BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496228
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60800.2 | Symbols: | Heavy metal transport/detoxification ... 1393 0.0
> AT5G60800.2 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr5:24460783-24462541 REVERSE LENGTH=1025
Length=1025
Score = 1393 bits (754), Expect = 0.0
Identities = 876/931 (94%), Gaps = 23/931 (2%)
Strand=Plus/Plus
Query 1 TCCCATTTCCTCCGACTCTTTCTCTACCCA----CTTCCTTCTCCCACTACTCTCTCACT 56
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 6 TCCCATTTCCTCCGACTCTGTCTCTACCCACTTCCTTCCTTCTCCCACTACTCTCTCACT 65
Query 57 AACCGAGTCATCATGGGCgagaagaagaacgatggagataacaagaagaaaggaggagat 116
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 66 AACCGATTCATCATGGGCGAGAAGAAGAACGAAGGAGATAACAAGAAGAAAGGAGGAGAT 125
Query 117 aacaagaagaagaacgaaacGCCGTCAATCACCGTCGTTTTGAAGGTCGACATGCATTGT 176
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 126 AACAAGAAGAAGAACGAAACGCCTTCCATCACCGTCGTTTTGAAGGTCGACATGCATTGT 185
Query 177 GAAGGTTGTGCTTCTCGAATCGTCAAATGTGTTCGTTCTTTCCAAGGTGTTGAGACGGTG 236
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 186 GAAGGTTGTGCTTCTCGAATCGTCAAATGTGTTCGATCTTTCCAAGGTGTTGAGACTGTG 245
Query 237 AAATCGGAGTCTGCGACAGGGAAACTTACGGTGACCGGAGCTTTAGATCCGGTGAAACTC 296
||||||||||| || |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 246 AAATCGGAGTCGGCTACAGGGAAACTTACGGTGACCGGAGCATTAGATCCGGTGAAGTTA 305
Query 297 AGGGAGAAACTTGAAGAGAAGACAAAGAAGAAAGTCGATTTGGTTTCTCCTCAACCcaaa 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 306 AGGGAGAAACTTGAAGAGAAGACAAAGAAGAAAGTCGATTTGGTTTCTCCTCAACCAAAA 365
Query 357 aaggaaaaagagaaagagaacaataaggacaaaaacaaaaacgatgaagacaaaaaaaaa 416
|||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 366 AAGGAAAAAGAGAAAGAG-------A--ACAAAAACAAAAACGATGAAGACAAAAAAAAA 416
Query 417 TCAGAGGAGAAGAAGAAACCAGACAACAACGAGAAAAAACCCAAAGAGACTCCGGTAACA 476
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 417 TCAGAGGAGAAGAAGAAACCAGACAACAATGACAAAAAACCCAAAGAGACTCCGGTAACA 476
Query 477 ACGGCGGTATTGAAGCTGAACTTCCATTGTCAAGGTTGTATCGGGAAAATCCAAAAGACT 536
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 ACGGCGGTGTTGAAGCTGAACTTCCATTGTCAAGGTTGTATCGGGAAAATCCAAAAGACT 536
Query 537 GTCACAAAAACCAAAGGTGTTAATGGTTTAACGATGGATAAAGAGAAGAATTTGGTGACG 596
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 537 GTCACAAAAACCAAAGGTGTTAATGGTTTAACAATGGACAAAGAGAAGAATTTGCTGACG 596
Query 597 GTTAAAGGAACAATGGATGTTAAAAAACTCGTTGAGAGTTTGAGTGAGAAGCTGAAACGT 656
|||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct 597 GTTAAAGGAACAATGGATGTTAAAAAGCTCGTTGAGATTTTGAGTGAGAAGCTCAAACGT 656
Query 657 -CAGGTGGAGATTGTGCCGCCGAAGAAAGAGAAAGA-AAA-----TGGTAACGAAACTGG 709
| ||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 657 GC-GGTGGAGATTGTGCCGCCGAAGAAAGAGAAAGATAAAGAGAATGGTAACGAAAATGG 715
Query 710 CGAGAAGAAGAAAGGTGGCGGCGGAGACGGTGGTGG-AAAGGAGAAATCTGGTAACAAAG 768
|||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||||
Sbjct 716 CGAGAAGAAGAAAGGTGGCGGCGGAGACGGTGGTGGGAAAG-AGAAAACCGGTAACAAAG 774
Query 769 GCGGTGGTGAGGGAGTGAATATGATGGAGTACATGGCGGCTCAGCCTGCTTACGGGTACG 828
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 775 GCGGTGGTGAGGGAGTGAATATGATGGAGTACATGGCGGCTCAGCCAGCTTACGGTTATG 834
Query 829 GGTATTATCCGGGTGGGCCTTATGGGTATCCGATTCAAGCCCACGCGCCGCAGATTTTTA 888
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 835 GGTATTACCCGGGTGGGCCTTATGGATATCCGATTCAGGCCCACGCGCCGCAGATTTTTA 894
Query 889 GCGATGAGAATCCGAATGCTTGTGTTGTTAT 919
|||||||||||||||||||||||||||||||
Sbjct 895 GCGATGAGAATCCGAATGCTTGTGTTGTTAT 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56626214760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5