BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496263 Length=1705 Score E Sequences producing significant alignments: (Bits) Value AT5G61120.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 2165 0.0 > AT5G61120.1 | Symbols: | BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G61090.1); Has 125 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr5:24582303-24585806 REVERSE LENGTH=1656 Length=1656 Score = 2165 bits (1172), Expect = 0.0 Identities = 1339/1419 (94%), Gaps = 14/1419 (1%) Strand=Plus/Plus Query 1 CACTCTCTCTCTTACTGGTCCCTCAAGCT-CCACCACCTTCCCCACATTTCTTCCCCATT 59 |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 CACTCTCTCTCTAACTGGTCCCTCAAGCTCCCACCACCTTCCCCACATTTCTTCCCCATT 60 Query 60 CTCTCTCTAAACCCATTT-TTTATTCTCAGCT--AAAAATCAAAACTTTCCGACGAGTTT 116 ||||||||||| |||||| ||| ||||||||| ||||||| |||||||||||||||||| Sbjct 61 CTCTCTCTAAAACCATTTCTTTTTTCTCAGCTACAAAAATCGAAACTTTCCGACGAGTTT 120 Query 117 TCAACATTAGGGCTTCATAC-GCAAGAAGCATTACCGTTGAATGTTAAAAGATGTT-CTT 174 | ||||||||| |||||| | ||||||||||||||||| | ||| | ||| || || Sbjct 121 TTAACATTAGGACTTCATTCGGCAAGAAGCATTACCGTAGTATG-T--CGGAT-TTGATT 176 Query 175 T---TTGACATGAGATATGGCTGGATTGAATCTATCAAAGAGGTCAATTTGTGAAACATG 231 | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 177 TAAGATGACATGAGATATGGCTGCATTGAATCTATCAAAGAGGTCAATTTGTGAAACATG 236 Query 232 TGGACATCAAGGATGGAAGGATTCACTTGTAACTTGCTCTAAATGCCGCATAGCCTGTGA 291 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 237 CGGACATCAAGGATGGAAGAATTCACTTGTAACTTGCTCTAAATGCCGCATAGCCTGTGA 296 Query 292 ACACTGTTATTGCATGCGGGAGAATTCATTTGAGACCTCAACACATTTTGTCTGTGCTGA 351 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 297 ACACTGTTATTGCATGCGGGAGAGTTCATTTGAGACCTCAATACATTTTGTCTGTGCTGA 356 Query 352 TTGTTCGATGAGACCTGTTCAAAACAGATTTACTTCAGATTCTATCAAAGCAGTCCCTCG 411 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| | Sbjct 357 TTGTTCGATGAGACCTGTTCAAAACAAATTTACTTCAGATTCTATCAAAGGAGTCCCTAG 416 Query 412 AAGTAATAGGAATAAAGTGCGGGTGGAATCTTCAAATCCAGTTCCTAAATGGaaaaaaaT 471 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 417 AAGTATTAGGAATAAAGTGCGGGTGGAATCTTCAAATCCAGTTCCTAAATGGAAAAAAAT 476 Query 472 TCCTGAAACGTCAAAGATGAAGTTAATTTCACCAGAGGAAGTaaaaaaaCTTTCATGTGG 531 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 477 TCCTGAAACGTCAAGGATGAAGTTAATTTCACCAGAGGAAGTAAAAAAACTTGCATGTGG 536 Query 532 AGGCAGTACAAGTAAATCAACTTTCAGAGTACCAAGACCTGTTTCAGCTCGTCCTCCAAT 591 ||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 537 AGGCAGTACCAGTAAACCAACTTTTAGAGTACCAAGACCTGTTTCAGCTCGTCCTCCAAT 596 Query 592 GGGTTTAACAAAACAAACTGCTGGCTTTCCAAGAGCTAGGAGTCTAAATTCTGCAGTGGT 651 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 597 GGGTTTAACAAAACCAACTGCTGGCTTTCCAAGAGCTAGGAGTCTAAATTCTACAGTGGT 656 Query 652 GGCTCGCAAAACCAATTCAAATCACCTTCCACCTAAACAGGTTGAGCCTCTTAGTCCTCG 711 ||||||||||||||| |||| | |||||||||||||| |||||||||||||||||||||| Sbjct 657 GGCTCGCAAAACCAAATCAATTTACCTTCCACCTAAAAAGGTTGAGCCTCTTAGTCCTCG 716 Query 712 TACTCAGCAGATTCGTCCAGGAGTCATGAGACAAGCTTCTAAAGCACAAGCAGTAGGAGA 771 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 717 TACTCAACAGATTCGTCCAGGGGTCATGAGACAAGCTTCTAAAGCACAAGCAGTAGGAGA 776 Query 772 AGGGTCAAAAACGAAAGTTGGTGGTGGAGCTAAATATCATGGTACCAACGAGATATGCCG 831 |||||||||| | |||||||| | ||||||||||||||||| | |||||||||||||||| Sbjct 777 AGGGTCAAAATCAAAAGTTGGCGATGGAGCTAAATATCATGATTCCAACGAGATATGCCG 836 Query 832 ATCAATCTTATCAGAGAAATTGTTGCAATTACTTCCATATCGACCAGCTTTGCACCCCAT 891 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 ATCAATTTTATCAGAGAAATTGTTGCAATTACTTCCATATCGACCAGCTTTGCACCCCAT 896 Query 892 CTGGAAGGGACGCATTGTGGATTCTGCTACACCATCTGAGTTTAATGGCGAGTTCTTAGC 951 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 TTGGAAGGGACGCATAGTGGATTCTGCTACACCATCTGAGTTTAATGGCGAGTTCTTAGC 956 Query 952 TCAACCGGCATCTAAAGTCCGAGGGAAGGCTTATGTACTTTCAAAGGCGGTTCCTGTCTT 1011 |||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 957 TCAACCGGCATCTAAAGTCCGAGGGAAGGCTTATATACTTTCAAAAGCTATTCCTGTCTT 1016 Query 1012 ACTCAAGGTCAAATTGGTTCCTATAGGTAATCTTCTGAGTGATTTGTTTATGAACAGAAA 1071 ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 1017 ACTCAAGGTCAAATTGGTTCCTATAGGCAATCTTCTGAGTGGTTTGTTTATGAACAGAAA 1076 Query 1072 ACCAGGGCTTTCAGATGTCGAGATGTACATTTTCCCATATGAAAAGAACACAAAAAGGTT 1131 ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct 1077 ACCAGGGCTTTCAGATGTCGAGATGTACATTTTCCCAGATGACAAGAACACAAAAAGGTT 1136 Query 1132 TACGGAGGAACGTGATCATCTCTTTGAGGCCATGAGGACTCGCAATGCCATGATCAAATT 1191 ||| | ||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| Sbjct 1137 TACAGCGGAACGTGATCATATCTTTGAGGCCATGAGGATTCGCAATGCCATGATGAAATT 1196 Query 1192 TAATATCAATGGCACACCATTGTTGATATTCTCTTCAAAACTATTGGACAAGTCCTCCCA 1251 ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1197 TAACATCAATGGCACACCATTGTTGATATTCTCTTCAAAACTACTGGACAAGTCCTCCCA 1256 Query 1252 GATTATCATCAAGATGCAGAAGAAAACAAATAACTTCCTTTGGGGGATTTTTCTCCTTAC 1311 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1257 GATTATCATCAAGATGCAGAAGAAAACAAATAACTTCCTTTGGGGGATTTTTCTCCTGAC 1316 Query 1312 AAAAAAGTCTTTAGCACTTCTTCCAGGAACTTCCAATCAAACTCCCCAACATTTTGATGA 1371 ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1317 GAAAAAGTCTTTAGCACTTCTTCCAGGAACATCGAATCAAACTCCCCAACATTTTGATGA 1376 Query 1372 TGGAGATGTAGTTGACAATGACACTGAAACCCTTCATCA 1410 |||| ||||||||||||||||||||||| || ||| ||| Sbjct 1377 TGGATATGTAGTTGACAATGACACTGAA-CCTTTCTTCA 1414 Score = 300 bits (162), Expect = 3e-80 Identities = 215/239 (90%), Gaps = 9/239 (4%) Strand=Plus/Plus Query 1473 ACCACCGGAATTCTGGTAAAG-AATTGTAGAGACATTACAGG-GAGAGGGACTGATC-AA 1529 |||||||||||| ||| ||| ||||| |||||||||| || ||||||| ||||| || Sbjct 1421 ACCACCGGAATTGTGG-GAAGCAATTGCAGAGACATTA-TGGTCAGAGGGATTGATCAAA 1478 Query 1530 TGTGGAGTGGCTGATGTTGTCTCTAGGAAATTGGTATATAGATTAGTGCTACTAATCTCT 1589 || ||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 1479 TGGGGAGTGGCTTATGTTGTCTCAAGGAAATTGCTATATAGATTAGTGCTACTAATCTCT 1538 Query 1590 GATTGT---GTTCTATATTGGTGTAAGAAGTAAAAAATTTAGCCCTTGTGTTACTTTTTT 1646 |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1539 GATTGTACTGTTCTATATTGGTGTAAGAAGTAAAAAATTTAACCCTTGTGTTACTTTTT- 1597 Query 1647 ACCTCCTGATTACTTGTAGATTTTTATGGGGTACTGAATAAAGGTTATATTGTTTATAT 1705 ||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||||| Sbjct 1598 ACCTCCTGATTGCTTGTAGATTTTTATGGGGTATTAAATAAAGGTTAGATTGTTTATAT 1656 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84286715055 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5