BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496280
Length=1891
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61250.2 | Symbols: AtGUS1, GUS1 | glucuronidase 1 | chr5:24... 2841 0.0
AT5G61240.2 | Symbols: | Leucine-rich repeat (LRR) family prot... 63.9 5e-09
> AT5G61250.2 | Symbols: AtGUS1, GUS1 | glucuronidase 1 | chr5:24632154-24635303
REVERSE LENGTH=1909
Length=1909
Score = 2841 bits (1538), Expect = 0.0
Identities = 1792/1910 (94%), Gaps = 35/1910 (2%)
Strand=Plus/Plus
Query 1 TCAACGCCAAGAACAAAGA-C-CTCTCTGCTCTGTTTTGAGATCCAGCTACTCTTCAAAG 58
||||| ||||||||||| | | | |||||||||||||||||||||| | | || ||
Sbjct 1 TCAACTCCAAGAACAAAAAGCAC-CTCTGCTCTGTTTTGAGATCCA---A--C--CACAG 52
Query 59 TTCAAACTAATCAAAAGTCCCGATTTCTTACTTCAGTCCA-GCTTTTTTCTCTCAAGTCA 117
||||||||||||||||||||| |||||| ||||||||| | || |||||||||| | |
Sbjct 53 TTCAAACTAATCAAAAGTCCCAATTTCTAACTTCAGTCTAGGC-TTTTTCTCTCCA-T-G 109
Query 118 GAT-TTTCA-TATCAGATCAACCAATC---A-AAACCAAAATGGGCTTTAA-G--GTTGT 168
||| || | | | ||||||||||||| | |||||||||||||||| || | |||||
Sbjct 110 GATCCTTGATTCTGAGATCAACCAATCGAAAGAAACCAAAATGGGCTTCAACGTTGTTGT 169
Query 169 GTTCTTGATTTCTCTGTTTCTAC-T--TCCTGTTACTTTTGGCAGCAACATGGAACGAAC 225
|||||||| || |||| |||||| | ||||||||||||||| |||||||||||||||||
Sbjct 170 GTTCTTGAGTTGTCTGCTTCTACTTCCTCCTGTTACTTTTGGTAGCAACATGGAACGAAC 229
Query 226 CACCTTGGTTATAGACGG-TGCACATGGAATCGCTGAGACCGATGAGAACTTTGTCTGCG 284
|||||||||||||||||| | ||| | |||||||||||||||||||||||||| ||||||
Sbjct 230 CACCTTGGTTATAGACGGCT-CACGTCGAATCGCTGAGACCGATGAGAACTTTATCTGCG 288
Query 285 CAACGCTTGATTGGTGGCCACCTGAAAAATGTAACTATGATCAGTGTCCTTGGGGTTACG 344
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 289 CAACGCTTGATTGGTGGCCACCTGAAAAATGCAACTATGATCAATGTCCTTGGGGTTACG 348
Query 345 CTTCTCTCATTAATTTGAACTTATCTTCTCCTCTTCTTGCTAAAGCTATTCAAGCTTTTA 404
| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 349 CATCTCTCATCAATTTGAACTTAGCTTCTCCTCTTCTTGCTAAAGCTATTCAAGCTTTTA 408
Query 405 GGACGTTGAGGATAAGAATAGGTGGTTCCTTGCAAGATCAAGTGATCTACGACGTAGGAG 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 409 GGACGTTGAGGATAAGAATAGGTGGTTCCTTGCAAGATCAAGTGATCTACGACGTTGGAG 468
Query 465 ACTTGAAGACTCCTTGCACTCAGTTTGAGAAGACAGACGATGGATTGTTCGGATTCTCTA 524
||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||||
Sbjct 469 ACTTGAAGACTCCTTGCACTCAGTTCAAGAAAACTGACGACGGATTGTTCGGATTCTCTG 528
Query 525 AAGGATGTTTGTATATGAAACGCTGGGACGAACTTAACCGTTTCTTTAATGCAACCGGAG 584
|||||||||||||||||||||| ||||||||| |||||| |||||| || ||||| ||||
Sbjct 529 AAGGATGTTTGTATATGAAACGTTGGGACGAAGTTAACCATTTCTTCAACGCAACGGGAG 588
Query 585 CTATTGTGACTTTCGGTTTGAACGCGTTGCACGGGAGAGATAAACTCAACGGAACTGCGT 644
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 589 CTATTGTGACTTTCGGTTTGAACGCGCTGCACGGGAGAAATAAACTCAACGGAACTGCGT 648
Query 645 GGGGAGGAGACTGGGATCATACCAACACTCAGGATTTCATGAACTACACAGTCTCAAAGG 704
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GGGGAGGTGATTGGGATCATACCAACACTCAGGATTTCATGAACTACACAGTCTCAAAGG 708
Query 705 GTTATGCTATAGACTCGTGGGAGTTAGGTAACGAGCTTAGTGGAAGCGGGATTTGGGCAA 764
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 709 GTTATGCTATAGACTCGTGGGAGTTTGGTAATGAGCTTAGTGGAAGCGGGATTTGGGCAA 768
Query 765 GCGTGAGTGTAGAGCTCTATGGGAAAGACTTGATTCTACTGAAAGATGTAATCAATAACG 824
|||||||||||||||| |||||||||||||||||| |||||||| |||||||||| ||||
Sbjct 769 GCGTGAGTGTAGAGCTTTATGGGAAAGACTTGATTGTACTGAAAAATGTAATCAAGAACG 828
Query 825 TTTACAAGAATTCTCGGACCAAGCCTTTGGTTGTAGCTCCAGGTGGATTCTTTGAAGAAA 884
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TTTACAAGAATTCTAGAACCAAGCCTTTGGTTGTAGCTCCAGGTGGATTCTTTGAAGAAC 888
Query 885 AATGGTACTCGGAGCTTCTTCGGCTCTCTGGACCCGGTGTTCTTGATGTCCTGACTCATC 944
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 889 AATGGTACTCGGAGCTTCTTCGGCTCTCTGGGCCTGGTGTTCTTGATGTCCTGACTCATC 948
Query 945 ATATATACAATCTTGGTCCAGGGAATGATCCTATGCTAGTGAATAGGATACTAGATCCAA 1004
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 949 ATATATACAATCTTGGTCCAGGGAATGATCCTAAGCTAGTGAATAAGATACTAGATCCAA 1008
Query 1005 ATTACTTGAGCGGAATTTCAGGAA-CATTTGCCAATGTAAACCGAACAATTCAAGAACAT 1063
||||||||||||||||||| |||| ||| || ||||| |||| ||||||||||||||||
Sbjct 1009 ATTACTTGAGCGGAATTTC-GGAATTATTCGCGAATGTGAACCAAACAATTCAAGAACAT 1067
Query 1064 GGACCTTGGGCTGCTGCTTGGGTTGGAGAAGCTGGTGGAGCCTTTAACAGCGGTGGCCAT 1123
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1068 GGACCTTGGGCTGCTGCTTGGGTTGGAGAAGCTGGTGGAGCCTTTAACAGTGGTGGCCGT 1127
Query 1124 CAGGTTTCCGAGACATTCATTAACAGTTTCTGGTACTTAGATCAGCTCGGTATTTCGTCG 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 CAGGTTTCCGAGACATTCATTAACAGTTTCTGGTACTTAGATCAGCTCGGTATTTCGTCG 1187
Query 1184 AAGCATAACACCAAAGTATACTGCAGACAAGCTTTGGTTGGAGGTTTCTACGGTCTGCTC 1243
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1188 AAGCATAACACCAAAGTATACTGCAGACAAGCTTTGGTCGGAGGTTTCTACGGTCTGCTT 1247
Query 1244 GAAAAGGAAACGTTTGTTCCCAATCCAGATTACTACAGCGCGCTTCTTTGGCATCGTTTG 1303
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1248 GAAAAGGAAACGTTTGTTCCAAATCCAGATTACTACAGCGCGCTTCTTTGGCATCGTTTG 1307
Query 1304 ATGGGTAAAGGCGTTCTCGGCGTTCAGACAACTGCCTCGGAGTATCTACGAGCTTACGTT 1363
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1308 ATGGGTAAAGGCATTCTCGGCGTTCAGACGACTGCCTCGGAGTATCTACGAGCTTACGTT 1367
Query 1364 CATTGCTCCAAAAGAAGAGCGGGTATAACGATTCTTCTGATCAATCTGAGTAAGAACACG 1423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1368 CATTGCTCCAAAAGAAGAGCGGGTATAACGATTCTTCTGATCAATCTGAGTAAGCACACG 1427
Query 1424 ACGTTTACGGTCGCAGTCAGCAATGGCGTGAAGGTTGTTTTGCAAGCAG-ATACGATGAA 1482
|||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct 1428 ACGTTTACAGTCGCAGTCAGCAATGGCGTGAAGGTGGTTTTGCAAGCAGAAT-CGATGAA 1486
Query 1483 GAGGAAATCTTTTC-TGGAAACAATCAAGAGCAAGGTTTCTTGGGTCGGAAACAAAGCTT 1541
||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1487 GAGGAAATC-GTTCTTGGAAACAATCAAGAGCAAGGTTTCTTGGGTTGGAAACAAAGCTT 1545
Query 1542 CGGATGGATATTTGAACAGAGAAGAGTATCACTTGAGTCCGAAAAACGGTGACTTGCGTA 1601
|||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1546 CGGACGGATATTTGAACAGAGAAGAGTATCACTTGAGTCCCAAAGACGGTGACTTGCGTA 1605
Query 1602 GCAAGATAATGCTCTTGAATGGTAACCCTTTGGTACCGACAGCCACCGGAGATATCCCAA 1661
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1606 GCAAGATAATGCTCTTGAATGGTAAACCTTTGGTACCGACAGCCACCGGAGATATCCCAA 1665
Query 1662 AGCTTGAGCCAGTCCGTCATGGTGTGAAATCTCCGGTTTATATCAATCCGCTGTCGATCT 1721
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 AGCTTGAGCCGGTCCGTCATGGTGTGAAATCTCCGGTTTATATCAATCCGCTGTCGATCT 1725
Query 1722 CTTTCATTGTGTTGCCTACCTTTGATGCTCCTGCTTGTTCTTGAAGAGGATGGTTATTGG 1781
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1726 CTTTCATTGTGTTGCCTACCTTTGATGCTCCTGCTTGTTCTTGAAGAGGATGGTAACTGG 1785
Query 1782 TGAAAATCAAACATTGAAGAACAGACCGTAAATTTCTTGGCAATTGTATATATTATCTAT 1841
|||||||||||||||||||||| || |||||||||||||||||||||||||| ||| ||
Sbjct 1786 TGAAAATCAAACATTGAAGAACT-ACTGTAAATTTCTTGGCAATTGTATATATGATCGAT 1844
Query 1842 GTAACACATACTATTGTATACTGGAAGTGGTTTATTCCAATCTAAATATA 1891
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 GTAACACATACTATTGTATACTGGAAGTGGTTTATTCCAATCTAAATATA 1894
> AT5G61240.2 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr5:24629256-24632202 FORWARD LENGTH=1493
Length=1493
Score = 63.9 bits (34), Expect = 5e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Minus
Query 1858 TATACTGGAAGTGGTTTATTCCAATCTAAATATA 1891
||||||||||||||||||||||||||||||||||
Sbjct 1493 TATACTGGAAGTGGTTTATTCCAATCTAAATATA 1460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93624016425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5