BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496221
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60730.1 | Symbols: | Anion-transporting ATPase | chr5:2442... 2167 0.0
> AT5G60730.1 | Symbols: | Anion-transporting ATPase | chr5:24422735-24425492
FORWARD LENGTH=1419
Length=1419
Score = 2167 bits (1173), Expect = 0.0
Identities = 1305/1369 (95%), Gaps = 8/1369 (1%)
Strand=Plus/Plus
Query 24 CTTCCATTAACCGGGAAAAGTTGTTCCC-GTCTTCTCTTCTGAATTCGTCAATGGCGTCT 82
|||| |||| |||||||||||| |||| | |||| |||||||||| ||||||||| ||
Sbjct 53 CTTCGATTATCCGGGAAAAGTTCATCCCTTTTTTCTATTCTGAATTCTTCAATGGCGGCT 112
Query 83 TTACTTCTTCTCAATCGTGTTTCGCGAACTACTAGCTCAATCTCTCTCCACCGGGTCGCA 142
|||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 113 TTACTTCTCCTCAATCGTGTTTCTCGAAGTACTAGCTCAATCTCTCTCCACCGGGTCGCA 172
Query 143 GGAGCTCTGGGTTTCAATT-CTCTCAATGCTCAAATTCACGGTGACAGAATCTCTGGAAC 201
||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct 173 GGAACTCTGGGTTTCAATTCCT-TCAATGCTCAAATTCACGGTGACAGAATCTCCGGAAC 231
Query 202 ACTCTTTCGAGTGAGATCATTAGCTACTCTTGCTGAAGGAGCTTCTCGTTTTGATGAGAT 261
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 232 ACTCTTTCGAGTGAGATCATTAGCTACTCTTGCTGAAGGAGCTTCTCATTTTAATGAGAT 291
Query 262 GGTATCTGTGAATCAGCGGAAGTTTTATCTTCTGGGTGGTAAAGGAGGTGTCGGGAAAAC 321
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 292 GGTATCTGTGAATCAGCGGAAGTATTATCTTCTGGGTGGTAAAGGAGGTGTTGGGAAAAC 351
Query 322 GAGCTGTGCTGCTTCTCTTGCGGTTAAGTTTGCTAGCCACGGTCATCCTACCATTGTGGT 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GAGCTGTGCTGCTTCTCTTGCGGTTAAGTTTGCTAGCCACGGTCATCCTACCATTGTGGT 411
Query 382 TTCAACTGACCCTGCTCACTCCTTGAGCGATTCTTTTTCCCAGGACTTGTCAGGAGGAGT 441
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TTCTACTGACCCTGCTCACTCCTTGAGCGATTCTTTTTCCCAGGACTTGTCAGGAGGAGT 471
Query 442 CCTAAAGCCTGTTCAAGGTGTTGATTCTCCACTTCTTGCTCTTGAGATAACACCTGAGAT 501
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 472 CCTAAAGCCCGTTCAAGGTGTTGATTCTCCACTTCTTGCTCTTGAGATCACACCTGAGAT 531
Query 502 AATGAAGGACGAGATTAAACGTCAGACGGGCGATAAAAGTGTTAAAAATATGATGGATAG 561
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 532 AATGAAGGACGAGATAAAACGTCAGACGGGCGATAAAAGTGTGAAAAATATGATGGATAG 591
Query 562 CATGGGGCTCGGAATGTTTGCCGGCGAGTTAGGGGACTTAAATCTTGAAGATATGCTCAA 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CATGGGGCTCGGAATGTTTGCCGGCGAGTTAGGGGACTTAAATCTTGAAGATATGCTCAA 651
Query 622 CGCTGCCTCGCCTGGTATTGACGAAATAGCAGCTATTTCCAAGGTTCTTCAATTTATGGA 681
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CGCTGCCTCTCCTGGTATTGACGAAATAGCAGCTATTTCCAAGGTTCTTCAATTTATGGA 711
Query 682 GGCACCAGAATACAGTAGGTTCACTCGTATAGTTTTTGACACTGCTCCCACGGGACATAC 741
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 712 GGCACCAGAATACAGTAGGTTCACTCGTATAGTTTTTGATACTGCTCCCACGGGGCATAC 771
Query 742 TCTGCGGCTTCTTTCCCTCCCAGACTTCTATGATTCATCCATAAGCAAAATAACTAAGCT 801
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 772 TCTGCGGCTTCTTTCCCTCCCAGACTTCTATGATTCATCCATTAGCAAAATAACTAAGCT 831
Query 802 CAAGAAGAAGATCACTGCAGCAGCTTCAGCCTTTAAGTCGGTCTTTGGCAAAAAAGAGAT 861
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 832 CAAGAAGAAAATCACTGCAGCAGCTTCAGCCTTTAAGTTGGTCTTTGGCAAAAAAGAGAT 891
Query 862 ACAACAACAAGAACTTCCTAACGAGTTAGACCAACTGAAAGAGAGAATGGAGAAAGTTCG 921
||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 892 ACAACAAAAAGAACTTCCTAACGAGTTAGATCAACTGAAAGAGAGGATGGAGAAAGTTCG 951
Query 922 AAATGTTTTCCGTGATGTGAACACTACTGAGTTTGTTATTGTAACCATCCCAACGGTTAT 981
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 952 AAATGTTTTCCGTGATGTGGACACTACCGAGTTTGTTATTGTAACCATCCCAACGGTTAT 1011
Query 982 GGCAATAAACGAGTCTTCAAGGTTACATGCATCTTTAAGAAAAGAAAATGTGCCAGTCCA 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GGCAATAAACGAGTCTTCAAGGTTACATGCATCTTTAAGAAAAGAAAATGTGCCAGTCCA 1071
Query 1042 CAGGCTTATTGTTAATCAGCTTCTACCTCAATCTGAATCCGATTGCAAATTTTGCTCCAT 1101
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1072 CCGGCTTATTGTTAATCAGCTTCTACCTCAATCTGAATCCGATTGCAAATTTTGCTCAAT 1131
Query 1102 GAGACGAAAGGAACAAACGCGAGTTCTTGGACTTATTCAGAACGATACAGAACTTTCTGG 1161
|||||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||
Sbjct 1132 AAGACGAAAGGAACAAACGCGTGTGCTTGGACTTATTCAGAATGATACAGAACTTTCGGG 1191
Query 1162 GTTAAAATTGATCCAATCCCCATTGCTAGACGCAGAAATAAGAGGGGTTCCCGCACTTAA 1221
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1192 GTTAAAATTGATCCAATCGCCATTGCTAGACGCAGAGATAAGAGGGGTTCCCGCACTTAA 1251
Query 1222 GTTCATGGGTGATCTCATTTGGAAATAAGAAAAATAAtttttttCAACTTTCGTTTCCAG 1281
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1252 GTTCATGGGTGATCTCATTTGGAAATAAGATTT-T--TTTTTTTCAACTTTCGTTTCCAG 1308
Query 1282 TGCATAACAATAAGTTAAATTCTTCTGCTGTCCTAAGATCTGAAAA-TGTTGCTGATGAA 1340
|||||||||||||||||||||||| |||||||||||||||| |||| | ||||||||||
Sbjct 1309 TGCATAACAATAAGTTAAATTCTTTTGCTGTCCTAAGATCTAAAAAGTCTTGCTGATGAG 1368
Query 1341 AGGAAAACAAATTAACAATGTTATTAATTTTAAGCCAAGAAAGTAATGG 1389
| ||| |||| || |||||||||||| ||||||| |||||||||||||
Sbjct 1369 ATTAAA-CAAAATACCAATGTTATTAACTTTAAGCAAAGAAAGTAATGG 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5