BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496261
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61090.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 1048 0.0
> AT5G61090.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr5:24574902-24577714 REVERSE
LENGTH=2103
Length=2103
Score = 1048 bits (567), Expect = 0.0
Identities = 647/686 (94%), Gaps = 4/686 (1%)
Strand=Plus/Plus
Query 376 AACTCACTAGGACTTGTACCAGAAACTGCTTCTCAAATTGATACA-GATTTTGATGATGG 434
||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1420 AACTCACTAGGACTTGTTCCAGAAACTGCTTCTCAAATTGATA-ATGATTTTGATGATGG 1478
Query 435 GGATGTTGTTGACATGGACATAGACACTGAATGCCTGACCCCAAGTGTGGCTCTGAAGCT 494
|| |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||
Sbjct 1479 GGGTGTTGTTGACATGGACTTAGACAATGAATGCCTGACCCCGCGTGTGGCTCTGAAGCT 1538
Query 495 AATTACAGAATCACAAAACACTCCCTCAAGATCACCAGAGAAGGTGAACAGAGAAACAAG 554
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 1539 TATTACAGAATCACAAAAAACTCCCTCAAGATCACCGGAGAAGGTGAAGGGAGAAGCAAG 1598
Query 555 TTTACCTCCTGGTTTCGAGAAGATATGGACACCACCTTTTGTGAAACTTAATATACAAGG 614
| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1599 TGTACCTCCTGGTTTCGAGAAGATATGGACACCACCCTTGGTGAAACTTAATATACAAGG 1658
Query 615 AACTTCAAACCCTCTATCTGATCTATCCGGATCGGCTGGAATAGTGCGTGATCAATCAGG 674
||| ||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||
Sbjct 1659 AACATCAAACCCTCTGTCTGATCTAACCAGATCGGCTGGAATAGTGCGTGACCAATCAGG 1718
Query 675 GAAGTGGGTGTTTGGGTACATCAGGTGCCATAGGAGCATCCCTGAAGTCGCAGCTGGGCT 734
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1719 GAAGTGGGTGTTTGGGTACATCAGGTGCCATAAGAGCATCCCTGAAGTCGTAGCTGGGCT 1778
Query 735 TTTGGCTATATACCATGGCCTGAAATTTCTGTGGGACAGCGGTTTCCGAAGAATCCACTT 794
||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 1779 TTTGGCTATATACCAAGGCCTCAAATATCTCTGGGACAGCGGTTTCCGAAGAATCCACTT 1838
Query 795 GGAGACAACAAGCTTTGAGATCATCAATGCTCTAACAACAAGATCGTCCCTGTTTTGTAA 854
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1839 GGAGACAACAAGCTTTGAGATCATCAATGCTCTAACAACAAAATCGTCCCTGTTTTGTAA 1898
Query 855 AAGGAAAACGCTTCTGGG-GTCGTGCAAGGACATGATATTGAAGGAGTGGGAGTGTGACA 913
||| ||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 1899 AAGTAAAACGCTTCTAGGAG-CGTGCAAGGACATGATATTGAAGGAGTGGGAGTGTGACA 1957
Query 914 TTTACCATATCTCCAAAGAACAGAACTCGTGTGCAGAATGGTTAGCAAAGAGATCAGAAG 973
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1958 TTTACCATATCTCCAAAGAACAGAACTCATGTGCAGAATGGTTAGCAAAGAGATCAGAAG 2017
Query 974 AACAGCCTCAAGAATTAGTTTTCTTCGAATACCCTCCTCGTGGCCTTGTGGATCTTCTGG 1033
||||||||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||
Sbjct 2018 AACAGCCTCAAGAATTAGTTTTCTTTGAATACCCTCCTCGAGGCCTTATGGATTTTCTGG 2077
Query 1034 AGAAAGACCGCCTTGCAGCTATATAG 1059
|||||||||||||||||||||| |||
Sbjct 2078 AGAAAGACCGCCTTGCAGCTATGTAG 2103
Score = 357 bits (193), Expect = 1e-97
Identities = 211/220 (96%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 1 ATGGATTCTGCCTCGCCTCCTGAGTTTGACTGCGAGTTTTGGTCTAAACCGGCATCCAAT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 ATGGATTCTGCCTCGCCGCCTGAGTTTGACTGCGAGTTTTGGTCTAAACCGGCATCCAAT 1074
Query 61 ATCACAAGGATGGCACTCAGACGTTCAAAGGCAATGCCTGCATTACTCAAGGTCGAATTG 120
|||| |||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1075 ATCAGGAGGAAGGCCCTCAGACGTTCAAAGGCAATGCCTGCGTTACTCAAGGTCGAACTG 1134
Query 121 CTTCCTACATGCCACATTCTGAATGATGTGTCTGGCAGAAGCCCAACGCTATTGAATGTC 180
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1135 CTTCCTACATGCCACATTCTAAATGATGTGTCTGGCAGAAGCCCAACTCTATTGAATGTC 1194
Query 181 GAAATGTACCTTTTCCCAGATGAGAAGAAAACAGAAAGGT 220
||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GAAATGTACCTTTTCCCAGATGAGAAGAAAACAGAAAGGT 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5