BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496240
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60890.1 | Symbols: ATMYB34, ATR1, MYB34 | myb domain protei... 1753 0.0
> AT5G60890.1 | Symbols: ATMYB34, ATR1, MYB34 | myb domain protein
34 | chr5:24494691-24496351 FORWARD LENGTH=1357
Length=1357
Score = 1753 bits (949), Expect = 0.0
Identities = 1094/1163 (94%), Gaps = 13/1163 (1%)
Strand=Plus/Plus
Query 120 TTTCTTGTTAATTTTATTTTAAAACAAAGGATTAAAGA---G-TCTTTCTTTTGGAAACA 175
|||| ||||||||||||||||||||||||||||||||| | |||||||||||| ||||
Sbjct 184 TTTCGTGTTAATTTTATTTTAAAACAAAGGATTAAAGAGTCGTTCTTTCTTTTGGTAACA 243
Query 176 TGGAGCCTTAATGATCCTTTTGTTACCTCTAGCTAGGATTTTACGTACTAATTA-GGTAT 234
||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| |||||
Sbjct 244 TGGAGCCTTAATGATCC-TTTGTTAGCTCTAGCTAGGATTTTACGTACTACTTAGGGTAT 302
Query 235 TTAAACTAAAACAAAATCAAGAAGAAGAGCATAGAGAGATGGTGAGGACACCATGTTGCA 294
| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 303 TCAAACTAAAATAAAATCAAGAAGAAGAGC--AGAGAGATGGTGAGGACACCATGTTGCA 360
Query 295 AAGAAGAAGGAATAAAGAAAGGAGCTTGGACTCCTGAGGAAGACCAAAAGCTAATTGCTT 354
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 361 AAGAAGAAGGAATAAAGAAAGGAGCTTGGACTCCTGAGGAAGATCAAAAGCTTATTGCTT 420
Query 355 ATCTTCAACTACATGGTGAAGGTGGATGGCGTACTCTCCCTGAAAAAGCTGGATTGAAGA 414
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATCTTCACCTACATGGTGAAGGTGGATGGCGTACTCTCCCTGAAAAAGCTGGATTGAAGA 480
Query 415 GATGTGGAAAGAGTTGCAGATTGAGATGGGCTAATTACTTAAGACCCGACATTAAGAGAG 474
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATGTGGAAAGAGTTGTAGATTGAGATGGGCTAATTACTTAAGACCCGACATTAAGAGAG 540
Query 475 GAGAGTTTAGTCCTGAAGAAGACGACACTATCATCAAGCTTCATGCTCTTAAGGGTAACA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGAGTTTAGTCCTGAAGAAGACGACACTATCATCAAGCTTCATGCTCTTAAGGGTAACA 600
Query 535 AGTGGGCCGCGATCGCCTCTAGTTTGGCGGGACGAACTGACAACGAAATAAAAAACTATT 594
|||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 601 AGTGGGCCGCAATCGCCACTAGCTTGGCGGGACGAACTGACAACGAAATAAAAAACTATT 660
Query 595 GGAACACAAATCTCAAGAAGCG-TCTAAAACAAAAAGGCCTCGATCCAATTACTCACAAA 653
|||||||||||||||||||||| | | || ||||||||| ||||| |||| |||||||||
Sbjct 661 GGAACACAAATCTCAAGAAGCGGT-TGAAGCAAAAAGGCATCGATGCAATCACTCACAAA 719
Query 654 CCGATCAATTCAACCGGTAAAACTGGTCTGGAACCAAAAACCAATAAACCGGTTTATTCA 713
|||||||||||||||||| |||| ||| | ||||||||| ||||||||||| ||||||
Sbjct 720 CCGATCAATTCAACCGGTCAAACCGGTTTCGAACCAAAAGTAAATAAACCGGTATATTCA 779
Query 714 TCCGGTTCCGCTAGGCTTCTTAACCGCGTCGCAAGCAAATACGCGGTGGAATTAAACCGG 773
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 TCCGGTTCCGCTAGGCTTCTTAACCGCGTCGCAAGCAAATACGCGGTTGAATTAAACCGG 839
Query 774 GATCT-ACTAACCGGGATCATCAGTGGAAACTCTGCGGTCGCCGAAGATTCACAAAACTC 832
|| || ||| ||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 840 GA-CTTACTGACCGGGATCATCAGTGGAAACTCCACCGTCGCCGAAGATTCACAAAACTC 898
Query 833 CGGCGACGTTGATTCTCCGACTTCCACATTGCTCAACAAAATGGCGGCAACATCAGTTTT 892
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 899 CGGCGACGTTGATTCTCCGACCTCCACATTGCTCAACAAAATGGCGGCAACATCAGTTTT 958
Query 893 GATCAACACTACGACTACATTTTCCGGCTTCTCCGACAACTGTTCTTTCACCGATGACTT 952
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 959 GATCAACACTACGACTACATATTCCGGCTTCTCCGACAACTGTTCTTTCACTGATGAATT 1018
Query 953 CAACGAATTCTTTAGCAATGAAGAGATCTCCGATATGTATACGACAGTCGATAATTTTGG 1012
|||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 1019 CAACGAATTCTTTAACAATGAAGAGATCTCCGATATTTACACGACTGTCGATAATTTTGG 1078
Query 1013 GATTATGGAGGAGTTAAAGGGTATTTTAAGCTACGGCGGTGCCGGCGCCGGAGTTATTGA 1072
| ||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||
Sbjct 1079 GTTTATGGAAGAGTTAAAGAGTATTTTAAGCTACGGCGATGCCAGCGCCGGAGTTATTGA 1138
Query 1073 AGATTCGCCAGAGGTCAATGTAGCTGATGCAATGGAGTTCATTGATTCTTGGAACGAAGA 1132
| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1139 AAATTCGCCGGAGGTCAATGTAGCTGATGCAATGGAGTTCATTGATTCCTGGAACGAAGA 1198
Query 1133 TGACAATATGGTTGGAGTCTTTGTCTAACGAGTCAGACTAAAACCAATCTTACGTTGGTT 1192
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1199 TGACAATATGGTTGGAGTCTTTGTCTGACGAGTCAGACTAAAATCAATCTTACGTTGGTT 1258
Query 1193 TTTCCTTTAATAACCTGTGATAGATTGGTGTA-TCATCACGTGGTCGAAATAATGTGCTG 1251
||| ||||||||| |||||||||||| ||||| || |||||| ||| |||||||||||||
Sbjct 1259 TTTTCTTTAATAAGCTGTGATAGATTCGTGTAATCGTCACGTAGTCAAAATAATGTGCTG 1318
Query 1252 TTGTAAAAAATAATAATAATAAA 1274
||||||||| |||||||||||||
Sbjct 1319 TTGTAAAAATTAATAATAATAAA 1341
Score = 202 bits (109), Expect = 7e-51
Identities = 117/121 (97%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 1 TCTAAACTCGATATATAATGATAACACGTTCACGTGTTCATCGTCAAAAGAGTGTCTCAG 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 35 TCTAAACTCAATATATAATGATAACACGTTCACGTGTTCATCGTCAAAAGAGTGTCTCAG 94
Query 61 TGAGTACAGTCTTCAAGTGTCTTCTGGTTTTGATCAGACGCTCTATTCAATTCTCTTAAT 120
|||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 95 TGAGTACAATCTTCAGGTGTCTTCTAGTTTTGATCAGACGCTCTATTCAATTCTCTTAAT 154
Query 121 T 121
|
Sbjct 155 T 155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62650280160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5