BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496269
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61170.1 | Symbols: | Ribosomal protein S19e family protein... 957 0.0
> AT5G61170.1 | Symbols: | Ribosomal protein S19e family protein
| chr5:24611086-24612427 FORWARD LENGTH=729
Length=729
Score = 957 bits (518), Expect = 0.0
Identities = 591/624 (95%), Gaps = 14/624 (2%)
Strand=Plus/Plus
Query 1 CCCGTCTCCAAGTATCGCCGACGCCGCAGCACCAAAGGAGGAGAAGAAGGATCAAAGGCG 60
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 6 CCCGTCTTCAAGTATCGCCGACGCCGCAGCA-CAAAGGAGGAGAAGAAGGATCAAAGGCG 64
Query 61 CGACACAACAATGGCGACTGGTAAAACAGTGAAGGATGTCTCTCCACACGAGTTCGTCAA 120
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 65 CG--ACAACAATGGCGACAGGTAAAACAGTGAAGGATGTCTCTCCACACGAGTTCGTCAA 122
Query 121 GGCTTACGCTGCCCATCTCAAGCGCTCCGGCAAGATTGAGCTGCCTCTGTGGACAGACAT 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 123 GGCTTACGCTGCCCATCTCAAGCGTTCCGGCAAGATTGAGCTGCCTCTGTGGACAGACAT 182
Query 181 CGTCAAGACTGGTAAACTTAAGGAGCTTGCTCCATATGACCCTGACTGGTACTACATCAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CGTCAAGACTGGTAAACTTAAGGAGCTTGCTCCATATGACCCTGACTGGTACTACATCAG 242
Query 241 AGCTGCTTCCATGGCTAGGAAAGTCTACCTGAGGGGTGGTCTTGGAGTTGGTGCTTTCCG 300
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 243 AGCTGCTTCCATGGCTAGGAAGGTTTACCTGAGGGGTGGTCTTGGAGTTGGTGCCTTCCG 302
Query 301 TAGGATCTATGGAGGAAGCAAGAGGAACGGAAGCCGTCCTCCTCATTTCTGCAAGAGCAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TAGGATCTATGGAGGAAGCAAGAGGAACGGAAGCCGTCCTCCTCATTTCTGCAAGAGCAG 362
Query 361 CGGTGGTGTTGCTCGTCACATTCTTCAGCAACTCCAGACCATGAACATTGTTGACCTCGA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TGGTGGTGTTGCTCGTCACATTCTTCAGCAACTCCAGACCATGAACATTGTTGACCTCGA 422
Query 421 CACCAAGGGGGGAAGGAAGATCACGTCAAGTGGTCAGAGAGATCTTGACCAAGTCGCTGG 480
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 423 CACCAAGGGTGGAAGGAAGATCACATCAAGTGGTCAGAGAGATCTCGACCAAGTCGCTGG 482
Query 481 AAGGATCGCAGCTGCCGTCTAAATCAAATCATAACGTCAGATGGTCAAGTCTAAGTTTAA 540
||||||||||||||| |||||||||| | | | | | ||||||||| || ||||||||
Sbjct 483 AAGGATCGCAGCTGCTGTCTAAATCATAGCG-A-C-T--GATGGTCAACTCCAAGTTTAA 537
Query 541 GGTTTATGTTGGAGATTTAGATA-TGGAATGAGTTGCATTTGA--AAA-CCAATAGTAGA 596
|||||||||| ||||||||| || ||||||||||||||||||| ||| ||| |||||||
Sbjct 538 GGTTTATGTTTGAGATTTAG-TAATGGAATGAGTTGCATTTGATGAAAACCAGTAGTAGA 596
Query 597 ATTCCCTCTCATTTTTATCTTTGA 620
|||||||||||||||| | |||||
Sbjct 597 ATTCCCTCTCATTTTTGT-TTTGA 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5