BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496241
Length=2277
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60900.1 | Symbols: RLK1 | receptor-like protein kinase 1 | ... 3197 0.0
> AT5G60900.1 | Symbols: RLK1 | receptor-like protein kinase 1
| chr5:24498467-24501494 REVERSE LENGTH=2247
Length=2247
Score = 3197 bits (1731), Expect = 0.0
Identities = 2109/2286 (92%), Gaps = 48/2286 (2%)
Strand=Plus/Plus
Query 1 ATGGGTTCTCTTTCTTGTTTAATAATCTATCTTGTTCTTGTTCTGCAACTACAAACAttt 60
||||||||||||||||||| ||||||| |||| |||||| ||||||||||||||||||||
Sbjct 1 ATGGGTTCTCTTTCTTGTTCAATAATCCATCTGGTTCTTATTCTGCAACTACAAACATTT 60
Query 61 tttgttttttCTCAAAACATCAGAAACGGCTCTGTTCCTGTTGGAGAATCTCTCACTGCT 120
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 61 TTCGTTTTTTCTCAAAACATCAGAAACGGCTCTGTTCCTGTCGGAGAATCTCTCACCGCT 120
Query 121 TCAGAGTCCCAACAAATCTCCAGTTCATGGCGTTCACCTTCAGGTGACTTTGCTTTCGGG 180
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TCAGAGTCCCAACAAATCTCTAGTTCATGGCGTTCACCTTCCGGTGACTTTGCTTTCGGG 180
Query 181 TTCCGCAAGATCCAACCAAACGATGGTTTCACTCTCTCCATTTGGTTCGACAAGATTTCT 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCGCAAGATCCAACCAAACGACGGTTTCACTCTCTCCATTTGGTTCGACAAGATTTCT 240
Query 241 GACAAGACCATCGTGTGGCACGCACAAGCCATCAACACATCCACTGGTCTTGTCCCTGAT 300
|||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| ||
Sbjct 241 GACAAGACCATCGTGTGGCACGCACAAGCCGTCAACACAACCACCGGTCTTGTCCCTAAT 300
Query 301 GGTTCGAAAGTTACATTAACCGCAGATGGCGGTCTGGTTATCACTGACCCTAGAGGTCAG 360
|||||||| ||||||||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct 301 GGTTCGAAGGTTACATTAACTGCAGATGGCGGTCTGGTTATCGCTGACCCTCGAGGTCAG 360
Query 361 GAGCTGTGGAGATCGTTGAGAGGTGGCTCTGTTTCTCGAGGGCGCA-TAACTGACGAGGG 419
|||||||||||| ||||||| ||||||||||||||||||||||| | | |||||||| ||
Sbjct 361 GAGCTGTGGAGAGCGTTGAGTGGTGGCTCTGTTTCTCGAGGGCG-ATTTACTGACGACGG 419
Query 420 AAACTTCGTTCTGTTCAGGGATGGGTCAGAAGATTCTGACGAGGTTCTATGGTCGACG-T 478
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 420 AAACTTCGTTCTTTTCAGAGATGGGTCAGAAGATTCTGACGAGGTTCTATGGTCGA-GCT 478
Query 479 TTGAAAATCCCACCGACACTCTGTTACCTAATCAGAATATAGAAGTTGGAAGTAATCTGT 538
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 479 TTGAAAATCCCACCGACACTCTGTTACCTAATCAGAATATAGAAGTTGGAAGGAATCTGT 538
Query 539 CATCTCGTAGGACAGAGACAAGCTTCACGAAAGGAAGATTCAGCTTACGTCTAG-GTGAC 597
|||| |||||||||||||| ||||||| ||||||||||||||| ||||||||| | ||
Sbjct 539 CATCACGTAGGACAGAGACGAGCTTCAAAAAAGGAAGATTCAGCCTACGTCTAGAG-GAT 597
Query 598 GACGGAAATCTTCAGCTTCTCACTCTCAACGCCGAGACTGTCTCAGAATCAGACATATAC 657
||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 598 GACGGAAATCTTCAGCTTCACTCTCTCAACGCCGAGACTGCCTCAGAATCAGACATATAC 657
Query 658 TTTCACTACTACGAAAGTAACACGAACGATCCAAACAACCCCGGGATTCGATTAGTTTTC 717
| ||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||||
Sbjct 658 TCTCAGTACTACGAAAGTAATACCAACGATCCAAACAACCCCGGGATTCAATTAGTTTTC 717
Query 718 AACCAATCAGGGTACATGTATGTTCTTCAAAAGAACAATTCAAGATTCGTTGTCAAAGAG 777
||||| |||||| | || ||||||||||||| |||||||||||||||||| ||||||||
Sbjct 718 AACCAGTCAGGGGAAATATATGTTCTTCAAAGGAACAATTCAAGATTCGTCGTCAAAGAT 777
Query 778 AGAGATCCGGACTTTTCTAGCGACTTCTATCGCCGTGCCGTGCTACATTTCGACGGGGGG 837
||||||||||| || | ||||||||||| ||||| |||||||||||| |||
Sbjct 778 AGAGATCCGGA---TT-T------TTCTATCGCCGCGCCGTTCTACATTTCGAC---GGG 824
Query 838 CAAGAGAATAGTGGGCACGATGATGCACTTGGGAATACGGCTTGTGGGTATAATAATATT 897
| | |||||||||||||||||||| |||||||||||||||||||||
Sbjct 825 C--------------CCCGATGATGCACTTGGGAATATGGCTTGTGGGTATAATAATATA 870
Query 898 TGTAGTTTAGGAAACAACCAGAGGCCAAAATGTGAATGTCCTGAGAGGTTTGTGTTGAAG 957
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct 871 TGTAGTTTAGGAAACAACAAGAGGCCAAAATGTGAGTGTCCTGAGAGGTTTGTGTTAAAG 930
Query 958 GATCCGAGCAATGAGTATGGTAATTGCTTGCCAGATTTTGAGATGCACACGTGTAGACCA 1017
||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||||
Sbjct 931 GATCCGAGCAATGAGTATGGTGATTGTTTGCCAGATTTTGAGATGCAGACTTGTAGACCA 990
Query 1018 GAGAACAACAAAACCGCAAACTCAGATGTAAATCTTTATGAGTTCATTACTTTAGAGAAA 1077
|||||| | ||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 991 GAGAAC--C-AAACCGCAAACTCAGATGTGAATCTTTACGAGTTCATTACTTTAGAGAAG 1047
Query 1078 ACGAATTGGCCGTTTGGGGATTATGAGAGTTACGCCAACTATGATGAAGAAAGATGTAAA 1137
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1048 ACGAATTGGCCGTTTGGGGATTATGAGAGTTATGCCAACTATGATGAAGAAAGATGTAAA 1107
Query 1138 GCTGCTTGTCTTAACGACTGTTTATGTGCTGCGGTTGTTTTTGGAACAAATCGTGATCTA 1197
||| ||||||||| ||| |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1108 GCTTCTTGTCTTAGCGATTGTTTATGTGCTGCGGTTATTTTTGGAACAAATCGGGATCTA 1167
Query 1198 AAATGTTGGAAGAAGAAGTTTCCGTTGTCTCACGGTGAAAGAGCTCCGCGTGGTGATAGC 1257
||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||
Sbjct 1168 AAATGTTGGAAGAAGAAGTTTCCCTTGTCTCACGGTGAAAGATCTCCACGTGGTGATAGT 1227
Query 1258 GATACATTCATTAAGGTTCGAAACCGCGCCATCGCGGATAG-TCCAATTACCGGAAAGAG 1316
||||||||||||||||||||||||||| ||||||||||| | |||| |||||||||| ||
Sbjct 1228 GATACATTCATTAAGGTTCGAAACCGCTCCATCGCGGAT-GTTCCAGTTACCGGAAACAG 1286
Query 1317 AACGAAAAAACTTGATC-GAGTCTTTACATATGGAGAGCTTGCGGCGGCTACAGGAGATT 1375
| ||||||||||||| | | ||||||||||||||||||||||| | ||||||| ||||||
Sbjct 1287 AGCGAAAAAACTTGA-CTGGGTCTTTACATATGGAGAGCTTGCAGAGGCTACAAGAGATT 1345
Query 1376 TCACGGAAGAGCTTGGAAGAGGAGCCTTTGGTATAGTTTACAAAGGAT-TTATAAAAGTT 1434
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1346 TCACGGAAGAGCTTGGAAGAGGAGCCTTTGGTATAGTTTACAAAGGATATT-TAGAAGTT 1404
Query 1435 GCCGGTGATTCTGAAGTAACTGTGGCTGTGAAAAAATTAGATCGTCTTGATCAAGATAAC 1494
||||||| ||||||||| || ||||||||||| ||| |||||||||||||| |||||||
Sbjct 1405 GCCGGTGGTTCTGAAGTTACCGTGGCTGTGAAGAAACTAGATCGTCTTGATTTAGATAAC 1464
Query 1495 GAAAAAGAGTTCAAGAATGAGGTTAAAGTGATAGGTCGGATTCACCACAAGAACCTAGTG 1554
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1465 GAAAAAGAGTTCAAGAATGAGGTTAAAGTGATAGGTCAGATTCACCACAAGAACCTAGTG 1524
Query 1555 AGGCTCATTGGCTTCTGCAACGAAGGACAGAGCCAGATGATCGTCTACGAGTTTTTACCA 1614
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1525 AGGCTCATTGGCTTCTGCAACGAAGGACAGAGCCAGATGATCGTCTATGAGTTTTTACCA 1584
Query 1615 CAAGGGACGCTAGCCAACTTTCTCTTCAGGCGTCCGAGAACGAGCTGGGAAGATAGAAGG 1674
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
Sbjct 1585 CAAGGGACGCTAGCCAATTTTCTCTTCAGGCGTCCGAGGCCGAGCTGGGAAGATAGAAAG 1644
Query 1675 AATATTGCGATTGG-CATTGCTCGTGGAATCTTGTATCTACACGAAGAGTGCAGCGAGCA 1733
||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1645 AATATTGCG-GTGGCCATTGCTCGTGGAATCTTGTATCTACATGAAGAGTGCAGCGAGCA 1703
Query 1734 GATCATACACTGCGACTTAAAACCGCAGAACGTACTTCTAGATGAGTATTACAGTCCTCG 1793
|||||||||||| ||| |||||||||||||| |||| |||||||||||||||| ||||||
Sbjct 1704 GATCATACACTGTGACATAAAACCGCAGAACATACTCCTAGATGAGTATTACACTCCTCG 1763
Query 1794 GATCTCGGATTTTGGTCTAGCTAAGCTTTTGATGATGAACCAAACTTATACGCTCACGAA 1853
||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||
Sbjct 1764 GATCTCGGATTTTGGTCTAGCAAAGCTTTTGTTGATGAACCAAACGTATACGCTCACTAA 1823
Query 1854 CATCCGCGGAGCAAAAGGGTATGTGGCACCGGAATGGTTCAGGAACAGTCCCATTACATC 1913
|||||| ||| |||||||||||||||| || |||||||||||||| || |||||||||||
Sbjct 1824 CATCCGTGGAACAAAAGGGTATGTGGCCCCTGAATGGTTCAGGAATAGCCCCATTACATC 1883
Query 1914 CAAAGTAGATGTTTATAGCTATGGAGTAATGCTTTTAGAAATCGTGTGCTGCAAGAAAGC 1973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1884 CAAAGTAGATGTTTATAGCTATGGAGTAATGCTTTTAGAAATCGTGTGCTGCAAGAAAGC 1943
Query 1974 CGTCGATCTTGAGGATAACGTGATTCTCATCGATTGGGCTTACGATTGTTTTCGACATGA 2033
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1944 CGTCGACCTTGAGGATAACGTGATTCTCATCAATTGGGCTTACGATTGTTTTCGACAAGG 2003
Query 2034 AAGGCTGGAAGATCTGACCGAGGACGATTCAGAGGCAATGAATGACATG-AAGACGGTGG 2092
|||| ||||||||||||| |||||||||||||||||||||||||||||| || || ||||
Sbjct 2004 AAGGTTGGAAGATCTGACTGAGGACGATTCAGAGGCAATGAATGACATGGAA-ACTGTGG 2062
Query 2093 GGAGATATGTGAAAATAGCGATATGGTGTATACAAGGAGAGCCTAGGATGAGACCTAACA 2152
||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 2063 AGAGATATGTGAAAATAGCGATATGGTGTATACAAGAAGAGCATGGGATGAGACCTAACA 2122
Query 2153 TGAGAAATGTTACACAGATGCTTGAAGGTGTGACTCAAGTTCATGATCCTCCAAATCCGT 2212
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 2123 TGAGAAATGTTACACAGATGCTTGAAGGTGTGATTCAAGTTTTTGATCCTCCAAATCCGT 2182
Query 2213 CTCCTTATAGCACTTTCACTTA-TACTGATGAGTCTATGTCTAGTGGTTCAGTGTCACTT 2271
||||||||||||||||||||| | ||||||| ||| ||||||||| | |||||||||||
Sbjct 2183 CTCCTTATAGCACTTTCACTTGGT-CTGATGAATCTTTGTCTAGTGATCCAGTGTCACTT 2241
Query 2272 GTTTGA 2277
||||||
Sbjct 2242 GTTTGA 2247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113001426795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5