BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496236
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60870.1 | Symbols: | Regulator of chromosome condensation ... 2043 0.0
> AT5G60870.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family protein | chr5:24485655-24487784 REVERSE LENGTH=1484
Length=1484
Score = 2043 bits (1106), Expect = 0.0
Identities = 1278/1362 (94%), Gaps = 8/1362 (1%)
Strand=Plus/Plus
Query 1 CAACAATGGCAGCGTTAAGCAACCGCCTACGTA-TCTTCACGCGCCGCTTCTCCTCCACC 59
|||||||||||||||||||| ||||| |||||| | ||||| ||||||||||||||||||
Sbjct 9 CAACAATGGCAGCGTTAAGCCACCGCTTACGTAGT-TTCACACGCCGCTTCTCCTCCACC 67
Query 60 CGGACAACTCAAAGAAGTAGCGGAGGAGCTACCACCAAGGTGCCCACACTCTACACAAGC 119
||||| ||||||||||| |||||||||| | ||||||||| || | ||||||||||||
Sbjct 68 CGGACCACTCAAAGAAGCGGCGGAGGAGCCAACACCAAGGTACCTATTCTCTACACAAGC 127
Query 120 CCAGATATCGACTCGGATCCCATCACTCTCCAGCTCTTCTCGTGGGGACGAGGCGCATCA 179
||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||| |||
Sbjct 128 CCAGACATCGACTCCGATCCCGTCACTCTCCAGCTCTTCTCGTGGGGACGTGGCGCGTCA 187
Query 180 GGTCAACTCGGCGGCGGAATCGAGGAGATTCGAATGTATCCGTCTCCGGTCGCTAATCTT 239
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 188 GGTCAGCTCGGCGGCGGAATCGAGGAGATTCGAATGTATCCGTCTCCAGTCGCTAATCTT 247
Query 240 CTCCTTCGCTCCGATCAATCCTTCTCTCTCGCCCAAACTCCTGGAAGAATCGACGCCGAT 299
||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 248 CTCTTTCGCTCTGATCAATCCTTCTCTCTCGCTCAAACTCCTGGAAGAATCGACGCAGAT 307
Query 300 TCATCGAGTTTCCCG-ATTGGAATCTCTTGCGGCTTTTTCCATTCGGGTCTAACCATCGG 358
|| || ||||| || |||||||||||||||||||| |||||||| ||| |||| || |
Sbjct 308 TCTTCCAGTTT-TCGAATTGGAATCTCTTGCGGCTTGTTCCATTCTGGTTTAACTATAGA 366
Query 359 TGGAGATCTATGGATTTGGGGCAAAGGTGACGGAGGTAGGCTAGGGTTTGGCCAAGAGAA 418
|||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct 367 CGGAGATCTATGGATTTGGGGGAAAGGTGACGGAGGAAGGTTAGGGTTTGGCCAAGAGAA 426
Query 419 TTCGGTGTTCGTCCCCAATTTAAACCCGCTTTTCGAGGAACATTCGATTCGATGTATTGC 478
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 427 TTCGGTTTTCGTCCCCAATTTAAATCCGCTTTTTGAGGAACATTCGATTCGATGTATAGC 486
Query 479 TCTTGGTGGTTTGCATTCAGTAGCTTTAACACATCAAGGAGAGGTATTCACTTGGGGTTA 538
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 487 TCTTGGTGGTTTGCATTCAGTAGCTTTAACACATCAAGGAGATGTATTCACTTGGGGTTA 546
Query 539 TGGTGGTTTTGGAGCGCTTGGACATAAGGTTTACACTAGAGAACTCGTTCCTCGACGTGT 598
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 547 TGGTGGTTTTGGAGCGCTTGGTCATAAGGTTTACACTAGAGAACTCGTTCCTCGACGTGT 606
Query 599 TGACGGCTCTTGGGATTGCAAAATCTCTGCCATTGCTACCAGTGGAACTCATACCGCTGC 658
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 607 TGACGACTCTTGGGATTGCAAAATCTCTGCCATTGCTACTAGTGGAACTCATACCGCTGC 666
Query 659 TATTACCGAATCAGGAGAGCTGTATATGTGGGGAAGAGAAGAAGGGGATGGTAGATTAGG 718
|||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 667 TATTACTGAATCAGGGGAGCTTTATATGTGGGGAAGAGAAGAAGGAGATGGTAGATTAGG 726
Query 719 ACTTGGGCCAGGTCGAGGACCAAACGAAGGTGGTGGGCTTAGTGTTCCTTCAAAGGTCAA 778
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 ACTCGGGCCAGGCCGAGGACCAAACGAAGGTGGTGGGCTTAGTGTTCCTTCAAAGGTCAA 786
Query 779 AGCTTTAACAGTTCCCGTAGCCTCTGTCTCATGTGGTGGTTTTTTCACAATGGCTCTTAC 838
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 AGCTTTAACAGTTCCTGTAGCCTCTGTCTCATGTGGTGGTTTTTTCACAATGGCTCTTAC 846
Query 839 AAAAGAGGGACAACTCTGGAACTGGGGAGCAAATTCCAATTATGAGCTCGGGCGCGGTGA 898
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 847 AAAAGAGGGACAACTCTGGAACTGGGGAGCAAATTCCAATTATGAACTCGGACGCGGTGA 906
Query 899 TAACTTGGGAGGTTGGGAACCATTGCCGGTTCCCAGTTTAGATAGTG-TTCGTATTACCC 957
|||||||||||||||||||||| ||||||||||||||||||| || | ||||||||||||
Sbjct 907 TAACTTGGGAGGTTGGGAACCAATGCCGGTTCCCAGTTTAGA-AGGGGTTCGTATTACCC 965
Query 958 AGATTGCTTGCGGTGGATATCATTCTCTTGCCTTAACCGAGGAAGGTAAAGTACTCTCAT 1017
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 AGATTGCGTGCGGTGGATATCATTCTCTTGCCTTAACCGAGGAAGGTAAAGTACTCTCAT 1025
Query 1018 GGGGCCACGGTGGCCATGGCCAGTTGGGTAATTCCTCGTTGCGAAACCAGAAAATTCCTA 1077
|||||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 1026 GGGGCCACGGTGGCCACGGCCAGTTGGGTAGTTCCTCGCTGCGAAACCAGAAAGTTCCTA 1085
Query 1078 CAGAAATCGAAGCATTAGAAGATAAAAAGATCGTCTTCATCGCTTGTGGAGGTTCCTCGT 1137
| |||||||||||||||| || |||||||| |||||||||||| ||||||||||||| |
Sbjct 1086 CTGAAATCGAAGCATTAGCTGACAAAAAGATAGTCTTCATCGCTAGTGGAGGTTCCTCTT 1145
Query 1138 CTGCAGCGATAACAGATGGTGGTGAACTCTGGATGTGGGGAAACGCTAAAGATTTCCAGC 1197
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 CTGCAGCGATAACAGATGGGGGTGAACTCTGGATGTGGGGAAACGCTAAAGATTTCCAGC 1205
Query 1198 TAGGAGTTCCAGGTCTCCCGGAGATCCAAACAACTCCGGTCGAAGTCAATTTCTTAACCG 1257
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1206 TAGGAGTTCCAGGTCTCCCTGAGATCCAAACTACTCCGGTCGAAGTCAATTTCTTAACCG 1265
Query 1258 AAGAAGATGAGCGTCAACCACACAAGGTTATCTCAGTTTCCATTGGTGCTTCACATGCTC 1317
||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1266 AAGAAGATGAGTGTCAACCACACAAGGTTATCTCAATTTCCATTGGTGCTTCTCATGCTC 1325
Query 1318 TGTGTTTGGTCTCAAGATCACATTAA-TAAACACTTTGATAG 1358
||||||| ||||||||||||| |||| ||| ||||| |||||
Sbjct 1326 TGTGTTTAGTCTCAAGATCACCTTAAGTAA-CACTTGGATAG 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67168329210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5