BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496254
Length=2006
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A ... 2922 0.0
> AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A
protein 1-related | chr5:24549578-24552723 REVERSE LENGTH=2076
Length=2076
Score = 2922 bits (1582), Expect = 0.0
Identities = 1878/2019 (93%), Gaps = 28/2019 (1%)
Strand=Plus/Plus
Query 1 ATCGAGAGAGAAAGATGCAGACTTCGGTGACCCCAGATGCTATCTCCACCGTATTGTCAA 60
||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 69 ATCTAGAGAGAAAGATGCAGACTTCGGTGACCCCAGATGCCATCTCCACCGTTTTGTCAA 128
Query 61 ACCCATCCTTTGATTCCTCCTCCGAACGACCTCAAATCGTTGTTCAAGTTGTGGATCTTA 120
|||||||||||||||| || ||||| ||| || | |||||||||||||||||||||||||
Sbjct 129 ACCCATCCTTTGATTCGTCTTCCGATCGATCTGAGATCGTTGTTCAAGTTGTGGATCTTA 188
Query 121 AACCTATCGGCAATCGATATACATTTAGTGCTAATGACGGAAAGACGAAAGTCAAAGCAA 180
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 189 AACCTATCGGCAATCGCTATACATTTAGTGCAAATGACGGAAAGACGAAAGTCAAAGCAA 248
Query 181 TGTTTACACCTACACTCACACCTGAAATTATTTCTGGAAAGATCCAGAATC-TGGGCCTA 239
||||||| || |||||||||||||||| |||||||| ||||||||||| | |||| |||
Sbjct 249 TGTTTACTGCTTCACTCACACCTGAAATCATTTCTGGGAAGATCCAGAA-CTTGGGTCTA 307
Query 240 GTTCGTCTCATTGATTTCACAGTTAACGACATATCAAGCAAATCAACAAAATATTTCCTT 299
||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 308 ATTCGTCTCATTGATTTCACTGTTAACGACATTTCAAGCAAATCTACAAAATATTTCCTT 367
Query 300 GTGAATAAGTGTGAGGCTGTTGGTTCTGTGCTTGATTCTGAGATCAACTTGGAGAGTAAG 359
|||| ||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 368 GTGACTAAATGTGAGGCTGTTGGTTCTGTGCTTGATTCTGAGATTAACTTGGACAGTAAG 427
Query 360 AGC---CATGAGGAGGCTAGTGATCCCAAGAAACAGAAGCTAGAGCATTCTCCTCTCAGT 416
||| | ||||||||| |||| |||||||| ||||| ||||||||||||||| |||||
Sbjct 428 AGCGGAGAGGAGGAGGCTCGTGAGCCCAAGAAGCAGAAACTAGAGCATTCTCCTGTCAGT 487
Query 417 CCTGTGAATGATGTTAAAACGGATGTTTCTACTGGTATCACATTGAAACCCAAGCAGGAA 476
||| ||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct 488 CCTCTGAATGATG-T--------TGTTTCTACTGGTATCACATTGAAACCGAAGCAGGAA 538
Query 477 TTTGTAGCCAAATCAGCCTCTCAGATAATGAGTGAACAGAGGGGAAATGCTGCACCAGCT 536
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 539 TTTGTAGCCAAATCAGCTTCTCAGATAATGAGTGAACAAAGGGGAAATGCTGCACCAGCT 598
Query 537 GCAAGAATGGCCATGACTAGAAGGGTTCATCCACTTGTGTCATTAAACCCCTATCAAGGA 596
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 599 GCAAGAATGGCCATGACTAGAAGGGTTCATCCACTTGTGTCATTAAATCCATATCAAGGA 658
Query 597 AATTGGACCATCAAAGTCCGAGTTACAAACAAGGGAGTCATGAGAAATTACAAAAACGCT 656
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 659 AACTGGACCATCAAAGTCCGAGTTACAAACAAGGGAGTGATGAGAAATTACAAAAACGCT 718
Query 657 AGAGGG-GAAGGATGTGTCTTCAATGTGGAACTTACTGACGAAGAAGGAACACAAATTCA 715
|| ||| |||||||||||||||||||| ||||| || || ||||||||||||||||||||
Sbjct 719 AG-GGGTGAAGGATGTGTCTTCAATGTTGAACTAACAGATGAAGAAGGAACACAAATTCA 777
Query 716 AGCAACAATGTTTAATGATGCTGCAAGGAAGTTTTACGAGAGATTCCAATTGGGAAAGGT 775
|||||| |||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 778 AGCAACGATGTTTAATGATGCTGCAAGGAAGTTTTTTGACAGATTCCAGTTGGGAAAGGT 837
Query 776 CTATTATATATCAAGGGGGTCACTTAAACTTGCTAACAAGCAGTTCAAGACAGTTCAGAA 835
||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 838 TTATTATATATCAAGGGGGTCACTAAAACTCGCTAACAAGCAGTTCAAAACAGTTCAGAA 897
Query 836 TGATTATGAGATGACACTGAATGAAAATTCAGAGGTTGAGGAAGCTAGTAGCGAAGAAAT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TGATTATGAGATGACACTGAATGAAAATTCAGAGGTTGAGGAAGCTAGTAGCGAAGAAAT 957
Query 896 GTTCATCCCTGAGACAAAATTCAACTTTGTACCCATTGAAGAGTTGGGTTTGTATGTAAA 955
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 958 GTTCATCCCTGAGACAAAATTCAACTTCGTACCCATTGAAGAGTTGGGTCTGTATGTTAA 1017
Query 956 TCAGAAGGAGCTTATTGATCTTATCGGAGTTGTTCAAAGTGTATCTCCTACCATGAGTAT 1015
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1018 TCAGAAGGAACTTATTGATCTTATTGGAGTTGTTCAAAGTGTATCTCCTACCATGAGTAT 1077
Query 1016 TAGAAGGAGAACTGACAATGAGATGATTCCTAAGAGGGATATAACTTTGGCTGATGAGTC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TAGAAGGAGAACTGACAATGAGATGATTCCTAAGAGGGATATAACTTTGGCTGATGAGTC 1137
Query 1076 GAAG-AAAACTGTCGTGGTGTCCCTGTGGAACGACCTTGCAACTGGCATAGGTCAAGAAC 1134
||| |||||||| ||||||||||||||||| || |||||||||||||||||||| || |
Sbjct 1138 -AAGGAAAACTGTTGTGGTGTCCCTGTGGAATGATCTTGCAACTGGCATAGGTCAGGAGC 1196
Query 1135 TGCTAGACATGGCTGATAAGTCACCTGTGGTCGCAATCAAGTCTCTCAAAGTTGGAGATT 1194
| ||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1197 TACTAGACATGGCTGATCAGTCACCTGTGATTGCAATCAAGTCTCTCAAAGTTGGAGATT 1256
Query 1195 TTCAAGGTGTTTCATTGTCCACTATCAGCAGAAGCAATGTGGTTATAAACCCGGAATCAC 1254
||||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 1257 TTCAAGGTGTTTCGTTGTCTACCATCAGCAGAAGCAATGTGGTTATTAACCCGGAATCAC 1316
Query 1255 CAGAAGCTAAAAAGTTGAAATCTTGGTTTGATTCTGAAGGCAAGGAAATATCCATGTCTT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 CAGAAGCTAAAAAGTTGAAATCTTGGTTTGATTCTGAAGGCAAGGAAATATCCATGTCTT 1376
Query 1315 CCATTGGCTCAGGGATGAGCCCATCTTCCAAGAATGGATCTCGGTCTATGTATACTGACC 1374
| |||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||||
Sbjct 1377 CTATTGGCTCAGGGATGAGCCCTTCTGCCAAAAATGGATCTCGGTCTTTGTATACTGACC 1436
Query 1375 GAGTCCTTCTCTCACACATCACAAGCAACCCATCTTTAGGCGAAGAGAAGCCTGTATTTT 1434
|||| |||||||| |||||||||||||| ||||||||| |||||| |||||||||||||
Sbjct 1437 GAGTGCTTCTCTCTCACATCACAAGCAATCCATCTTTATTCGAAGAAAAGCCTGTATTTT 1496
Query 1435 TCAGCACCAGGGCTTACATAAGCTTCATCAAACCAGATCAGACAATGTGGTACCAAGCTT 1494
||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1497 TCAGCACTAGGGCTTACATAAGCTTCATCAAACCAGACCAAACAATGTGGTACCAAGCTT 1556
Query 1495 GTAAGACTTGTAACAAGAAAGTGACTGAAGCCCTTGACTCTGGTTACTGGTGTGAAGGAT 1554
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1557 GTAAGACTTGTAACAAGAAAGTGACAGAAGCACTTGACTCTGGTTACTGGTGTGAAGGAT 1616
Query 1555 GCCAGAAAAAATATGAAGAATGCAGCCTAAGGTACATAATGGCGGTGAAAGTCACTGATT 1614
|||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| || |
Sbjct 1617 GCCAGAGAAAGTATGAAGAATGCAGCTTAAGGTACATAATGGCGGTGAAAGTCACCGACT 1676
Query 1615 CATCTGGAGAAACATGGATTTCCTCATTCAATGATGAAGCAGAGAAGATTCTTGGATGTT 1674
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1677 CATCTGGAGAAACTTGGATTTCGTCATTCAACGATGAAGCAGAGAAGATTCTTGGATGTT 1736
Query 1675 CAGCTGATGATCTCAACAAACTAAGATCAGAGGAAGGTGAAGTAAATGAATATCAGACAA 1734
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1737 CAGCTGATGAGCTCAACAAACTAAAATCAGAGGAAGGTGAAGTAAATGAATATCAGACAA 1796
Query 1735 AACTGAAAGAAGCAACGTGGTCATCTCATGTCTTCCGGGTTAGTGTCACTCAGAATGAGT 1794
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1797 AACTGAAAGAGGCAACATGGTCATCTCATGTCTTCCGGGTTAGTGTCACACAGAATGAGT 1856
Query 1795 ATAACGGTGAGAAGAGGCAAAGGGTAACTGTGAAAGGAGTAGCTCCTCTTGATTTTGCTG 1854
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1857 ATAACGGTGAGAAGAGACAGAGGGTAACTGTAAAAGGAGTAGCTCCTCTTGATTTTGCTG 1916
Query 1855 CTGAAACAAGATTGTTGCTCCAAGACATCTCCAACAAGAACAAAGCATCTCAGTAGTTAG 1914
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||
Sbjct 1917 CTGAAACAAGATTGTTGCTTCAAGACATCTCCAACAAGAACAAAACATCTCAGTAGT-AG 1975
Query 1915 -tttt--ttgtttttCCATTCCTCTACTGGCCTAAAAAAGTCT-AAAACTTTGC-TTGTA 1969
|||| || ||||| ||| |||| |||||||||||||||| |||||||| | |||||
Sbjct 1976 CTTTTACTTCTTTTTTT-TTC-TCTATTGGCCTAAAAAAGTCTCAAAACTTTTCCTTGTA 2033
Query 1970 -A-TATAAGCCTTTCTGCAATATATATTATTAGGGTTTT 2006
| |||||||||||||||||| |||| |||||||||||
Sbjct 2034 TAATATAAGCCTTTCTGCAATTTATAAAATTAGGGTTTT 2072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99397079100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5