BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496250
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60970.1 | Symbols: TCP5 | TEOSINTE BRANCHED 1, cycloidea an... 1550 0.0
> AT5G60970.1 | Symbols: TCP5 | TEOSINTE BRANCHED 1, cycloidea
and PCF transcription factor 5 | chr5:24535570-24537047 REVERSE
LENGTH=1248
Length=1248
Score = 1550 bits (839), Expect = 0.0
Identities = 951/1003 (95%), Gaps = 15/1003 (1%)
Strand=Plus/Plus
Query 109 ACATGTTGCAACAGCAACGA-CCGAGTTCGGTATCATCATCTTCAAGGCAATGGACTTCA 167
||||||||||||| |||| | |||||||||| | |||||||||||||||||||||||||
Sbjct 251 ACATGTTGCAACAACAAC-AGCCGAGTTCGG--T-ATCATCTTCAAGGCAATGGACTTCA 306
Query 168 GCTTTTAGGAATCCAAGAATCGTTCGAGTCTCAAGAACATTCGGTGGCAAAGACAGACAT 227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GCTTTTAGGAATCCAAGAATCGTTCGAGTCTCAAGAACATTCGGTGGCAAAGACAGACAC 366
Query 228 AGCAAAGTCTGTACGGTCCGTGGTCTTCGAGACCGGAGGATAAGGTTGTCCGTACCTACA 287
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 AGCAAAGTATGTACAGTCCGTGGTCTTCGAGACCGGAGGATAAGGTTGTCCGTACCTACA 426
Query 288 GCTATTCAACTCTACGACCTTCAAGATCGATTAGGGCTGAGTCAGCCAAGCAAAGTCATC 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GCTATTCAACTCTACGACCTTCAAGATCGATTAGGGCTGAGTCAGCCAAGCAAAGTCATT 486
Query 348 GATTGGTTACTCGAAGCAGCAAAAGATGACGTCGACAAGCTACCTCCTCTACAATTCCCA 407
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 487 GATTGGTTACTCGAAGCAGCAAAAGATGACGTAGACAAGCTACCTCCTCTACAATTCCCA 546
Query 408 CATGGGTTTAACCAAATGTATCCAAATCTCATCTTTGGAAACTCCGGGTTTGGAGAATCG 467
||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 547 CATGGATTTAACCAGATGTATCCAAATCTCATCTTCGGAAACTCCGGGTTTGGAGAATCT 606
Query 468 CCATCTTCAACTTCATCAACAGCGTTTCCAGGAACCAATCTCGGGTTCTTGGAAAATTGG 527
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 607 CCATCTTCAACTACATCAACAACGTTTCCAGGAACCAATCTCGGGTTCTTGGAAAATTGG 666
Query 528 GATCTTGGTGGTTCTTCCAGAACAAGATCAAGATTAACCGATACTACTACGACCCAGAGA 587
||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| |||
Sbjct 667 GATCTTGGTGGTTCTTCAAGAACAAGAGCAAGATTAACCGATACAACTACGACCCAAAGA 726
Query 588 GAAAGTTTTGATCTTGATAAAGGAAAATGGATCAAACACGACGAGAATAGTAATCACGAT 647
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 727 GAAAGTTTTGATCTTGATAAAGGAAAATGGATCAAAAACGACGAGAATAGTAATCAAGAT 786
Query 648 CATCAAGGGTTCGACACCAATCATCAACAT---TTTCCACTGACCAATCCTTACAACAAC 704
||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 787 CATCAAGGGTTTAACACCAATCATCAACAACAATTTCCTCTGACCAATCCGTACAACAAC 846
Query 705 ACTTCATCTTATTACAACCTCGGACATCTTCAACAATCGTTAGACCAATCCGGTAATAAC 764
|||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 847 ACTTCAGCTTATTACAACCTTGGACATCTTCAACAATCGTTAGACCAATCTGGTAATAAC 906
Query 765 GTTACTGTCGCAATATCTAATGTTGCTGCTAATAACAACAATAATCTCAATTTGCCTCCT 824
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 907 GTTACTGTCGCAATATCTAATGTTGCTGCTAATAATAACAATAATCTCAATTTGCATCCT 966
Query 825 CCTTCCTCGTCTGCTGGAGATGGATCTCAGCttttttttGGTCCTTCTCCTCCAGCAATG 884
|||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct 967 CCTTCCTCGTCTGCCGGAGATGGATCTCAGCTTTTTTTCGGTCCTACTCCTCCGGCAATG 1026
Query 885 AGCTCTCTATTCCCGACATACCCTTCGTTTCTCGGAGCTTCTCATCATCATCATCATGTC 944
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1027 AGCTCTCTATTCCCGACATACCCTTCGTTTCTTGGAGCTTCTCATCATCATCAT---GTC 1083
Query 945 GTCGATGGAGCCGGTCATCTTCAGCTCTTTAG-TACGAATTCAAATACCGCCTCGCAGCA 1003
|||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||
Sbjct 1084 GTCGATGGAGCCGGTCATCTTCAGCTCTTTAGCT-CGAATTCAAATACCGCATCGCAGCA 1142
Query 1004 ACAGTTGAT-CACGGGTAATACGAGTTTGATTAGACCATTTCATCATTTGATGAGCTCGA 1062
||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 ACACATGATGC-CGGGTAATACGAGTTTGATTAGACCATTTCATCATTTGATGAGCTCGA 1201
Query 1063 ATCATGATACGGATCGTCATAGTAGCGATAATGAATCAGATTC 1105
||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1202 ATCATGATACGGATCATCATAGTAGCGATAATGAATCAGATTC 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54166388055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5