BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496275
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61220.1 | Symbols: | LYR family of Fe/S cluster biogenesis... 586 7e-167
> AT5G61220.1 | Symbols: | LYR family of Fe/S cluster biogenesis
protein | chr5:24625573-24626923 REVERSE LENGTH=640
Length=640
Score = 586 bits (317), Expect = 7e-167
Identities = 434/486 (89%), Gaps = 25/486 (5%)
Strand=Plus/Plus
Query 1 CAGGCTTTGTATAATAAAGGGTTAGTTTCCAATCTTGCAATGGTATCTAGAAGTGAAGTT 60
||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 76 CAGGCTTTGTATAATTAAGGGTTAGTTTCCAATCTTGCAATGGTGTCTAGTAGTGAAGTT 135
Query 61 CTCAGCCTCTGTCGTGCCCTGCTTCGAGCCGGACGTCAATACCCTGATTACAACATTAGG 120
|| ||||| ||||||||| |||||||||| |||||||||| |||||||||||||||||||
Sbjct 136 CTTAGCCTATGTCGTGCCTTGCTTCGAGCGGGACGTCAATTCCCTGATTACAACATTAGG 195
Query 121 GAGTACACTAAGCGAAGGACCTTGGATGGCTTCCGCATGAACAAGAATCTCACTGACCCA 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GAGTACAGTAAGCGAAGGACCTTGGATGGCTTCCGCATGAACAAGAATCTCACTGACCCA 255
Query 181 TCGAAGGTGAATGAGGCTTATGCTGAAGCTAAAGCACAGCTTGTGGTTGCTGAGAGAGTG 240
|||||||||| |||||||||||||||||||||| ||||||| | |||||||||||||||
Sbjct 256 TCGAAGGTGACTGAGGCTTATGCTGAAGCTAAAAAACAGCTTTTTGTTGCTGAGAGAGTG 315
Query 241 CTCAAGGTCTACTTGGCATATCCTCCCAAGACCAAGAACATCATGGAAGTCAAGCTTCAG 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 CTCAAGGTTTACTTGGCATATCCTCCCAAGACCAAGAACATCATGGAAGTCAAGCTTCAG 375
Query 301 TAGATACATTAT-CAAGTGAAGAAGTGGACACTGTGAGAGAAAT-TAC-TTGGATTAG-A 356
|||||||||||| |||||||||||| ||||| |||| || | || | | ||||||| | |
Sbjct 376 TAGATACATTATACAAGTGAAGAAGAGGACATTGTG-GA-ATATATCCCTTGGATT-GTA 432
Query 357 GCAGAA-ATAGACTAAAGGAAATGAAGAGTTCCTGG----------------AATAATCT 399
|| || | |||||||||| |||||||||||||||| ||||||||
Sbjct 433 GCTGAGGA-AGACTAAAGGGAATGAAGAGTTCCTGGTTTTTTTGTTCTTTTGAATAATCT 491
Query 400 CACACGATTATGCACTTGTTGGATAACAAATGTTCCAACTTGTCTGGAGTTTCTGTATTC 459
|||| |||| |||| |||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 492 CACATGATTGTGCAGTTGTTGCATAACATATGTTCCAACTTGTCTGGAGTTTCTGTATTC 551
Query 460 TTATGT 465
||||||
Sbjct 552 TTATGT 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24966371059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5