BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496270
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61180.1 | Symbols: | Putative endonuclease or glycosyl hyd... 508 2e-143
> AT5G61180.1 | Symbols: | Putative endonuclease or glycosyl hydrolase
| chr5:24612867-24614174 FORWARD LENGTH=1041
Length=1041
Score = 508 bits (275), Expect = 2e-143
Identities = 455/536 (85%), Gaps = 35/536 (7%)
Strand=Plus/Plus
Query 12 GCAACTGCTAAATCATTGGCGTTGCTGGATACAGAGAACCGCGAGGTTCTCAAAAGTTGG 71
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 25 GCAACTGCTAAATCATTGGCGTTGCTGGACACAGAGAACCGCGAGGTTCTCAATAGTTTT 84
Query 72 GATGCCATCTTTACTCATGGCAACACTGATCCAGTCGCTCCTC-T--TGAGCCACTGGCC 128
|||||||| ||||||||||||||||| |||| ||||||||||| | |||||| |||| |
Sbjct 85 GATGCCATTTTTACTCATGGCAACACCGATCAAGTCGCTCCTCTTGATGAGCCTCTGGTC 144
Query 129 TTCAACGGCTTTGGACT--GTCACGTCTCGGCCAAAGACCA-CCATCAACCAAAAACAGA 185
|| ||| |||||||||| ||||| ||||||||||||| || ||||||||||||||| ||
Sbjct 145 TTTAACCGCTTTGGACTCAGTCACATCTCGGCCAAAGA-CACCCATCAACCAAAAACGGA 203
Query 186 AGAAGACGAATCAGCAAAGGGGGATTTCGCTGGTGCAAAAACGTCTGTTTGGTGGGACAT 245
| ||| |||||||| |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 204 CGTAGATGAATCAGCGAAGGCGGATTTCGCTGGTGCAAAAACGTCAGTTTGGTGGGACAT 263
Query 246 TGAGAACTGCGAGGTTCCAAAGGGTTGTGACCCCCATGGTGTTGTTCAGAGCATTAGATC 305
||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||
Sbjct 264 TGAGAACTGCGAGGTTCCAAAGGGTTGTGACCCTCATGGGGTTGCTCAGAGCATTAGATC 323
Query 306 GGTGCTGTTGAAAAGGAACTACTGTGGTCCGCTCACTATTTATGCCTATGGTGACACAAC 365
|| |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 324 AGTTCTGTCGAAAAGTAACTTCTGTGGTCCGCTCACTATTTATGCCTATGGTGACACAAA 383
Query 366 TC---TCTCTTCCACCGG-CGT-AT-CTCTCAAT-C-ACCGGTTTAATCTTT-ATT---G 413
|| || ||||| | | | | ||||| | | ||||| || ||| | | | |
Sbjct 384 TCAAATCCCTTCCTCTGTACAACAAGCTCTCTCTTCCACCGGCGTA-TCTCTCAATCACG 442
Query 414 TG--TG--GTCTCTAATGGCTCA-TT---CTCTATGTTCTTGATAAATGATGATGGTGAG 465
| || ||||||||||||| | || ||||||||||||||| |||| | ||||
Sbjct 443 TCCCTGCCGTCTCTAATGGCTTAATTATTCTCTATGTTCTTGAT----GATG--G-TGAG 495
Query 466 AATTTAACAGGAGTAAAAGACGGGAGTGACAAGAAGCTCCTTGTAGACATCGTGTT 521
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 496 CATTTAACAGGAGTAAAAGACGGGAGTGACAAGAAGCTCCTTGTAGATATCATGTT 551
Score = 329 bits (178), Expect = 2e-89
Identities = 211/227 (93%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 550 GATTCTGGCTCTGAGGTTTTAAGACATTTGGGTCCTAAACAAGCTCAAGGGACCAAGAGG 609
||||||| || |||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GATTCTGCCTATGAGGTATCAAGACATTTGGGTCCTAAACAAGCTCAAGGGACCAAGAGG 846
Query 610 TGCCGGAGTTTCTGTGAATTATGCAATGTTTTTTGCTCAAACCATGATTTAACCGCTCAC 669
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 847 GGCCGGAGTTTTTGTGAATTATGCAATGTTTCTTGCTCAAACCATGATTTAACCGCTCAC 906
Query 670 CTCTCTGGTAAAAGGCACAGAACTAACCCCGTGGACGCCCTCTTGTCAGTAATTCAATCG 729
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 907 CTCTCTGGTAGAAGGCACAGAGCTAACCCCGTGGACGCCCTCTTGTCAGTAATTCAACCG 966
Query 730 AACAAAAGTTTGCATGGTGCCGAGATTGCCGTAT-CAGTTTCCGCAG 775
||| ||||| |||||||||||||| ||||||| | | ||||||||||
Sbjct 967 AACCAAAGTATGCATGGTGCCGAGTTTGCCGTTTGC-GTTTCCGCAG 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5