BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496249
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60960.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2728 0.0
> AT5G60960.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:24528250-24530011 REVERSE LENGTH=1762
Length=1762
Score = 2728 bits (1477), Expect = 0.0
Identities = 1666/1758 (95%), Gaps = 9/1758 (1%)
Strand=Plus/Plus
Query 1 AATTTTCTCTCACTAAATCAGAAATGCCGCCGTCGTTACCGTCTCTGCAACTCCGGCGGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 AATTTTCTCTCACTAAATCAGAAATGCCGCCGTCGTTACCGTCTCTGCAACTCCGACGGC 60
Query 61 TTCTCCTCCGTAGCTTCATTTCCTCCTCCTCCTCCGTCAATACTCTTCAAACTCAGTCCC 120
|||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |||
Sbjct 61 TTCTCCTCCGTAGCTTCA-TT--TCCTCCTCCTCCGTCAATACTCTTCAATCTCAGCCCC 117
Query 121 GTCTCATTTCTTCCAAGCC-TTCGTTTTCTCCTCTTCCGCCTTCCCGTTCCTCTACATTC 179
|| |||||||||||||||| || ||||||||||||||| |||||||||||||||| ||||
Sbjct 118 GTATCATTTCTTCCAAGCCGTT-GTTTTCTCCTCTTCCCCCTTCCCGTTCCTCTATATTC 176
Query 180 TCAACATTTCCTTCTAGATTATTCTCATCTGAAACAAATGCGGAATCGGAAACTTTGGAT 239
|||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct 177 TCAACATTTCCTTCTAGATTCTTCTCATCTGAAACGAATGCGGAATCGGAATCTTTGGAT 236
Query 240 TCGAATGAGATCGCTCTCTCGTTCTCGAAGGAGCTCACTGGGAATCCAGACGCCGAGTCT 299
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 237 TCGAATGAGATCGCTCTCTCTTTCTCGAAGGAGCTCACCGGGAATCCAGACGCCGAGTCT 296
Query 300 CACGCCATCTCGCAGAGATTCAATCTCAGCTTCTCCCACATCACGCCTAATCCCGATTTG 359
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAAACCATTTCGCAGAGATTCAATCTCAGCTTCTCCCACATCACGCCTAATCCCGATTTG 356
Query 360 ATTCTCCAAACTCTAAATCTCTCACCGGAAGCTGGTCGCGCGGCTCTAGGCTTTAACGAG 419
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 357 ATTCTCCAAACTCTTAATCTCTCACCGGAAGCTGGTCGCGCGGCTCTAGGTTTTAACGAG 416
Query 420 TGGTTGGATTCGAACTCTAACTTCTCTCACACCGATGAAACAGTTTCGTATTTCGTCGAT 479
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 417 TGGTTAGATTCGAACTCTAACTTCTCTCACACCGATGAAACAGTTTCGTTTTTCGTCGAT 476
Query 480 TACTTTGGTCGTCGGAAAGATTTCAAAGGGATGCTAGAGATCATCTCGAAATACAAAGGT 539
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 477 TACTTTGGCCGTCGGAAAGATTTCAAAGGAATGCTAGAGATCATCTCGAAATACAAAGGT 536
Query 540 ATCGCCGGAGCTAAAACACTAGAATCGGCGATTGATAGGCTTGTTCGAGCTGATAGACCT 599
|||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 537 ATCGCCGGAGGTAAAACACTAGAATCGGCGATTGATAGGCTTGTTAGAGCTGGTAGACCT 596
Query 600 AAGCAGGTCGCTGCTTTCTTCGAGAAAATGGAGAACGATTACGGATTGAAACGTGACAGA 659
||||||||| ||| ||||||||||||||||||||| ||||| || ||||||||||| | |
Sbjct 597 AAGCAGGTCACTGATTTCTTCGAGAAAATGGAGAATGATTATGGTTTGAAACGTGATAAA 656
Query 660 GATTCACTTACATTGGTTGTGAAGAAGCTATGTGAGAAAGGACACGCGAGTATCGCAGAG 719
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 657 GAATCACTTACCTTGGTTGTGAAGAAGCTTTGTGAGAAAGGACACGCGAGTATCGCAGAG 716
Query 720 AAGATGGTGAAGAACACTGCTAATGATATATTTCCTGATGAAAATATTTGTGACTTGTTG 779
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct 717 AAGATGGTGAAGAACACTGCTAATGAAATATTTCCTGATGAGAATATATGTGATTTGTTG 776
Query 780 ATTAGTGGTTGGTGTACTGCTGAGAAACTCGATGAAGCAACTAGGTTAGCTGGTGAGATG 839
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 777 ATTAGTGGATGGTGTATTGCTGAGAAACTCGATGAAGCAACTAGGTTAGCTGGTGAAATG 836
Query 840 TCTAGAGGAGGATTTGAGATAGGAACAAAAGCGTATAACATGATCCTTGATTGTGTTTGT 899
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 837 TCTAGAGGAGGATTTGAGATAGGAACCAAAGCGTATAACATGATGCTTGATTGTGTTTGT 896
Query 900 AAGCTTTGTAGGAAGAAAGATCCGTTTAAGCTTCAACCTGAAGTAGAGAAGGTTTTGCTG 959
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 897 AAGCTTTGTAGGAAGAAAGATCCTTTTAAGCTTCAACCTGAAGTAGAGAAGGTTTTGCTG 956
Query 960 GAAATGGAGTTCCGTGGTGTGCCGAGAAATACAGAGACTTTCAATGTGTTGATTAACAAT 1019
|| |||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 957 GAGATGGAGTTTCGTGGTGTACCTAGAAACACAGAGACTTTCAATGTGTTGATTAACAAT 1016
Query 1020 CTTTGTAAAATCAGGAGAACCGAAGAAGCGATGACATTGTTTGCTAGGATGGGTGAATGG 1079
|||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct 1017 CTTTGTAAAATCAGGAGAACTGAAGAAGCAATGACATTGTTTGGTAGGATGGGTGAATGG 1076
Query 1080 GGTTGTCAACCAGATGCTGAGACTTATCTTGTTCTGATCAGGAGTTTATATCAAGCAGCC 1139
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1077 GGTTGTCAACCAGATGCTGAGACTTATCTTGTTCTGATTAGGAGTTTGTATCAAGCAGCG 1136
Query 1140 AGGATCGGTGAAGGAGACGAAATGATCGATAAGATGAAATCAGCTGGATACGGTGAGTC- 1198
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 1137 AGGATCGGTGAAGGGGACGAAATGATCGATAAGATGAAATCAGCGGGATATGGTGAG-CT 1195
Query 1199 TTTGAATAAGAAAGAGTATTACGGGTTTCTCAAGATATTGTGTGGGATTGAGAGGCTTGA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TTTGAATAAGAAAGAGTATTACGGGTTTCTCAAGATATTGTGTGGGATTGAGAGGCTTGA 1255
Query 1259 GCATGCGATGAGTGTGTTCAAGAGCATGAAAGCTAATGGATGCAAACCTGGGATCAAGAC 1318
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GCATGCGATGAGTGTGTTTAAGAGCATGAAAGCTAATGGATGCAAACCTGGGATCAAGAC 1315
Query 1319 TTATGATTTGTTGATGGGGAAAATGTGTGCGAATAATCAGCTAACTAGAGCTAATGGTTT 1378
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1316 TTATGATTTGTTGATGGGGAAAATGTGTGCGAATAACCAGCTGACTAGAGCTAATGGTTT 1375
Query 1379 GTACAAAGAAGCGGCTAAGAAAGGTATCGCTGTTAGCCCTAAGGAATACAGAGTTGATCC 1438
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1376 GTATAAAGAAGCGGCTAAGAAAGGAATCGCTGTTAGCCCTAAGGAATACAGAGTAGATCC 1435
Query 1439 GCGGTTTTTGAAAAAGAAGACCAAGGAAGTGGATACCAATGTGAAGAAGAGGGAGACTTT 1498
|||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1436 ACGGTTTATGAAAAAGAAGACCAAGGAAGTGGATAGCAATGTTAAGAAGAGGGAGACTTT 1495
Query 1499 ACCTGAGAAAACTGCGAGGAAGAAGAAACGGCTCAAGCAGATCAATATGAGTTTTGTTAA 1558
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 GCCTGAGAAAACCGCGAGGAAGAAGAAACGGCTCAAGCAGATCAATATGAGTTTTGTTAA 1555
Query 1559 GAAACCGCACAATAAGATGAGACGAAGAATGTGATGCTGATGA-TCTTCAACATCTGATA 1617
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1556 GAAACCGCACAATAAGATGAGACGGAGAATGTGATGCTGATGAATCTTCAACATCTGATA 1615
Query 1618 GGATTTTCTAAAGATTATGGTCTTTGTTCTTTCCCTTTTTAAGATTTTGTCAGGAATACT 1677
| |||||||||||||||| ||||||||||||||| |||||||||| |||||| || ||||
Sbjct 1616 GAATTTTCTAAAGATTATTGTCTTTGTTCTTTCC-TTTTTAAGATATTGTCAAGAGTACT 1674
Query 1678 CATGTTTTTGCTTGATCACGAGCAAATTATCCCAATAATCTTTTGGTTTGTCTCAATGTA 1737
||| ||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||
Sbjct 1675 CATCATTTTGCTTGATCATGAGCAAATTGTCCCAATAATCTTTTGTTTTGTCTCAGTGTA 1734
Query 1738 ACGTTTACCCAGAGTTCA 1755
|||||||| ||||||||
Sbjct 1735 ACGTTTACTAAGAGTTCA 1752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86796742305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5