BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496240 Length=1274 Score E Sequences producing significant alignments: (Bits) Value AT5G60890.1 | Symbols: ATMYB34, ATR1, MYB34 | myb domain protei... 1753 0.0 > AT5G60890.1 | Symbols: ATMYB34, ATR1, MYB34 | myb domain protein 34 | chr5:24494691-24496351 FORWARD LENGTH=1357 Length=1357 Score = 1753 bits (949), Expect = 0.0 Identities = 1094/1163 (94%), Gaps = 13/1163 (1%) Strand=Plus/Plus Query 120 TTTCTTGTTAATTTTATTTTAAAACAAAGGATTAAAGA---G-TCTTTCTTTTGGAAACA 175 |||| ||||||||||||||||||||||||||||||||| | |||||||||||| |||| Sbjct 184 TTTCGTGTTAATTTTATTTTAAAACAAAGGATTAAAGAGTCGTTCTTTCTTTTGGTAACA 243 Query 176 TGGAGCCTTAATGATCCTTTTGTTACCTCTAGCTAGGATTTTACGTACTAATTA-GGTAT 234 ||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| ||||| Sbjct 244 TGGAGCCTTAATGATCC-TTTGTTAGCTCTAGCTAGGATTTTACGTACTACTTAGGGTAT 302 Query 235 TTAAACTAAAACAAAATCAAGAAGAAGAGCATAGAGAGATGGTGAGGACACCATGTTGCA 294 | ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 303 TCAAACTAAAATAAAATCAAGAAGAAGAGC--AGAGAGATGGTGAGGACACCATGTTGCA 360 Query 295 AAGAAGAAGGAATAAAGAAAGGAGCTTGGACTCCTGAGGAAGACCAAAAGCTAATTGCTT 354 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 361 AAGAAGAAGGAATAAAGAAAGGAGCTTGGACTCCTGAGGAAGATCAAAAGCTTATTGCTT 420 Query 355 ATCTTCAACTACATGGTGAAGGTGGATGGCGTACTCTCCCTGAAAAAGCTGGATTGAAGA 414 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 ATCTTCACCTACATGGTGAAGGTGGATGGCGTACTCTCCCTGAAAAAGCTGGATTGAAGA 480 Query 415 GATGTGGAAAGAGTTGCAGATTGAGATGGGCTAATTACTTAAGACCCGACATTAAGAGAG 474 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GATGTGGAAAGAGTTGTAGATTGAGATGGGCTAATTACTTAAGACCCGACATTAAGAGAG 540 Query 475 GAGAGTTTAGTCCTGAAGAAGACGACACTATCATCAAGCTTCATGCTCTTAAGGGTAACA 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GAGAGTTTAGTCCTGAAGAAGACGACACTATCATCAAGCTTCATGCTCTTAAGGGTAACA 600 Query 535 AGTGGGCCGCGATCGCCTCTAGTTTGGCGGGACGAACTGACAACGAAATAAAAAACTATT 594 |||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 601 AGTGGGCCGCAATCGCCACTAGCTTGGCGGGACGAACTGACAACGAAATAAAAAACTATT 660 Query 595 GGAACACAAATCTCAAGAAGCG-TCTAAAACAAAAAGGCCTCGATCCAATTACTCACAAA 653 |||||||||||||||||||||| | | || ||||||||| ||||| |||| ||||||||| Sbjct 661 GGAACACAAATCTCAAGAAGCGGT-TGAAGCAAAAAGGCATCGATGCAATCACTCACAAA 719 Query 654 CCGATCAATTCAACCGGTAAAACTGGTCTGGAACCAAAAACCAATAAACCGGTTTATTCA 713 |||||||||||||||||| |||| ||| | ||||||||| ||||||||||| |||||| Sbjct 720 CCGATCAATTCAACCGGTCAAACCGGTTTCGAACCAAAAGTAAATAAACCGGTATATTCA 779 Query 714 TCCGGTTCCGCTAGGCTTCTTAACCGCGTCGCAAGCAAATACGCGGTGGAATTAAACCGG 773 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 780 TCCGGTTCCGCTAGGCTTCTTAACCGCGTCGCAAGCAAATACGCGGTTGAATTAAACCGG 839 Query 774 GATCT-ACTAACCGGGATCATCAGTGGAAACTCTGCGGTCGCCGAAGATTCACAAAACTC 832 || || ||| ||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 840 GA-CTTACTGACCGGGATCATCAGTGGAAACTCCACCGTCGCCGAAGATTCACAAAACTC 898 Query 833 CGGCGACGTTGATTCTCCGACTTCCACATTGCTCAACAAAATGGCGGCAACATCAGTTTT 892 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 899 CGGCGACGTTGATTCTCCGACCTCCACATTGCTCAACAAAATGGCGGCAACATCAGTTTT 958 Query 893 GATCAACACTACGACTACATTTTCCGGCTTCTCCGACAACTGTTCTTTCACCGATGACTT 952 |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || Sbjct 959 GATCAACACTACGACTACATATTCCGGCTTCTCCGACAACTGTTCTTTCACTGATGAATT 1018 Query 953 CAACGAATTCTTTAGCAATGAAGAGATCTCCGATATGTATACGACAGTCGATAATTTTGG 1012 |||||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||| Sbjct 1019 CAACGAATTCTTTAACAATGAAGAGATCTCCGATATTTACACGACTGTCGATAATTTTGG 1078 Query 1013 GATTATGGAGGAGTTAAAGGGTATTTTAAGCTACGGCGGTGCCGGCGCCGGAGTTATTGA 1072 | ||||||| ||||||||| |||||||||||||||||| |||| |||||||||||||||| Sbjct 1079 GTTTATGGAAGAGTTAAAGAGTATTTTAAGCTACGGCGATGCCAGCGCCGGAGTTATTGA 1138 Query 1073 AGATTCGCCAGAGGTCAATGTAGCTGATGCAATGGAGTTCATTGATTCTTGGAACGAAGA 1132 | ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1139 AAATTCGCCGGAGGTCAATGTAGCTGATGCAATGGAGTTCATTGATTCCTGGAACGAAGA 1198 Query 1133 TGACAATATGGTTGGAGTCTTTGTCTAACGAGTCAGACTAAAACCAATCTTACGTTGGTT 1192 |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 1199 TGACAATATGGTTGGAGTCTTTGTCTGACGAGTCAGACTAAAATCAATCTTACGTTGGTT 1258 Query 1193 TTTCCTTTAATAACCTGTGATAGATTGGTGTA-TCATCACGTGGTCGAAATAATGTGCTG 1251 ||| ||||||||| |||||||||||| ||||| || |||||| ||| ||||||||||||| Sbjct 1259 TTTTCTTTAATAAGCTGTGATAGATTCGTGTAATCGTCACGTAGTCAAAATAATGTGCTG 1318 Query 1252 TTGTAAAAAATAATAATAATAAA 1274 ||||||||| ||||||||||||| Sbjct 1319 TTGTAAAAATTAATAATAATAAA 1341 Score = 202 bits (109), Expect = 7e-51 Identities = 117/121 (97%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 1 TCTAAACTCGATATATAATGATAACACGTTCACGTGTTCATCGTCAAAAGAGTGTCTCAG 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 35 TCTAAACTCAATATATAATGATAACACGTTCACGTGTTCATCGTCAAAAGAGTGTCTCAG 94 Query 61 TGAGTACAGTCTTCAAGTGTCTTCTGGTTTTGATCAGACGCTCTATTCAATTCTCTTAAT 120 |||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 95 TGAGTACAATCTTCAGGTGTCTTCTAGTTTTGATCAGACGCTCTATTCAATTCTCTTAAT 154 Query 121 T 121 | Sbjct 155 T 155 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62650280160 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5