BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496278
Length=1406
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61240.2 | Symbols: | Leucine-rich repeat (LRR) family prot... 1400 0.0
AT5G61250.2 | Symbols: AtGUS1, GUS1 | glucuronidase 1 | chr5:24... 108 2e-22
> AT5G61240.2 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr5:24629256-24632202 FORWARD LENGTH=1493
Length=1493
Score = 1400 bits (758), Expect = 0.0
Identities = 826/857 (96%), Gaps = 12/857 (1%)
Strand=Plus/Plus
Query 547 TACTAAACCTGAGGTGGAATAAGCTACAAGATGTGATTCCTCCCGAGATTGGGGAGCTGA 606
||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 643 TAC-AAACCTGAGGTGGAATAAACTACAAGATGTGATCCCTCCCGAGATTGGGGAGCTGA 701
Query 607 AGAGACTAACCCATTTGTACTTGAGCTTCAATAGCTTCAAAGGG-GAAATTCCCAAGGAA 665
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 702 AGAGACTAACCCATTTGTACTTGAGCTTCAATAGCTTC-AAGGGAGAAATTCCCAAGGAA 760
Query 666 CTGGCTGCTCTTCCCGAGCTTCGGTATCTATATCTTCAAGAAAACCGTCTCATTGGTAGA 725
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 761 CTAGCTGCTCTTCCCGAGCTTCGGTATCTATACCTTCAAGAAAACCGTCTCATTGGTAGA 820
Query 726 ATTCCTGCAGAACTGGGGA-TGCTGCAAAACCTTCGCCACCTAGATGTTGGTAACAACCA 784
|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 821 ATTCCTGCCGAACTGGGGACT-CTGCAAAACCTTCGCCACCTAGATGTTGGTAACAACCA 879
Query 785 TTTGGTGGGAACTATACGGGAGCTCATCCGTTTTGATGGAAGTTTCCCAGCTCTTCGCAA 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 TTTGGTGGGAACTATACGGGAGCTCATCCGTTTTGATGGAAGTTTCCCAGCTCTTCGCAA 939
Query 845 CTTGTACTTGAATAATAACTATTTGAGTGGAGGGATCCCTGCTCAGCTGTCAAATCTTAC 904
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 940 CTTGTACTTGAATAATAACTATTTGAGTGGAGGGATTCCTGCTCAGCTGTCAAATCTTAC 999
Query 905 AAACTTAGAGATTGTTTACCTGTCTTACAACAAATTTATAGGAAACATTCCTTTTGCCAT 964
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1000 AAACTTAGAGATTGTTTACCTGTCTTACAACAAATTTATTGGAAACATTCCTTTTGCCAT 1059
Query 965 TGCTCATATTCCTAAACTGACATACCTGTACCTTGATCACAACCAATTTACCGGGAGAAT 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 TGCTCATATTCCTAAACTGACATACCTGTACCTTGATCACAACCAATTTACCGGGAGAAT 1119
Query 1025 CCCAGACGCATTCTACAAGCACCCATTCCTCAAAGAAATGTACATTGAAGGCAACATGTT 1084
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1120 CCCAGACGCATTCTACAAGCATCCATTCCTCAAAGAAATGTACATTGAAGGCAACATGTT 1179
Query 1085 CAAGTCAGGCGTGAACCCTATTGGTACCCACAAAGTTCTAGAAGTTTCTGATGCCGATTT 1144
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1180 CAAGTCAGGCGTGAACCCAATTGGTACCCACAAAGTTTTAGAAGTTTCTGATGCCGATTT 1239
Query 1145 TGCTGTGTGACCGGATAGAAGATTCTA-G-AGGTTCTCGAGAAAACGTCTCAGAACTACC 1202
||| ||||||||||||||||||||| | | |||||||||||||||||||||||||| |||
Sbjct 1240 TGCCGTGTGACCGGATAGAAGATTCCAGGAAGGTTCTCGAGAAAACGTCTCAGAACCACC 1299
Query 1203 TAGAAATGGTTCCACTTTAG-TC-CTTCACTATTATTATTTTTTGTATGGTCTATCGATT 1260
|||| || |||||||||||| | ||||||||||||||||||||||||||||| | ||||
Sbjct 1300 TAGAGATTGTTCCACTTTAGCCCTCTTCACTATTATTATTTTTTGTATGGTCTGTGGATT 1359
Query 1261 TGCAAATGaaaaaaaaaaGCATAAGACTACAAGTTTTTATCTTCATATTGTATAGTTAGA 1320
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 TGCAAATG---AAAGAAAGCATAAGACTACAAGTTTTTATCTTCATATTGTATAGTTAGA 1416
Query 1321 CACATTCCACTAATCTATATTTCTCCTTAATCAAATGATTATATATATTTAGATTGGAAT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 CACATTCCACTAATCTATATTTCTCCTTAATCAAATGATTATATATATTTAGATTGGAAT 1476
Query 1381 AAACCACTTCCAGTATA 1397
|||||||||||||||||
Sbjct 1477 AAACCACTTCCAGTATA 1493
Score = 863 bits (467), Expect = 0.0
Identities = 529/558 (95%), Gaps = 8/558 (1%)
Strand=Plus/Plus
Query 1 CAAGAAGAAAACATCCGGGTCGTTACCAAACCCGTCGGTGAGA-AGCGGGTTTG-GATAC 58
||| |||||||||||||| || |||||| |||||||||||||| |||||||||| ||||
Sbjct 49 CAAAAAGAAAACATCCGGATCATTACCAGACCCGTCGGTGAGATAGCGGGTTTGAAATAC 108
Query 59 AC-GTATTCGGTTTACGAATCTCAGGA--A-GCAGAGAAAATAAAAATGACTTTTTTAAT 114
|| |||||||||||||||||||||||| | | ||||||||||||||||| |||||||||
Sbjct 109 ACGGTATTCGGTTTACGAATCTCAGGAGGAGGAAGAGAAAATAAAAATGAGTTTTTTAAT 168
Query 115 TTCGCTCACCTCTTAGATCCCGTTTGTTCTC-TT-TCACTTTGGCTGTTCAAGCAAAAAC 172
||||||| | ||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 169 TTCGCTCTCTTCTTAGATCCCGTTTGTTCTCTTTCTCACTTTGGCTGTTTAAGCAAAAAC 228
Query 173 CATGGCTTCTCGCTGTGAGCTACTTCTGATCTGCATCTTCTCTATCTTGTTTTCTTTTGC 232
|||||||||||||||||||||||||||||||||| |||||||| |||| || |||||||
Sbjct 229 CATGGCTTCTCGCTGTGAGCTACTTCTGATCTGCGTCTTCTCTCTCTTAATTGCTTTTGC 288
Query 233 TCACTCCAAGACATTGAAGCGAGATGTGAAAGCTTTGAATGAAATTAAAGCCTCTTTGGG 292
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 289 TCACTCCAAGACATTGAAGCGAGATGTGAAAGCTTTGAATGAAATCAAAGCCTCTTTGGG 348
Query 293 ATGGAGAGTGGTGTATTCATGGGTTGGTGACGATCCTTGTGGAGATGGAGACCTTCCACC 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 ATGGAGAGTGGTGTATTCATGGGTTGGTGACGATCCTTGTGGAGATGGAGACCTTCCACC 408
Query 353 TTGGTCTGGTGTCACCTGTTCTACACAAGGAGACTATAGAGTTGTCACTGAATTAGAAGT 412
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 409 TTGGTCTGGTGTCACGTGTTCTACACAAGGAGACTATAGAGTTGTCACAGAATTAGAAGT 468
Query 413 TTATGCGGTTTCGATTGTTGGACCTTTCCCCATTGCAGTAACAAACCTTTTGGATTTGAC 472
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 469 TTATGCGGTTTCGATTGTTGGACCTTTCCCCATTGCAGTAACAAACCTTCTGGATTTGAC 528
Query 473 TAGACTGGATCTACATAACAACAAGTTGACTGGTCCAATCCCTCCCCAAATTGGGCGACT 532
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 529 TAGACTGGATCTACATAACAACAAGTTGACTGGTCCAATCCCTCCACAAATTGGACGACT 588
Query 533 GAAACGGCTGAAAGTACT 550
||||||||||||||||||
Sbjct 589 GAAACGGCTGAAAGTACT 606
> AT5G61250.2 | Symbols: AtGUS1, GUS1 | glucuronidase 1 | chr5:24632154-24635303
REVERSE LENGTH=1909
Length=1909
Score = 108 bits (58), Expect = 2e-22
Identities = 58/58 (100%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 1349 AATCAAATGATTATATATATTTAGATTGGAATAAACCACTTCCAGTATACAATAGTAT 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 AATCAAATGATTATATATATTTAGATTGGAATAAACCACTTCCAGTATACAATAGTAT 1852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69276752100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5