BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496223
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60750.1 | Symbols: | CAAX amino terminal protease family p... 2078 0.0
> AT5G60750.1 | Symbols: | CAAX amino terminal protease family
protein | chr5:24430891-24433360 FORWARD LENGTH=1386
Length=1386
Score = 2078 bits (1125), Expect = 0.0
Identities = 1298/1376 (94%), Gaps = 33/1376 (2%)
Strand=Plus/Plus
Query 1 GTCACGAAAACCCCCAAATCCTCAATTTTGAGATTAATTAGGGTTTTCGATTTCTGTGAT 60
||||||||||||||||||| | | | ||||||||||||||||||||||||| ||||
Sbjct 8 GTCACGAAAACCCCCAAAT-C-C-A----CAGATTAATTAGGGTTTTCGATTTCTCTGAT 60
Query 61 GAAACTAAGAAGAAtctctcattagggttctcaattc-ttcttcagagggatttctcatc 119
|||||| |||||||||||||||||||| | || ||| ||||||||||||||||||||
Sbjct 61 GAAACTGAGAAGAATCTCTCATTAGGG-T-TC--TTCATTCTTCAGAGGGATTTCTCA-- 114
Query 120 tctctctctcattGAGCGTGCT-AAGCTGAAATCTGAGTTTGATAATTGGAACTCAGA-T 177
| ||||||||||||||| |||| |||||||||||||||||||| |||||||| ||||| |
Sbjct 115 TATCTCTCTCATTGAGCTTGCTAAAGCTGAAATCTGAGTTTGA-AATTGGAATTCAGATT 173
Query 178 ----TCCCATGTTGACCTCTCCTTGCTCTTCTTCGTCTCTCCTTC-GCCATCGCCCAGCT 232
|||||||||||||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 174 CCCATCCCATGTTGACCTCTTCTTGCTCTTCTTCGTCTCTCC-TCTGCCATCGCCCAGCT 232
Query 233 CTCTCTAGTTCGCGTTCCAAGTTTAGGGTTCCTCGTCGAACTGTCTTCTCTCCTGCTCTT 292
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 233 CTCTCTAGTTCGCGTTCCAAGTTTAGGGTTCCTTGTCGAACTGTTTTCTCTCCTGCTCTT 292
Query 293 ACCAAGATTTCCCCTTTAACTGCTTCTTCACCTTCTAAGTCCGCCAAGCACAAATGGAAG 352
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 293 ACCAAGATTTCCCCTTTAACTGCTTCTTCACCTTCTAAGTCCGCCAAGCATAAATGGAAG 352
Query 353 ATTTTTTGCTTTAGAAATGAGGATTCTGCTCCTGAGAATTCGGAGCATCTCGTGCCTGAG 412
||||| || ||||||||||| ||||||||||| |||||| |||||||| | |||||||||
Sbjct 353 ATTTTGTGTTTTAGAAATGAAGATTCTGCTCCCGAGAATCCGGAGCATTTTGTGCCTGAG 412
Query 413 GAATTAGTTAAGCCAGATCAAGATTCTCCATGTACAGATAAAAAAGATTGGAAGGCAACT 472
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 413 GAATTAGTTAAGCCAGATCAAGATTCTCCATGTACAGATAAAACAGATTGGAAGGCAACT 472
Query 473 CTTCAAAAGGCTGCAGATACAGTTTTGAAAGCCATTGGGACTCGTTGGAAGGTACCATGG 532
||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 473 TTTCAAAAGGCTGCAGATGCAGTTTTGAAGGCCATTGGGACTCGTTGGAAGGTACCATGG 532
Query 533 ACAGTCGAGACCATTGTGCAGGTAATGCTTCTGTGGGTAGCCGCTTTCTGGTTCATTGGA 592
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 ACTGTCGAGACCATTGTGCAGGTAATGCTTCTGTGGGTAGCCGCTTTCTGGTTCATTGGT 592
Query 593 TCATGGATGATCCCTTTCATGGCTCATATATCAGGTTTCCATAAAGAATCCCTAACATTT 652
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 593 TCATGGATGATCCCATTCATGGCTCATATATCAGGTTTCCACAAAGAATCCCTAACATTT 652
Query 653 AGAGGCCAAGCTTTGTTCAGTCTGATAACCGATGTAACAGAAGGCCTAGCCGGGATTGCT 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AGAGGCCAAGCTTTGTTCAGTCTGATAACCGATGTAACAGAAGGCCTAGCCGGGATTGCT 712
Query 713 ATACTCCACCGTTGCCTCTCCATGTTTCGTCCACTTGCAAGCGATTGGTTCCGCTTTACC 772
|| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 713 ATCCTCCACCGTTGCCTCTCCATGTTCCGTCCACTTGCAAGTGATTGGTTCCGCTTTACC 772
Query 773 CTTAAAGGAAACTGGCAACTAGATGTTATCATAGGCTGTTTCATGTTCCCTTTCGTTAAC 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 CTTAAAGGAAACTGGCAACTAGATGTTATCATAGGCTGTTTCATGTTCCCTTTCGTTAAC 832
Query 833 CGTCTCTCCCAATTAAACCTCAACCTCTTGCCACTCCCACCAACCTCAAGTCCGGTCTCA 892
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 833 CGGCTCTCCCAATTAAACCTAAACCTCTTGCCACTCCCACCAACCTCAAGTCCAGTCTCA 892
Query 893 CTCTCAAGTGTCGAGCAGTCGATAATGGCTAGAGACCCTGTGGCAATGGCACTGTATGCA 952
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 893 CTCTCAAGTGTCGAGCAGTCTATAATGGCTAGAGACCCTGTGGCAATGGCACTGTATGCA 952
Query 953 GTTGTGGTATCAATTTGTGCACCGGTTTGGGAAGAGATAGTGTTCAGAGGGTTCTTGTTA 1012
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GTTGTAGTATCAATTTGTGCACCGGTTTGGGAAGAGATAGTGTTCAGAGGGTTCTTGTTA 1012
Query 1013 CCGTCTCTGACTAGGTACATGCCGGTTTGGTGTGCGATTCTTGTGAGTTC-AGTTGCGTT 1071
|||||||| |||||||||||||| |||||||||||||||||||||||||| | |||| ||
Sbjct 1013 CCGTCTCTAACTAGGTACATGCCAGTTTGGTGTGCGATTCTTGTGAGTTCGA-TTGCATT 1071
Query 1072 TGCTTTAGCACATTTCAATGTGCAGAGGATGTTGCCATTGGTGTTCCTTGGAGTGGTTTT 1131
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1072 TGCTTTGGCACATTTCAATGTGCAGAGGATGTTACCATTGGTGTTCCTTGGAGTGGTATT 1131
Query 1132 GGGTTTGATATTCGCAAGGTCAAGGAACTTGTTACCTTCAATGCTATTGCATAGCTTGTG 1191
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1132 GGGTTTGATATTCGCAAGGTCAAGGAACTTGTTACCTTCAATGCTGTTGCATAGCTTGTG 1191
Query 1192 GAATGGCTTTGTATTCATGGAATTGATGCGATGATGATGACTATCTTTTGTAGGTGTCTT 1251
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1192 GAACGGCTTTGTATTCATGGAATTGATGCGATGATGA---CTATCTTTTGTAGGTGTCTT 1248
Query 1252 GTTTCTTATTCTTCTTGTAATTGATTCAAATTATGATTTTAGCtttttatttttttA-A- 1309
|||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |
Sbjct 1249 GTTTCTTATTCTTCTTGTAATTGATTCAAAGTATGATGTTAGCTTTT-ATTTTTTTATAA 1307
Query 1310 TAAATGGACAGTTCAATTGTACAAAGATaaaaacaaaaatggt-aaaaaGGAAATT 1364
|||||||||||||||||||||||||||||||| |||||| ||| |||||| |||||
Sbjct 1308 TAAATGGACAGTTCAATTGTACAAAGATAAAACCAAAAAAGGTCAAAAAG-AAATT 1362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67168329210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5