BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496276
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61228.1 | Symbols: CPuORF15 | conserved peptide upstream op... 920 0.0
AT5G61230.1 | Symbols: | Ankyrin repeat family protein | chr5:... 920 0.0
> AT5G61228.1 | Symbols: CPuORF15 | conserved peptide upstream
open reading frame 15 | chr5:24627187-24628968 FORWARD LENGTH=1335
Length=1335
Score = 920 bits (498), Expect = 0.0
Identities = 589/633 (93%), Gaps = 5/633 (1%)
Strand=Plus/Plus
Query 480 TGTTTGATTAGTTTCTACCCGAGTCTCTTAGTCCTACACAGATCCCGATCCTACTTCGTC 539
|||||| ||||| |||||||||||||| ||||||||||||||||| ||||||| || ||
Sbjct 526 TGTTTGGTTAGTATCTACCCGAGTCTCGTAGTCCTACACAGATCCGGATCCTAGTT--TC 583
Query 540 AAAGCTAGTTCTTGTTTAGCTGAAGCTCAGACCCAGAATGCTCCAAGAACCCCCGGTTGC 599
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 584 GAAGCTAGTTCTTGTTTAGCTGAAGCTCAGACCCAAAATGCTCCAAGAACCGTCGGCTGC 643
Query 600 ATTCTCGCTCCGGCGTAACTCATTTAGACGCCGATCCCCCAGATCAAATGTTGATGACAG 659
|||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 644 ATTCTCCCTCCGGCGTAACTCATTCAGACGCCGATCTCCCAGATCAAATGTCGATGACAG 703
Query 660 AGGCTGGTCTCCACTCCACATCAAAGCCCGAAAAGGCGATCTGAAATCCGTTAAACAGCT 719
||||||| ||| ||||| ||||||||| ||||||||||||||||||| || || |||||
Sbjct 704 AGGCTGGAATCCGCTCCATATCAAAGCCAGAAAAGGCGATCTGAAATCTGTCAAGCAGCT 763
Query 720 TCTCGACCAAGGAATGGATGTGAATGCTCTAGCATGGGGACCCAAATCAAAAGGAGTGAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TCTCGACCAAGGAATGGATGTGAATGCTCTAGCATGGGGACCCAAATCAAAAGGAGTGAG 823
Query 780 TGCGCTTCACCTTGCAGCAGAGGGAGGTCACATAGAAGTCATGGATTTACTCCTGGAACG 839
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 824 TGCACTTCACCTTGCAGCAGAGGGAGGTCACATTGAAGTCATGGATTTACTCCTAGAACG 883
Query 840 TGGGGCCAACATCGATGCCAGAACATGGGGCTCGTGCGGGTGGACCCCTCTCCACGCTGC 899
|||||||||||| ||||| | |||||||||||| ||||||||||| ||||||||||||||
Sbjct 884 TGGGGCCAACATTGATGCTAAAACATGGGGCTCATGCGGGTGGACTCCTCTCCACGCTGC 943
Query 900 AGCCAAAGAGCGAAAGCGAGAAGCGGTGAAGTTTCTGGTGGAGAACGGCGCATTCTTGGC 959
|||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 944 AGCCAAAGAGCGGAAGAGAGAAGCAGTGAAGTTTCTGGTGGAGAACGGCGCATTCTTGGC 1003
Query 960 AGATGATATAACTGATACAAGGTTTAATCCGCCGGTGCATTACTGTCACGGACTTGAATG 1019
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1004 AGATGATATAACTGATACCAGGTTTAATCCGCCGGTGCATTACTGTCACGGCCTTGAATG 1063
Query 1020 GGCGTACGAGGAAATGAAGAAACTTAACAGTGAGTCTTCTTC---ATCTGGTGGAGATAC 1076
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||
Sbjct 1064 GGCGTACGAGGAAATGAAGAAGCTTAACAGCGAGTCTTCTTCTTCATCTGGTGGAGACAC 1123
Query 1077 ATCTTCCAGTTCTGAGAACTGAACTTCTTCTTG 1109
||||||||||||||| |||||||||||||||||
Sbjct 1124 ATCTTCCAGTTCTGACAACTGAACTTCTTCTTG 1156
Score = 532 bits (288), Expect = 2e-150
Identities = 393/439 (90%), Gaps = 26/439 (6%)
Strand=Plus/Plus
Query 49 TCTCTGGCGAGAAG-AAATATCTTTATCTCTGAGCTTTCTTTCACCATTTCTCTGTCTCT 107
|||||||||||||| |||| | ||||||||||||||| ||||||||||||||| |||||
Sbjct 68 TCTCTGGCGAGAAGTAAAT-T-TTTATCTCTGAGCTTGGTTTCACCATTTCTCTATCTCT 125
Query 108 ATCT-CT--CT-GG-TACGAGCCTATTTGGTAAAATCACACTTCTATAAGGCTGAAATTT 162
|||| || || || |||| | |||||||| ||| |||| ||||||||||||||
Sbjct 126 ATCTCCTCGCTGGGTTACG-G----TTTGGTAAGGTCAGTGTTCTCTAAGGCTGAAATTT 180
Query 163 GGGGTTTTCTCAGTCTCGATGTGGTCGTGCTCCGTTAGGATTCCTCACAATCATTAGGCT 222
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 181 GGGGGTTTCTCAGTCTCGATGTGGTCGTGCTCCGTTAGGATTCTTCACAATCATTAGGGT 240
Query 223 TGTATTTCTCT-CAAAGTGATGCTCATTTTCTCTTCCCTGTCTATGGCTTTATCTGTGAT 281
| ||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TATATTTCT-TACAAACTGATGCTCATTTTCTCTTCCCTGTCTATGGCTTTATCTGTGAT 299
Query 282 CCTTCAAAAGCTTAGTGTCTTCGGCCCTGGTTTGAATCCTTCTTTCCCTTACTGCATCGC 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCTTCAAAAGCTTAGTGTCTTCGGCCCTGGTTTGAATCCTTCTTTCCCTTACTGCATCGC 359
Query 342 CAATCACTC-TGTTGCCTCCCGTTAATTGAGTTGCTCTCTTTCAACTGAATTACATAAGT 400
||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 360 CAATCACTCCT-TTGCCTCCCGTTAATTGAGTTGCTCTCTTTCAACTTAATTACATTAGT 418
Query 401 CTGCTTCCTTTGCTGTCTAGTCTGGATATTGTTTCAAATCCTTAGCCAGAAGTAGTACCT 460
|||||||||||||||||||||||||||| |||| |||||| | || |||| | | |
Sbjct 419 CTGCTTCCTTTGCTGTCTAGTCTGGATAGTGTTGCAAATC---A---AGTAGTA-T-C-T 469
Query 461 TCTCTAGACATTCTTGGCT 479
||| |||||||||||||||
Sbjct 470 TCTTTAGACATTCTTGGCT 488
Score = 102 bits (55), Expect = 7e-21
Identities = 94/111 (85%), Gaps = 10/111 (9%)
Strand=Plus/Plus
Query 1110 ACTTATCAGAAAC-ATTATCTTTGGTTTTTGATCTTAT-GGCTATGTGAAACTTTGAAAC 1167
||||||||| ||| ||||| ||||| ||||||||||| ||||||||||||| |||||||
Sbjct 1199 ACTTATCAG-AACTATTATGGTTGGTGTTTGATCTTATGGGCTATGTGAAACATTGAAAC 1257
Query 1168 AGCTGGTTTGTCATATATTAATGTAATCTTCAGTGTGTTATTTTGCAACTC 1218
|| | | ||| ||| |||||||||||||||||||||||||||||||
Sbjct 1258 TGC--G---G--ATACATTCATGTAATCTTCAGTGTGTTATTTTGCAACTC 1301
> AT5G61230.1 | Symbols: | Ankyrin repeat family protein | chr5:24627187-24628968
FORWARD LENGTH=1335
Length=1335
Score = 920 bits (498), Expect = 0.0
Identities = 589/633 (93%), Gaps = 5/633 (1%)
Strand=Plus/Plus
Query 480 TGTTTGATTAGTTTCTACCCGAGTCTCTTAGTCCTACACAGATCCCGATCCTACTTCGTC 539
|||||| ||||| |||||||||||||| ||||||||||||||||| ||||||| || ||
Sbjct 526 TGTTTGGTTAGTATCTACCCGAGTCTCGTAGTCCTACACAGATCCGGATCCTAGTT--TC 583
Query 540 AAAGCTAGTTCTTGTTTAGCTGAAGCTCAGACCCAGAATGCTCCAAGAACCCCCGGTTGC 599
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 584 GAAGCTAGTTCTTGTTTAGCTGAAGCTCAGACCCAAAATGCTCCAAGAACCGTCGGCTGC 643
Query 600 ATTCTCGCTCCGGCGTAACTCATTTAGACGCCGATCCCCCAGATCAAATGTTGATGACAG 659
|||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 644 ATTCTCCCTCCGGCGTAACTCATTCAGACGCCGATCTCCCAGATCAAATGTCGATGACAG 703
Query 660 AGGCTGGTCTCCACTCCACATCAAAGCCCGAAAAGGCGATCTGAAATCCGTTAAACAGCT 719
||||||| ||| ||||| ||||||||| ||||||||||||||||||| || || |||||
Sbjct 704 AGGCTGGAATCCGCTCCATATCAAAGCCAGAAAAGGCGATCTGAAATCTGTCAAGCAGCT 763
Query 720 TCTCGACCAAGGAATGGATGTGAATGCTCTAGCATGGGGACCCAAATCAAAAGGAGTGAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 TCTCGACCAAGGAATGGATGTGAATGCTCTAGCATGGGGACCCAAATCAAAAGGAGTGAG 823
Query 780 TGCGCTTCACCTTGCAGCAGAGGGAGGTCACATAGAAGTCATGGATTTACTCCTGGAACG 839
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 824 TGCACTTCACCTTGCAGCAGAGGGAGGTCACATTGAAGTCATGGATTTACTCCTAGAACG 883
Query 840 TGGGGCCAACATCGATGCCAGAACATGGGGCTCGTGCGGGTGGACCCCTCTCCACGCTGC 899
|||||||||||| ||||| | |||||||||||| ||||||||||| ||||||||||||||
Sbjct 884 TGGGGCCAACATTGATGCTAAAACATGGGGCTCATGCGGGTGGACTCCTCTCCACGCTGC 943
Query 900 AGCCAAAGAGCGAAAGCGAGAAGCGGTGAAGTTTCTGGTGGAGAACGGCGCATTCTTGGC 959
|||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 944 AGCCAAAGAGCGGAAGAGAGAAGCAGTGAAGTTTCTGGTGGAGAACGGCGCATTCTTGGC 1003
Query 960 AGATGATATAACTGATACAAGGTTTAATCCGCCGGTGCATTACTGTCACGGACTTGAATG 1019
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1004 AGATGATATAACTGATACCAGGTTTAATCCGCCGGTGCATTACTGTCACGGCCTTGAATG 1063
Query 1020 GGCGTACGAGGAAATGAAGAAACTTAACAGTGAGTCTTCTTC---ATCTGGTGGAGATAC 1076
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||
Sbjct 1064 GGCGTACGAGGAAATGAAGAAGCTTAACAGCGAGTCTTCTTCTTCATCTGGTGGAGACAC 1123
Query 1077 ATCTTCCAGTTCTGAGAACTGAACTTCTTCTTG 1109
||||||||||||||| |||||||||||||||||
Sbjct 1124 ATCTTCCAGTTCTGACAACTGAACTTCTTCTTG 1156
Score = 532 bits (288), Expect = 2e-150
Identities = 393/439 (90%), Gaps = 26/439 (6%)
Strand=Plus/Plus
Query 49 TCTCTGGCGAGAAG-AAATATCTTTATCTCTGAGCTTTCTTTCACCATTTCTCTGTCTCT 107
|||||||||||||| |||| | ||||||||||||||| ||||||||||||||| |||||
Sbjct 68 TCTCTGGCGAGAAGTAAAT-T-TTTATCTCTGAGCTTGGTTTCACCATTTCTCTATCTCT 125
Query 108 ATCT-CT--CT-GG-TACGAGCCTATTTGGTAAAATCACACTTCTATAAGGCTGAAATTT 162
|||| || || || |||| | |||||||| ||| |||| ||||||||||||||
Sbjct 126 ATCTCCTCGCTGGGTTACG-G----TTTGGTAAGGTCAGTGTTCTCTAAGGCTGAAATTT 180
Query 163 GGGGTTTTCTCAGTCTCGATGTGGTCGTGCTCCGTTAGGATTCCTCACAATCATTAGGCT 222
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 181 GGGGGTTTCTCAGTCTCGATGTGGTCGTGCTCCGTTAGGATTCTTCACAATCATTAGGGT 240
Query 223 TGTATTTCTCT-CAAAGTGATGCTCATTTTCTCTTCCCTGTCTATGGCTTTATCTGTGAT 281
| ||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TATATTTCT-TACAAACTGATGCTCATTTTCTCTTCCCTGTCTATGGCTTTATCTGTGAT 299
Query 282 CCTTCAAAAGCTTAGTGTCTTCGGCCCTGGTTTGAATCCTTCTTTCCCTTACTGCATCGC 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CCTTCAAAAGCTTAGTGTCTTCGGCCCTGGTTTGAATCCTTCTTTCCCTTACTGCATCGC 359
Query 342 CAATCACTC-TGTTGCCTCCCGTTAATTGAGTTGCTCTCTTTCAACTGAATTACATAAGT 400
||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 360 CAATCACTCCT-TTGCCTCCCGTTAATTGAGTTGCTCTCTTTCAACTTAATTACATTAGT 418
Query 401 CTGCTTCCTTTGCTGTCTAGTCTGGATATTGTTTCAAATCCTTAGCCAGAAGTAGTACCT 460
|||||||||||||||||||||||||||| |||| |||||| | || |||| | | |
Sbjct 419 CTGCTTCCTTTGCTGTCTAGTCTGGATAGTGTTGCAAATC---A---AGTAGTA-T-C-T 469
Query 461 TCTCTAGACATTCTTGGCT 479
||| |||||||||||||||
Sbjct 470 TCTTTAGACATTCTTGGCT 488
Score = 102 bits (55), Expect = 7e-21
Identities = 94/111 (85%), Gaps = 10/111 (9%)
Strand=Plus/Plus
Query 1110 ACTTATCAGAAAC-ATTATCTTTGGTTTTTGATCTTAT-GGCTATGTGAAACTTTGAAAC 1167
||||||||| ||| ||||| ||||| ||||||||||| ||||||||||||| |||||||
Sbjct 1199 ACTTATCAG-AACTATTATGGTTGGTGTTTGATCTTATGGGCTATGTGAAACATTGAAAC 1257
Query 1168 AGCTGGTTTGTCATATATTAATGTAATCTTCAGTGTGTTATTTTGCAACTC 1218
|| | | ||| ||| |||||||||||||||||||||||||||||||
Sbjct 1258 TGC--G---G--ATACATTCATGTAATCTTCAGTGTGTTATTTTGCAACTC 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5