BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496258
Length=2394
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61040.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 3022 0.0
AT5G08010.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 503 3e-141
> AT5G61040.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G08010.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:24562333-24564959 REVERSE LENGTH=2435
Length=2435
Score = 3022 bits (1636), Expect = 0.0
Identities = 1889/2010 (94%), Gaps = 21/2010 (1%)
Strand=Plus/Plus
Query 390 TTAAAGCCCTGAGCTTTCAACTTCGTTCATTGGATTGGTGTTTGAATTGGAATGGAGAAG 449
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 442 TTAAAGCCCTGAGCTTTCAACTTCTTTCATTGGATTGGTGTTTGAATTGGAATGAAGAAG 501
Query 450 GAGAGATTTTACTGTTAT-TTTTTGGGTTGCTCTCTTGATTCTTGAAGGCAAGAGAGGAC 508
|||||||| ||||||| | ||||||||||||||||||||||| | |||||||||||||||
Sbjct 502 GAGAGATTGTACTGTTGTATTTTTGGGTTGCTCTCTTGATTCCTCAAGGCAAGAGAGGAC 561
Query 509 GAAATGGATATTTGGTTAATCGCAGCTACTGCTGCTACGGGATATATAGCTAAGCAATTG 568
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 562 GAAATGGATGTTTGGTTAATCGCAGCGACTGCTGCTACGGGATATATAGCTAAGCAGTTG 621
Query 569 CAGAATGTAACCAAATGTAAAGATAACGTTCTTGAATCTTCTTCTGAAGATGTGAAGCCA 628
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 CAGAATGTAACCAAAGGTAAAGATAACGTTCTTGAATCTTCTTCTGAAGATGTGAAGCCA 681
Query 629 GAATCTCCTCCTGGGTGCTTGCTTAGCAGATTGGTAAGAGTCAAGAATGCTAATGAAAAC 688
|||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 682 GAATCTCCTCCTGGTTGCTTGCTTAGCAGATTAGTAAGAGTCAAAAAGGCTAATGAAAAT 741
Query 689 AAATTTGGGGATGAGAAAATGATATCGGATGGGGA-AACTCTGGATGCATCTACGAGTGG 747
|| |||||||||||||||||| |||| |||||||| || || |||||||||||||||||
Sbjct 742 AAGTTTGGGGATGAGAAAATGCTATCAGATGGGGATAA-TCCAGATGCATCTACGAGTGG 800
Query 748 AGAGAA-TTCGGGATATTACGAAGCTAACCGTTCAGATACTTTGTTCGGTTTGATGCCCG 806
|| || || |||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 801 GGA-AAGCTCAGGATATTACGAAACTAACCATTCAGATACTTTGTTCGGTTTGATGCCCG 859
Query 807 AGTTCTCTGAGATGGAACAT-GGGAATTGGAAAACCAGTGCTACTCTTGCAGGTGACACA 865
||||| | |||||||||| | |||| |||||||||||||| || ||||| ||||||||||
Sbjct 860 AGTTCCCGGAGATGGAAC-TGGGGACTTGGAAAACCAGTGGTAATCTTGTAGGTGACACA 918
Query 866 CAGTTGAATTCTTTATTTAGGAGAAACCAGCGGTTCAGGCGATTAGCCAAACCTTTGAGT 925
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 919 CAGTTGAATTCTTCATTTAGGAGAAACCAGCGGTTCAGGCGATTAATCAAACCTTTGAGT 978
Query 926 TCGATGGATAGCTGCTTAATGTCTCGGTTTCATAGAGAACAAATGACCATGGAAGATTAC 985
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 979 TCGATGGATAGCTGCTTAATGTCTCGGTTTCATAGAGAACAAATGACCATAGAAGATTAC 1038
Query 986 ATGACTAGCCCATTTCCATCGCCACACGCTTCAGTTTCAAGGCCATTACTTGTGACTGAT 1045
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1039 ATGACTAGCCCATTTCCATCACCTCACGCTTCAGTTTCAAGGCCATTACTTGTCACTGAT 1098
Query 1046 GGTACTCAAGTAATTAGCAAGAGCGCTGCAGATTCTTTGTGGCTGAGCCAACATGTTATT 1105
||||||| ||||||||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 1099 GGTACTCGAGTAATTAGCAAGAGTGCTGCAGATTCTTTGTGGCTGAGCCAACATATTGTT 1158
Query 1106 CTCAATGAAGATAACTCTACACAAAGTTGCGGAATCCCCTGG-TTGGATTCTTCGGTTGA 1164
|||| ||||||||| ||||| |||||| ||| ||||| || |||| |||||| ||
Sbjct 1159 CTCAGTGAAGATAAGGCTACATTAAGTTGTGGAGTCCCC-GGAGTGGAGTCTTCGATT-- 1215
Query 1165 GAGAAGGAGAAGAGTGGGAAATGAGAAGACCAAGAGTAGAAAACATGGACAAGGTGATGC 1224
||| ||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1216 ------GAG-AGAGTGGGAAATGAGAAGAGCAAGAGTAGAAAACATGGACTAGGTGATGC 1268
Query 1225 AACAATGTTGCTACAAATCGGGATCTCGATTGGCATCATATCCTCGTTCATGGCAAGCCA 1284
|||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1269 AACAATGTTGTTACAAATCGGGATCTCGATTGGCATCATGTCCTCATTTATGGCAAGCCA 1328
Query 1285 AGCCGAAGTGAGCAAAGTCAAACAAGAGCTGAAGCAAACAGAGAACTTGGTGCATGATTT 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 AGCCGAAGTGAGCAAAGTCAAACAAGAGCTGAAGCAAACAGAGAACTTGGTGCATGATTT 1388
Query 1345 AGAAGATGAGCTTGAGATGAAAGACTCGTTGATAGTGAAGGAGATAGATATTGAAAAGGC 1404
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1389 AGAAGATGAGCTTGAGATGAAAGACACGTTGATAGTGAAGGAGATAGATATTGAAAAGGC 1448
Query 1405 AGCTGACAATTCAGAATCTATAAGTAATATTGAAGCAGAGCTTGAAGCTGAACTTGAAAG 1464
|||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1449 AGCTGAGAGTTCAGAATCTATAAGTAATATTGAAGCAGAGCTTGAAGCGGAACTTGAAAG 1508
Query 1465 GCTAGAAATTAACATGAACTCCTCCAACATTGAGACAAGACTCTCTGATATGATAGAGAT 1524
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1509 GCTAGAAATTAACATGAATTCCTCCAACATTGAGACAAGACTCTCTGATATAATAGAGAT 1568
Query 1525 GGAGCCGGATTGTGAGGTAGAATTTGCACAGGGTGAACTGAGAGCTGATCGGGTTAAAGG 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 GGAGCCGGATTGTGAGGTAGAATTTGCACAGGGTGAACTGAGAGCTGATCGGGTTAAAGG 1628
Query 1585 GAAGCGTTTAGATGAAACTGAGTCCAACCAAGACCCAAGTGGTAACTCCACACCTGAGTC 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GAAGCGTTTAGATGAAACTGAGTCCAACCAAGACCCAAGTGGTAACTCCACACCTGAGTC 1688
Query 1645 AGGAAACTATGCTGTCTCACCTCGCGAATTGAGCTTGCGGTTGCATAAAGTTATCAATTC 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 AGGAAACTATGCTGTCTCACCTCGCGAATTGAGCTTGCGGTTGCATAAAGTTATCAATTC 1748
Query 1705 ACGCCTTGAGAAACGGATTGAAGAGCTCGAGACTGCACTCCAAGAGAGCCAAAGAAAGGT 1764
||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1749 ACGTCTTGAGAAACGGATTGGAGAGCTCGAGACTGCACTCCAAGAGAGCCAAAGGAAGGT 1808
Query 1765 GGAGCAGCTGGTCATGGAATCAGAGAGCAAGAAGAGGTCATGGTCAAGGTTATGGGAAAC 1824
|||||||| |||||||||||||| |||||||||| |||||||||||| |||||||||||
Sbjct 1809 AGAGCAGCTAGTCATGGAATCAGAAAGCAAGAAGAAGTCATGGTCAAGATTATGGGAAAC 1868
Query 1825 TCGTGAAGTGATGACATATAAGAGTGACTCGAATATCCCAGTTGCTATTGAGCACACCAA 1884
|||||||||||||| ||||||||||| || || |||||||||||||| |||||||||||
Sbjct 1869 CCGTGAAGTGATGACCTATAAGAGTGAATCAAAAATCCCAGTTGCTATAGAGCACACCAA 1928
Query 1885 GACTAATCCTGCTGAGATGCAACCGCTGGTTATGAACTTAACTGGGGAAGCACTTGATGC 1944
|||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1929 GACTAATCTTGCGGAGATGCAACCCCTGGTTATGAACTTAACTGGGGAAGCACTTGATGC 1988
Query 1945 ATTCAATGAGTCTTACGACGAATTGATGAAAATAAACGATGACTCGGAAGATGATGATGA 2004
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1989 ATTCAATGAGTCTTACGACGAATTGATGAAAATAAACGATGACTCGGAAGATGATGATG- 2047
Query 2005 TGGTGATTCACCGTTAGAGATGCAAGAGAGCAGGATTCACCAAGAAGATTTCTCTTCAAC 2064
| ||||||||| || ||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 2048 -G-TGATTCACCATTGGAGATGCAAGATAGCGGGATTCACCAAGAAGATTTATCTTCAAC 2105
Query 2065 AAACAAAAGCTCACCTTGGAGCCATCAGAAGGACGATTTCAAGGTGCAAGAGCAGGAACT 2124
||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||
Sbjct 2106 AAACAAAAGCTCACCTTGGAGCCATCACAAGGATGATTTCAAGGTGCAGGAGCAGGAGCT 2165
Query 2125 GCTAGACCTTATTGGTATTGAAGACGAAGAAGAAGAAAGCAATGACTTTGAGAGTGAAAT 2184
|||||||||||||||||||||||||||||||||| |||||| |||||||| || ||||||
Sbjct 2166 GCTAGACCTTATTGGTATTGAAGACGAAGAAGAAAAAAGCAGTGACTTTGTGAATGAAAT 2225
Query 2185 GCAGAAGCAACTGATAAAGCAGATTGTTGAGAAAACAAAACAAGGGTCTCCTGTTGTGTT 2244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2226 GGAGAAGCAACTGATAAAGCAGATTGTTGAGAAAACAAAACAAGGGTCTCCTGTTGTGTT 2285
Query 2245 GAATGCTCAGAAGATGCTATTTCTCATGGAAGAAACTGAACATAATCTGTAACATTAGGC 2304
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2286 GAATGCACAGAAGATGCTATTTCTCATGGAAGAAACTGAACATAATCTGTAACATTAGGC 2345
Query 2305 AGCATTAGAGTTTTGCGTGGATGGAATTCTTAAGGTCTGGTTAGTGTGTAGACCACAAGC 2364
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2346 AGCATTAGAGTTTTGCGTGGATGGAATTCTTAAGGTCTGGTTAGTGTGTAGGCCACAAGC 2405
Query 2365 AAAGTTGAAACAAAGCTCACtttttttGTT 2394
|||||||| ||| ||||||||||||| |||
Sbjct 2406 AAAGTTGATACAGAGCTCACTTTTTTGGTT 2435
Score = 420 bits (227), Expect = 4e-116
Identities = 320/361 (89%), Gaps = 21/361 (6%)
Strand=Plus/Plus
Query 1 AAGATAATGAAAAA-TAAAACACAGAGCCGTTCGTTTTGCTGATTCGATTGTACCAACTT 59
|||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 8 AAGATAAT-AAAAATTAAAACACAGAGCCGTTCGTTTGGCTGATTCGATTGTACCAACTT 66
Query 60 CCGACAAAG-----A----TTCCGATTGTTCGATTTCTTATACCTTGAGCTTCTCCATTG 110
||||||||| | ||||||||||||||||||||| |||||||||||||||||||
Sbjct 67 CCGACAAAGATTCCACCTTTTCCGATTGTTCGATTTCTTAGACCTTGAGCTTCTCCATTG 126
Query 111 GTTCATTGATCATTTCTTGAAGCTACACAAG---CAAGTTGCAAGTTGCAAATTTCACCT 167
|||||| ||||||||||| |||| | | ||| | || ||||||||||| ||
Sbjct 127 GTTCATCGATCATTTCTTCAAGC-A-A-AAGTCTCTCTTTTTTCTTTGCAAATTTCGCCC 183
Query 168 AAAGG-AAAGGGTACACGTTGTTACTGCTCCTCACCTTATCCCTGACGGAAAAATCAAAG 226
||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct 184 AAAGGAAAAGGGTACACGTTGTTACAGCTCCTCACCTTATCTCTGACGGAAAAATCGAAG 243
Query 227 CTTTCTCTGGGTTTTGCTCAGTAGTAATTCGATTTCCGCATAGTTTTGGTACAAAGTGG- 285
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 244 CTTTCTCTGGGTTTTGCTCAGTAGTAATTCGATTTCCGTATAGTTTTGGTACAAAGTGGA 303
Query 286 AGGG-TTTGGGCATTGCTCT-CGACCTGATTCCTGCGTTTTTAGGTCTCTCCTTGAGGTT 343
|||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 304 AGGGTTTTGGGCATTGCTCTGTGGCCTGATTCCTGCGTTTTTAGGTCTCTCCTTGAGGTT 363
Query 344 G 344
|
Sbjct 364 G 364
> AT5G08010.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G61040.1);
Has 5732 Blast hits to 4319 proteins in 440 species: Archae
- 66; Bacteria - 397; Metazoa - 2437; Fungi - 292; Plants
- 238; Viruses - 35; Other Eukaryotes - 2267 (source: NCBI BLink).
| chr5:2569606-2571734 FORWARD LENGTH=1822
Length=1822
Score = 503 bits (272), Expect = 3e-141
Identities = 725/930 (78%), Gaps = 86/930 (9%)
Strand=Plus/Plus
Query 1396 TGAAAAGGCAGCTGACAATTCAGAATCTATAAGTAATATTGAAGCAGAGCTTGAAGCTGA 1455
||||||| |||| || |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 795 TGAAAAGACAGCAGAGAATTCAGAATCTATAAGTAAAATTGAAGCAGAACTTGAAGCTGA 854
Query 1456 ACTTGAAAGGCTAGAAATTAACATGAACTCCTCCAACATTGAGACAAGACTCTCTGATAT 1515
|||||||||||| || || ||||||| ||||||||||||||||||| |||||| ||| |
Sbjct 855 ACTTGAAAGGCTGGAGATCAACATGATTTCCTCCAACATTGAGACAAAACTCTCAGATGT 914
Query 1516 GATAGAGATGGAGCCGGATTGT-GAGGTAGAATTTGCACAGGGTGAACTGAGAGCTGATC 1574
| ||| ||||||| |||| | || ||||||||||| |||||||| ||||||| |||||
Sbjct 915 CTTTGAGCTGGAGCCAGATT-TCGAAGTAGAATTTGCGCAGGGTGAGCTGAGAGATGATC 973
Query 1575 GGGTT-AAAGGGA-AGCGTTTAGATGAAACTGAGTCCAACCAAGACCCAAGTGGTAACTC 1632
|||| ||| || ||||||| |||||||| | ||||||||| || | ||| | || ||
Sbjct 974 AGGTTGAAA--GACAGCGTTTTGATGAAACCGTGTCCAACCAGGAACGGAGTAGCAATTC 1031
Query 1633 CACACCTGAGTCAGGAAACTATGC-T-GTCTCACCTCGCGAATTGAGCTTGCGGT-TGCA 1689
||||||||| ||||||||||| | | ||||||||||| || || ||||||| || |||
Sbjct 1032 CACACCTGAATCAGGAAACTA--CATAGTCTCACCTCGTGAGTTAAGCTTGC-GTCTGCT 1088
Query 1690 TAAAGTTATCAATTCACGCCT-TGAGAAACGGATTGAAGAGCTCGAGACTGCAC-TCCAA 1747
| ||||||||||||| | || ||| |||||||| |||| || |||| ||| | | |||
Sbjct 1089 TGGAGTTATCAATTCATG-CTATGAAAAACGGATAAAAGAACTTGAGAATGC-CTTACAA 1146
Query 1748 GAGAGCCA-AAGAAAGGTGGAGCAGCTGGTCATGGAATCAGA-GAGCAAGAAGAGGTCAT 1805
||||| || | |||| ||||||||||||||||| |||||||| || ||||||| |||
Sbjct 1147 GAGAGTCAGAGGAAA-GTGGAGCAGCTGGTCATAGAATCAGAGGA-AAAGAAGAAACCAT 1204
Query 1806 GGTCAAGG-TTATGGGAAACTCGTGAAGTGATGACATATAAGAGTGACTCGAATAT-C-C 1862
||||||| || |||||||| | ||||| ||||| ||||||||| | ||| || || | |
Sbjct 1205 TGTCAAGGATT-TGGGAAACCCATGAAGAGATGAAATATAAGAGGGGCTC-AA-ATCCTC 1261
Query 1863 CAGTTGCTATTGAGC--ACA-CCAAG--AC-TAATCCTGCTGAGATGCAACCGCTGGTTA 1916
||||| || | | | | | ||| || ||||||||| ||||| ||||| |||||||
Sbjct 1262 CAGTTTCTGTAGCTCATATAGAGAAGAAACATAATCCTGCAGAGATCCAACCTCTGGTTA 1321
Query 1917 TGAAC-TTA-ACTGGGGAAGCACTTGATGCATTCAATGAGTCTTACGACGAATTGATGAA 1974
|| || ||| | |||||||||||||| ||||||||||| |||||||| ||| ||||| |
Sbjct 1322 TG-ACTTTAGA-AGGGGAAGCACTTGACGCATTCAATGAATCTTACGAGGAACTGATGGA 1379
Query 1975 AATAAACGA-TGACTCGGAAGATGATGATGATGGTGATTCACCGTTAGAGATGCAAGAGA 2033
|| ||||| | | || ||||| | || ||| | | || | | | ||||| || ||
Sbjct 1380 TATTAACGACT-ATTCAGAAGA--A-GACGAT--T--TACAATG-T-GTGATGC-AG-GA 1427
Query 2034 GCAGGATTCACCAAGAAGATTTCTCTTCAACAAACAAAAGCTCACCTTGGAGCCAT-CAG 2092
| | || | |||||||| || |||| || | |||||||||||||||||||||| ||
Sbjct 1428 GAATGA-GCGGCAAGAAGAATTGTCTTTGACGAGCAAAAGCTCACCTTGGAGCCATAAAG 1486
Query 2093 ---A-A-GGACGA-T-TTCAAG--GTGCAAGAGCA-G-GAA------C-TGCT---AGAC 2131
| | | || | |||||| | | |||| | | ||| | |||| |||
Sbjct 1487 ATTACATAAAGGATTCTTCAAGAACTTC-AGAGGATGTGAATTTGTCCATGCTGCAAGAT 1545
Query 2132 CTTA-TTGGTATTGA-AGACGAAGAAGAAGAAAGCAATGACTTTGAGAGTGAAATGCAGA 2189
| || ||||| ||| ||||||||||||| ||| || || ||| ||| ||| |||
Sbjct 1546 C-TACTTGGT-CTGAGCGACGAAGAAGAAG-AAG-AA-GA-----AGA-TGAGATGGAGA 1594
Query 2190 AGCAACTGATAAAGCAGATTGTTGAGAAAACAAAACAAGGGTCTCCTGTTGTGTTGAATG 2249
|||| ||||||||||||||||||||||||||||| ||||||||| ||| |||||| ||||
Sbjct 1595 AGCATCTGATAAAGCAGATTGTTGAGAAAACAAAGCAAGGGTCTTCTGCTGTGTTAAATG 1654
Query 2250 CTCAGAAGATGCTATTTCTCATGGAAGAAA 2279
| ||||| |||||||| |||||||||||||
Sbjct 1655 CCCAGAAAATGCTATTCCTCATGGAAGAAA 1684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118874890560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5