BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496263
Length=1705
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61120.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 2165 0.0
> AT5G61120.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Polynucleotidyl transferase, ribonuclease H-like superfamily
protein (TAIR:AT5G61090.1); Has 125 Blast hits to
115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa
- 22; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr5:24582303-24585806 REVERSE
LENGTH=1656
Length=1656
Score = 2165 bits (1172), Expect = 0.0
Identities = 1339/1419 (94%), Gaps = 14/1419 (1%)
Strand=Plus/Plus
Query 1 CACTCTCTCTCTTACTGGTCCCTCAAGCT-CCACCACCTTCCCCACATTTCTTCCCCATT 59
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 CACTCTCTCTCTAACTGGTCCCTCAAGCTCCCACCACCTTCCCCACATTTCTTCCCCATT 60
Query 60 CTCTCTCTAAACCCATTT-TTTATTCTCAGCT--AAAAATCAAAACTTTCCGACGAGTTT 116
||||||||||| |||||| ||| ||||||||| ||||||| ||||||||||||||||||
Sbjct 61 CTCTCTCTAAAACCATTTCTTTTTTCTCAGCTACAAAAATCGAAACTTTCCGACGAGTTT 120
Query 117 TCAACATTAGGGCTTCATAC-GCAAGAAGCATTACCGTTGAATGTTAAAAGATGTT-CTT 174
| ||||||||| |||||| | ||||||||||||||||| | ||| | ||| || ||
Sbjct 121 TTAACATTAGGACTTCATTCGGCAAGAAGCATTACCGTAGTATG-T--CGGAT-TTGATT 176
Query 175 T---TTGACATGAGATATGGCTGGATTGAATCTATCAAAGAGGTCAATTTGTGAAACATG 231
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 177 TAAGATGACATGAGATATGGCTGCATTGAATCTATCAAAGAGGTCAATTTGTGAAACATG 236
Query 232 TGGACATCAAGGATGGAAGGATTCACTTGTAACTTGCTCTAAATGCCGCATAGCCTGTGA 291
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CGGACATCAAGGATGGAAGAATTCACTTGTAACTTGCTCTAAATGCCGCATAGCCTGTGA 296
Query 292 ACACTGTTATTGCATGCGGGAGAATTCATTTGAGACCTCAACACATTTTGTCTGTGCTGA 351
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 297 ACACTGTTATTGCATGCGGGAGAGTTCATTTGAGACCTCAATACATTTTGTCTGTGCTGA 356
Query 352 TTGTTCGATGAGACCTGTTCAAAACAGATTTACTTCAGATTCTATCAAAGCAGTCCCTCG 411
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
Sbjct 357 TTGTTCGATGAGACCTGTTCAAAACAAATTTACTTCAGATTCTATCAAAGGAGTCCCTAG 416
Query 412 AAGTAATAGGAATAAAGTGCGGGTGGAATCTTCAAATCCAGTTCCTAAATGGaaaaaaaT 471
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AAGTATTAGGAATAAAGTGCGGGTGGAATCTTCAAATCCAGTTCCTAAATGGAAAAAAAT 476
Query 472 TCCTGAAACGTCAAAGATGAAGTTAATTTCACCAGAGGAAGTaaaaaaaCTTTCATGTGG 531
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 477 TCCTGAAACGTCAAGGATGAAGTTAATTTCACCAGAGGAAGTAAAAAAACTTGCATGTGG 536
Query 532 AGGCAGTACAAGTAAATCAACTTTCAGAGTACCAAGACCTGTTTCAGCTCGTCCTCCAAT 591
||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 537 AGGCAGTACCAGTAAACCAACTTTTAGAGTACCAAGACCTGTTTCAGCTCGTCCTCCAAT 596
Query 592 GGGTTTAACAAAACAAACTGCTGGCTTTCCAAGAGCTAGGAGTCTAAATTCTGCAGTGGT 651
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 597 GGGTTTAACAAAACCAACTGCTGGCTTTCCAAGAGCTAGGAGTCTAAATTCTACAGTGGT 656
Query 652 GGCTCGCAAAACCAATTCAAATCACCTTCCACCTAAACAGGTTGAGCCTCTTAGTCCTCG 711
||||||||||||||| |||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 657 GGCTCGCAAAACCAAATCAATTTACCTTCCACCTAAAAAGGTTGAGCCTCTTAGTCCTCG 716
Query 712 TACTCAGCAGATTCGTCCAGGAGTCATGAGACAAGCTTCTAAAGCACAAGCAGTAGGAGA 771
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 717 TACTCAACAGATTCGTCCAGGGGTCATGAGACAAGCTTCTAAAGCACAAGCAGTAGGAGA 776
Query 772 AGGGTCAAAAACGAAAGTTGGTGGTGGAGCTAAATATCATGGTACCAACGAGATATGCCG 831
|||||||||| | |||||||| | ||||||||||||||||| | ||||||||||||||||
Sbjct 777 AGGGTCAAAATCAAAAGTTGGCGATGGAGCTAAATATCATGATTCCAACGAGATATGCCG 836
Query 832 ATCAATCTTATCAGAGAAATTGTTGCAATTACTTCCATATCGACCAGCTTTGCACCCCAT 891
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATCAATTTTATCAGAGAAATTGTTGCAATTACTTCCATATCGACCAGCTTTGCACCCCAT 896
Query 892 CTGGAAGGGACGCATTGTGGATTCTGCTACACCATCTGAGTTTAATGGCGAGTTCTTAGC 951
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TTGGAAGGGACGCATAGTGGATTCTGCTACACCATCTGAGTTTAATGGCGAGTTCTTAGC 956
Query 952 TCAACCGGCATCTAAAGTCCGAGGGAAGGCTTATGTACTTTCAAAGGCGGTTCCTGTCTT 1011
|||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||
Sbjct 957 TCAACCGGCATCTAAAGTCCGAGGGAAGGCTTATATACTTTCAAAAGCTATTCCTGTCTT 1016
Query 1012 ACTCAAGGTCAAATTGGTTCCTATAGGTAATCTTCTGAGTGATTTGTTTATGAACAGAAA 1071
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1017 ACTCAAGGTCAAATTGGTTCCTATAGGCAATCTTCTGAGTGGTTTGTTTATGAACAGAAA 1076
Query 1072 ACCAGGGCTTTCAGATGTCGAGATGTACATTTTCCCATATGAAAAGAACACAAAAAGGTT 1131
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1077 ACCAGGGCTTTCAGATGTCGAGATGTACATTTTCCCAGATGACAAGAACACAAAAAGGTT 1136
Query 1132 TACGGAGGAACGTGATCATCTCTTTGAGGCCATGAGGACTCGCAATGCCATGATCAAATT 1191
||| | ||||||||||||| |||||||||||||||||| ||||||||||||||| |||||
Sbjct 1137 TACAGCGGAACGTGATCATATCTTTGAGGCCATGAGGATTCGCAATGCCATGATGAAATT 1196
Query 1192 TAATATCAATGGCACACCATTGTTGATATTCTCTTCAAAACTATTGGACAAGTCCTCCCA 1251
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1197 TAACATCAATGGCACACCATTGTTGATATTCTCTTCAAAACTACTGGACAAGTCCTCCCA 1256
Query 1252 GATTATCATCAAGATGCAGAAGAAAACAAATAACTTCCTTTGGGGGATTTTTCTCCTTAC 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1257 GATTATCATCAAGATGCAGAAGAAAACAAATAACTTCCTTTGGGGGATTTTTCTCCTGAC 1316
Query 1312 AAAAAAGTCTTTAGCACTTCTTCCAGGAACTTCCAATCAAACTCCCCAACATTTTGATGA 1371
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1317 GAAAAAGTCTTTAGCACTTCTTCCAGGAACATCGAATCAAACTCCCCAACATTTTGATGA 1376
Query 1372 TGGAGATGTAGTTGACAATGACACTGAAACCCTTCATCA 1410
|||| ||||||||||||||||||||||| || ||| |||
Sbjct 1377 TGGATATGTAGTTGACAATGACACTGAA-CCTTTCTTCA 1414
Score = 300 bits (162), Expect = 3e-80
Identities = 215/239 (90%), Gaps = 9/239 (4%)
Strand=Plus/Plus
Query 1473 ACCACCGGAATTCTGGTAAAG-AATTGTAGAGACATTACAGG-GAGAGGGACTGATC-AA 1529
|||||||||||| ||| ||| ||||| |||||||||| || ||||||| ||||| ||
Sbjct 1421 ACCACCGGAATTGTGG-GAAGCAATTGCAGAGACATTA-TGGTCAGAGGGATTGATCAAA 1478
Query 1530 TGTGGAGTGGCTGATGTTGTCTCTAGGAAATTGGTATATAGATTAGTGCTACTAATCTCT 1589
|| ||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1479 TGGGGAGTGGCTTATGTTGTCTCAAGGAAATTGCTATATAGATTAGTGCTACTAATCTCT 1538
Query 1590 GATTGT---GTTCTATATTGGTGTAAGAAGTAAAAAATTTAGCCCTTGTGTTACTTTTTT 1646
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1539 GATTGTACTGTTCTATATTGGTGTAAGAAGTAAAAAATTTAACCCTTGTGTTACTTTTT- 1597
Query 1647 ACCTCCTGATTACTTGTAGATTTTTATGGGGTACTGAATAAAGGTTATATTGTTTATAT 1705
||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 1598 ACCTCCTGATTGCTTGTAGATTTTTATGGGGTATTAAATAAAGGTTAGATTGTTTATAT 1656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84286715055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5