BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496275 Length=522 Score E Sequences producing significant alignments: (Bits) Value AT5G61220.1 | Symbols: | LYR family of Fe/S cluster biogenesis... 586 7e-167 > AT5G61220.1 | Symbols: | LYR family of Fe/S cluster biogenesis protein | chr5:24625573-24626923 REVERSE LENGTH=640 Length=640 Score = 586 bits (317), Expect = 7e-167 Identities = 434/486 (89%), Gaps = 25/486 (5%) Strand=Plus/Plus Query 1 CAGGCTTTGTATAATAAAGGGTTAGTTTCCAATCTTGCAATGGTATCTAGAAGTGAAGTT 60 ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 76 CAGGCTTTGTATAATTAAGGGTTAGTTTCCAATCTTGCAATGGTGTCTAGTAGTGAAGTT 135 Query 61 CTCAGCCTCTGTCGTGCCCTGCTTCGAGCCGGACGTCAATACCCTGATTACAACATTAGG 120 || ||||| ||||||||| |||||||||| |||||||||| ||||||||||||||||||| Sbjct 136 CTTAGCCTATGTCGTGCCTTGCTTCGAGCGGGACGTCAATTCCCTGATTACAACATTAGG 195 Query 121 GAGTACACTAAGCGAAGGACCTTGGATGGCTTCCGCATGAACAAGAATCTCACTGACCCA 180 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 196 GAGTACAGTAAGCGAAGGACCTTGGATGGCTTCCGCATGAACAAGAATCTCACTGACCCA 255 Query 181 TCGAAGGTGAATGAGGCTTATGCTGAAGCTAAAGCACAGCTTGTGGTTGCTGAGAGAGTG 240 |||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||||| Sbjct 256 TCGAAGGTGACTGAGGCTTATGCTGAAGCTAAAAAACAGCTTTTTGTTGCTGAGAGAGTG 315 Query 241 CTCAAGGTCTACTTGGCATATCCTCCCAAGACCAAGAACATCATGGAAGTCAAGCTTCAG 300 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 316 CTCAAGGTTTACTTGGCATATCCTCCCAAGACCAAGAACATCATGGAAGTCAAGCTTCAG 375 Query 301 TAGATACATTAT-CAAGTGAAGAAGTGGACACTGTGAGAGAAAT-TAC-TTGGATTAG-A 356 |||||||||||| |||||||||||| ||||| |||| || | || | | ||||||| | | Sbjct 376 TAGATACATTATACAAGTGAAGAAGAGGACATTGTG-GA-ATATATCCCTTGGATT-GTA 432 Query 357 GCAGAA-ATAGACTAAAGGAAATGAAGAGTTCCTGG----------------AATAATCT 399 || || | |||||||||| |||||||||||||||| |||||||| Sbjct 433 GCTGAGGA-AGACTAAAGGGAATGAAGAGTTCCTGGTTTTTTTGTTCTTTTGAATAATCT 491 Query 400 CACACGATTATGCACTTGTTGGATAACAAATGTTCCAACTTGTCTGGAGTTTCTGTATTC 459 |||| |||| |||| |||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 492 CACATGATTGTGCAGTTGTTGCATAACATATGTTCCAACTTGTCTGGAGTTTCTGTATTC 551 Query 460 TTATGT 465 |||||| Sbjct 552 TTATGT 557 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24966371059 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5