCATAGAGCATTGTATCCTAAGGAAGTCTGCAACTTCTACCATGAGTC 1679
||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| ||
Sbjct 1622 TAAGTGCTCATACCATAGAGCATTGTATCCTAAGGAAGTCTACATCTTCTACAATGACTC 1681
Query 1680 AGGATCGACACGAAGAAATGATTATTCGTAAACTATATGGCGTAGAAGCAACTGATCCTA 1739
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1682 AGGATCGACACGAAGAAATGATTATTCGTAAACTATATGGCGTAGAAGCAACGGATCCTA 1741
Query 1740 ACATCACATTTGCTCTCTCTTGCGGAACTCGATCTTCTCCTGCGGTGAGGATATACACTG 1799
|||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1742 ACATCACATTTGCTCTATCTTGTGGAACTCGATCTTCTCCTGCAGTGAGGATATACACTG 1801
Query 1800 GAGAAGGAGTGACAACGGAGCTAGAGAAATCGAAGCTGGAGTATCTGCAAGCCTCGGTGG 1859
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1802 GAGAAGGAGTGACAACGGAGCTAGAGAAATCAAAGCTGGAGTATCTGCAAGCCTCGCTGG 1861
Query 1860 TGGTTACGGCGGCTAAACGGATAGGCTTGCCAGAACTTCTCCTGAAACACGCCGCCGATT 1919
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 1862 TGGTTACCGCGGCTAAACGGATAGGCTTGCCGGAACTTCTCCTGAAACATGCCACCGATT 1921
Query 1920 TCGTGGTGC-CGAGGGTGGATGGTGGTGGAAGTATTGGAGAGATGGAGCAGTTAGGACCT 1978
||||||||| | | || |||||||||| | | ||||||||||||||||||||| ||
Sbjct 1922 TCGTGGTGCTC-ACGGCGGATGGTGGT--AC-T---GGAGAGATGGAGCAGTTAGGATCT 1974
Query 1979 CTAGTGAAATGGGTTTGCAACCAATTACCAACCTCTGGATCATTAAGAAAATCAATGGTG 2038
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1975 TTGGTGAAATGGGTTTGCAACCAATTACCAACCTCTGGATCATTGAGAAAATCAATGGTG 2034
Query 2039 GATTGTTTTAAGAATCCAAATTCCAAAGCTTCTTCTTCCTCCTCGGCCGTCGTTGAGAAG 2098
||||||||||||||||||||||||||||||||||| |||||||| ||||| | ||||||
Sbjct 2035 GATTGTTTTAAGAATCCAAATTCCAAAGCTTCTTCGTCCTCCTCCGCCGT--T-GAGAAG 2091
Query 2099 ATACCTTATGACTTCGAGTTTCAGTATCTTTTAGCCATTTAGGGTATTACTACTCATTTT 2158
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 2092 ATACCTTATGACTTCGAGTTTCAGTATCTTTTAGCCATTTAGGGTACTACTACTAATTTT 2151
Query 2159 T-ATTCGTTTATTTGTGAAAATGTTGTGTTTTCAAATAAAAATATCAAAGTTTGTATGTT 2217
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 2152 TTATTCGTTTATTTGTGAAAATGTTGTGTTT-CAAATAAAAATATCAAAATTTGTTTGTT 2210
Query 2218 T 2218
|
Sbjct 2211 T 2211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114306640965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5