BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496244
Length=1816
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60920.1 | Symbols: COB | COBRA-like extracellular glycosyl-... 2717 0.0
> AT5G60920.1 | Symbols: COB | COBRA-like extracellular glycosyl-phosphatidyl
inositol-anchored protein family | chr5:24511196-24514129
REVERSE LENGTH=1838
Length=1838
Score = 2717 bits (1471), Expect = 0.0
Identities = 1727/1844 (94%), Gaps = 43/1844 (2%)
Strand=Plus/Plus
Query 1 CAAAAATTTCTCATTGCTTCTCTCGTTCCaaaaaaaCTCTTGGTGCTATCT-TCTATAAG 59
||||||| |||||||||||||||||||| ||||||| ||||| |||||||| ||||||||
Sbjct 1 CAAAAATGTCTCATTGCTTCTCTCGTTCTAAAAAAAATCTTGCTGCTATCTCTCTATAAG 60
Query 60 TCCACTCCTCCTTCAAGCAAAGCACCTTCCTCTTCTTCTT-CTCACTCTGAGATTGGTTT 118
||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 61 TCCACTCCTCCTTCAAGCAAAGCACCTTCCTCTTCTTTTTGCTC-CTCTGAGATTGGTTT 119
Query 119 AATCTTAAACCAGACCCATCTAAGGGATCTGGAACAAGCTTCGTCTCTGGTTCTGCTCTG 178
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 120 AAGATTAAACCAGACCCATCTAAGGGATCTGGAACAAGCTTCGTCTCTGGTTCCACTCTG 179
Query 179 ATCATCAGAGAATTAAAAATGGAGTCTTTCTTCTCCAGATCCACCTCCATCGTCTCCAAA 238
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATCATCAGAGTATTAAAAATGGAGTCTTTCTTCTCCAGATCCACCTCCATCGTCTCCAAA 239
Query 239 TTGAGTTTCTGGGCCTTATGGATCGTGTTCTTGATTTCTTCATCTTCTTTTACTTCGACA 298
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 TTGAGTTTCTTGGCCTTATGGATCGTCTTCTTGATTTCTTCATCTTCTTTTACTTCGACA 299
Query 299 GAAGCATATGATGCGCTTGATCCAGAAGGCAACATTACAATGAAATGGGATGTCATGAGC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 GAAGCATATGATGCGCTTGATCCAGAAGGCAACATTACAATGAAATGGGATGTTATGAGC 359
Query 359 TGGACTCCTGATGGCTATGTTGCCGTGGTTACGATGTTCAACTTCCAGAAATACAGACAC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGGACTCCTGATGGCTATGTTGCCGTGGTTACGATGTTCAACTTCCAGAAATACAGACAC 419
Query 419 ATTCAATCTCCGGGATGGACATTAGGCTGGAAATGGGCAAAGAAGGAAGTTATTTGGAGT 478
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 420 ATTCAATCTCCAGGATGGACATTAGGTTGGAAATGGGCAAAGAAGGAAGTTATATGGAGT 479
Query 479 ATGGTTGGAGCACAAACAACTGAACAAGGTGATTGTTCAAAGTACAAAGGAAACATACCG 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATGGTTGGAGCACAAACAACTGAACAAGGTGATTGTTCAAAGTACAAAGGAAACATACCA 539
Query 539 CATTGTTGTAAGAAAGATCCAACAGTTGTAGACTTGCTTCCTGGGACTCCTTATAACCAG 598
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 540 CATTGTTGTAAGAAGGATCCAACAGTTGTAGACTTGCTTCCAGGGACTCCTTATAATCAG 599
Query 599 CAGATTGCCAATTGCTGCAAAGGTGGTGTCATGAACTCATGGGTACAAGACCCTGCCACC 658
|||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 600 CAGATTGCTAATTGCTGCAAGGGTGGTGTTATGAACTCATGGGTTCAAGACCCTGCCACT 659
Query 659 GCGGCTAGCTCCTTCCAGATCAGTGTTGGCGCTGCTGGAACCACAAACAAAACCGTTAGG 718
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 660 GCGGCTAGCTCCTTCCAGATTAGTGTTGGTGCTGCTGGAACCACAAACAAAACCGTTAGG 719
Query 719 GTGCCAAGAAACTTCACTCTCATGGGACCTGGTCCAGGCTACACTTGTGGTCCAGCAAAG 778
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 720 GTCCCAAGAAACTTCACTCTCATGGGACCTGGTCCAGGTTACACTTGTGGTCCAGCAAAG 779
Query 779 ATTGTCAGACCAACAAAATTTGTCACGACCGACACACGGAGAACCACCCAAGCTATGATG 838
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 780 ATTGTCAGACCAACAAAATTTGTCACGACTGACACACGCAGAACCACTCAAGCTATGATG 839
Query 839 ACATGGAACATTACGTGCACATACTCGCAGTTCCTTGCTCAAAGAACTCCAACTTGCTGT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACATGGAACATTACGTGCACATACTCGCAGTTCCTTGCTCAAAGAACTCCAACTTGCTGT 899
Query 899 GTTTCTTTATCTTCTTTCTACAATGAAACTATTGTCGGATGTCCAACTTGTGCTTGCGGA 958
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 900 GTTTCTTTATCTTCTTTCTACAATGAAACCATTGTTGGATGTCCAACTTGTGCTTGCGGA 959
Query 959 TGCCAAAACAACAAAACTGAATCCGGTGCCTGCCTCGACCCGGACACACCACACTTAGCC 1018
|| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGTCAAAACAACAGAACAGAATCCGGTGCCTGCCTCGACCCGGACACACCACACTTAGCC 1019
Query 1019 TCGGTTGTGTCACCTCCAACAAAGAAAGGCACGGTATTACCGCCATTAGTGCAGTGCACG 1078
|||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||
Sbjct 1020 TCGGTTGTGTCACCACCAACAAAGAAAGGAACGGTTTTACCACCATTAGTGCAATGCACG 1079
Query 1079 AGACACATGTGCCCGATCCGAGTACATTGGCACGTAAAGCAGAACTATAAAGAGTATTGG 1138
|||||||||||||||||| |||| |||||||| |||||||||||||| ||||||||||||
Sbjct 1080 AGACACATGTGCCCGATCAGAGTGCATTGGCATGTAAAGCAGAACTACAAAGAGTATTGG 1139
Query 1139 CGAGTGAAGATCACAATCACAAACTTCAACTATCGATTGAACTATACACAATGGAACCTC 1198
|| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1140 CGTGTGAAGATCACAATCACAAACTTCAACTATCGCTTGAACTACACACAATGGAACCTT 1199
Query 1199 GTTGCTCAACATCCAAATCTCGACAACATCACTCAAATCTTCAGCTTCAACTACAAATCT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GTTGCTCAACATCCAAATCTCGACAACATCACTCAAATCTTCAGCTTCAACTACAAATCT 1259
Query 1259 CTCACTCCGTACGCTGGATTAAACGATACGGCGATGCTATGGGGAGTGAAGTTCTACAAC 1318
|| ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1260 CTTACTCCTTACGCTGGACTAAACGATACGGCGATGTTATGGGGAGTGAAGTTCTACAAC 1319
Query 1319 GATTTCTTATCAGAAGCAGGTCCTCTTGGGAATGTTCAATCAGAGATTTTGTTCCGTAAA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GATTTCTTATCAGAAGCAGGTCCTCTTGGGAATGTTCAATCAGAGATTTTGTTCCGTAAA 1379
Query 1379 GATCAATCAACCTTCACATTCGAGAAAGGTTGGGCTTTTCCTCGAAGGATTTACTTTAAT 1438
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1380 GACCAATCAACCTTCACATTCGAGAAAGGTTGGGCTTTTCCACGAAGGATTTACTTTAAT 1439
Query 1439 GGAGACAACTGCGTCATGCCTCCTCCTGACTCTTACCCTTTTCTTCCCAACGGTGGTTTC 1498
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1440 GGAGACAATTGCGTCATGCCTCCTCCAGACTCTTACCCTTTTCTTCCCAACGGTGGTTCC 1499
Query 1499 CGG-CTACAATTCTCATTCTTGGCCGCCGTGCTCCTCCCTGTTCT-GATCTTTTTCTTCT 1556
||| | ||||||||||||| | |||||||||||||||||| |||| | ||||||||||||
Sbjct 1500 CGGTC-ACAATTCTCATTCGTCGCCGCCGTGCTCCTCCCTCTTCTTG-TCTTTTTCTTCT 1557
Query 1557 TCTCTGCCTAATCTCGGATTTACGGTTTTGCCACTGGTATGGTTAGGGTTCGACGGTTGA 1616
|||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||
Sbjct 1558 TCTCTGCCTAATCTCGGATTTACGGTTTTGCCACTGGTTTGCTTAGGGTT--ACGGCGGA 1615
Query 1617 GTGGTATAAACGTT-ATTTATGATTCTTT--------A------T------CTTTTGATA 1655
|||||||||||||| |||||||||||||| | | |||||||||
Sbjct 1616 GTGGTATAAACGTTTATTTATGATTCTTTTGTGTCCCACAAAAATTATAATCTTTTGATA 1675
Query 1656 CCTTTTAATA-TATA--TAGTTTTCAACTTCGTTGTTTTTAAAAGAAATTTATATCCCTG 1712
| |||||| | |||| |||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1676 CTTTTTAAAAATATAAATAGTTTTCAACTTCCTTGTTTTTAAAAGAAATTTATATCCTTG 1735
Query 1713 TGTTCTGTTGGTCCGTCGTTGGAGAATATCGGAAACaaaaaaaaaaaGATCATAATGTTA 1772
||||||||||||||||||||| |||||||||| || |||||||||||||| ||||
Sbjct 1736 TGTTCTGTTGGTCCGTCGTTGTAGAATATCGGGAA-AAAAAAAAAAAGAT------GTTA 1788
Query 1773 GATATTGTAAACTTTGTTT-CCTA-CTGTTATATACTTTACTTT 1814
|||| |||||||||||||| || | | |||||||||||||||||
Sbjct 1789 GATACTGTAAACTTTGTTTTCCGAAC-GTTATATACTTTACTTT 1831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89858975550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5