BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496281
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61260.1 | Symbols: | Plant calmodulin-binding protein-rela... 1868 0.0
AT5G07820.1 | Symbols: | Plant calmodulin-binding protein-rela... 158 2e-37
> AT5G61260.1 | Symbols: | Plant calmodulin-binding protein-related
| chr5:24637109-24638599 FORWARD LENGTH=1491
Length=1491
Score = 1868 bits (1011), Expect = 0.0
Identities = 1333/1480 (90%), Gaps = 56/1480 (4%)
Strand=Plus/Plus
Query 37 ACAAATCCTCCGAAGATGTCTAAAGAGAGTACTTCTGTGGAAACAGTACGTGTAAAGGAT 96
||||| ||||||||||||||| |||| || | ||| |||||||||||||||||||||||
Sbjct 52 ACAAACCCTCCGAAGATGTCTGAAGA-AG-GC-TCTTTGGAAACAGTACGTGTAAAGGAT 108
Query 97 GTGGAAAATGCGGAAGATGTTGTATCTGTGGTATCCAAGGGTCAAGAAGAGATTATACCA 156
|||||||||| |||||||||| || |||||||| |||||| |||||||||||||||||||
Sbjct 109 GTGGAAAATGTGGAAGATGTTATAGCTGTGGTAGCCAAGGATCAAGAAGAGATTATACCA 168
Query 157 GAGATCAATGAAGTGCCTAAGCCAGAAGGTGTGACTTTGAGACGTCATTCTACTGGAACA 216
||||| | ||||||||||||||| |||||| |||||||||||| || | | | | ||
Sbjct 169 GAGATTATTGAAGTGCCTAAGCCTCAAGGTGGGACTTTGAGACGCCA-T-T-C--G-AC- 221
Query 217 ATAGGTACACGAGCAACG-AAACCGCAGGTTCAGTCCCGCTATCGCGGGAATCATCGTGT 275
| || | |||| || | |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 222 -T-GG-A-ACGA-TAA-GTAAACCGCAGGTTCAGTCCCGTTATCGTGGGAATCATCGTGT 275
Query 276 GGGTTCGACTCATGATTTATGTAAACATGGGAAGAGGTGTGATCAAGATGATGCTGTGAA 335
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 276 GGGTTCGACTCATGATTTATGTAAACATGGGAAGAAATGTGATCAAGATGATGCTGTGAA 335
Query 336 ACCGTGGAAGATGGTTAGGAGAAAGAGTGTTGAAGGCTCAGATGTGATCAAAGTTGAGAC 395
||||||||||| | |||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 336 GCCGTGGAAGATTGCAAGGAGAAAGAGTGTTGAAGGTTCAGTTGTGATCAAAGTTGAGAC 395
Query 396 TCCAAGTTTGACAAGGAAGTCATTGGGAAGTGTGAGTAGACAGATTCC-GG-GT-ACCAA 452
||||||| |||||||||||||||||| |||||||||||||||| ||| || | |||||
Sbjct 396 ACCAAGTTCGACAAGGAAGTCATTGGGGAGTGTGAGTAGACAGAGTCCAGGTATAACCAA 455
Query 453 ACCAGAGAGTTCTGTGTCTGCAAAGAGAGATGTGTTGTCTGTCAA-AAGAAAACCATGTG 511
||| || |||||||| |||||||||||||||| ||| |||| || || |||||||||||
Sbjct 456 ACCGGATAGTTCTGTTTCTGCAAAGAGAGATGCCTTGGCTGTGAAGAA-AAAACCATGTG 514
Query 512 CTTCTGTGAATTCAGAATCTAGCTCCAAAGAAGGTAGTGAGATAACGAGATCTGTTGATG 571
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 515 CTTCTGTGAATTCAGAATCTAGCTCCAAAGAAGGTAGTGAGATAGCGAAATCTGTTGATG 574
Query 572 GTTTAAGCGTTAAAAGCAATGACAGGGCGCCGAAGAATAAAGAAAGCGAGATTACTCTAA 631
|||||||||||||||||||||| || |||| |||||||||||||| ||||| | ||| |
Sbjct 575 GTTTAAGCGTTAAAAGCAATGATAGAGCGCGGAAGAATAAAGAAACCGAGAGTGGTCTGA 634
Query 632 GTGGTTCAGCTGTTGTTAAGAAGGTTCCTAG-CTTGAGAAATGACAAGTCTAGTACTTCT 690
||||||||||||||||||||||||||||| | |||||||| ||| ||||| ||||||||
Sbjct 635 GTGGTTCAGCTGTTGTTAAGAAGGTTCCT-GCCTTGAGAACTGATAAGTCAAGTACTTC- 692
Query 691 ATAGAGAAGGTTTCAAAGATCAGTGGCGTTGGAAGTTCTAAGGTTTGTGCTCCAAAGAAT 750
| | | | ||||||||||||||||||||||||||||||||||||
Sbjct 693 ------------T-----A-C-G-GGCGTTGGAAGTTCTAAGGTTTGTGCTCCAAAGAAT 732
Query 751 CTGAAGAATGTGGAGAAGGCAAAGACGACTCAGACAATTAGCGGTGAAGATGTAAAAGAG 810
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 CTGAAGAATGTGGAGAAGGCAAAGACGACTCAGACAATTAGCGGTGAAGATGTAAAAGAA 792
Query 811 AAGACTGTGTGCGTTGTTGAATCAAGCGTTAAAGGTGTTAAGGGTGAGAAGCACCCATCA 870
||||||||||| ||||||||||| ||||| |||||||||||| |||| ||||| ||||||
Sbjct 793 AAGACTGTGTGTGTTGTTGAATCTAGCGTCAAAGGTGTTAAGAGTGAAAAGCAACCATCA 852
Query 871 TATGAGAAGAAAACCATGAAAAGTGGGCATAAAAGCTTGA---CTACTCCTATACGTGGT 927
| ||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||
Sbjct 853 TCTGAGAAGAAAACCATGAAAAGTGGGAATAAAAGCTTGAGTACTACTCCTAAACGTGGT 912
Query 928 TCTAGTCCTACTAAACAGATTCCTGGTAAAATCAGTACCGGTTTGACTAAGAAGAAAGAA 987
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 TCTAGTCCTACAAAACAGATTCCTGGTAAAATCAGTACCGGTTTGACTAAGAAGAAAGAA 972
Query 988 AGTGA-TACTGCGGAAGTTG---AAGCAAATCCGAAACCCGAGAGGAAGATTAGGCCTAA 1043
| || | |||| || |||| |||||||||| ||||| |||| |||| ||||||||||
Sbjct 973 ACTGGCT-CTGCAGACGTTGTTGAAGCAAATCCAAAACCGGAGAAGAAGGTTAGGCCTAA 1031
Query 1044 GAAGACAGGAGCAAAGGTGACTCTAGCTCGGCAGCTGACTTTCAAGAAAGGAAAGGTTCT 1103
||||||||||| |||||||| |||||||| |||| |||||||||||||||||||||||||
Sbjct 1032 GAAGACAGGAGTAAAGGTGAGTCTAGCTCAGCAGATGACTTTCAAGAAAGGAAAGGTTCT 1091
Query 1104 TGAGCCGAAACCCGAGGATTCTTCTCCGAAATGGATCAAGTTCAGAAAGAGGGTTGTGCA 1163
||| || |||||||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 1092 TGATCCTAAACCCGAGGATTCTTCTCCGAGATGGATCAAGTTCAAAAAGAGGGTGGTGCA 1151
Query 1164 GGAACTGAAAACGCAATCCGAAGGGAAGAAGAAGAATCTGAAAGATAGAAGATTGGGTGT 1223
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1152 GGAACTGAAAACGCAATCCGAAGGGAAGAAGAAGAATCTTAAAGATAGAAGATTGGGTGT 1211
Query 1224 TGAGACGAAATCTGATTCTTGTGAAGGAAGTAAACGTGAGAAAGTTGTTCTGAGGCATCG 1283
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 TGAGACGAAAACAGATTCTTGTGAAGGAAGTAAACGTGAGAAAGTTGTTCTGAGGCATCG 1271
Query 1284 AAAAGTAGAAGGGAAGAAGAAAATGATAACATTGTTCAACAATGTGATTGAGGAGACTGT 1343
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1272 AAAAGTAGAAGGGAAGAAGAAAATGATAACATTGTTTAACAATGTGATTGAGGAGACAGT 1331
Query 1344 GAATAAGCTAACAAAGGTGAGAAAGCACAAAGTGAAAGCTCTTATTGGTGCTTTTGAAAC 1403
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1332 GAATAAGCTAACAAAGGTGAGGAAGCACAAAGTGAAAGCTCTTATTGGTGCTTTTGAAAC 1391
Query 1404 TGTTATCTCTCTTCAGGACACTAA---GACATCTCTTAAACCTCAGAGCAAAGCCACGAC 1460
|||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||
Sbjct 1392 TGTTATCTCTCTTCAGGACACTAATAAGACATCTCACAAACCTCAGAGCAAGGCCACAAC 1451
Query 1461 ATCTGCGTCTAAGGTTAGACCTTTGGTCTCCGAACAGTGA 1500
|||||| ||||||||||||||||||||||||||||| |||
Sbjct 1452 ATCTGCTTCTAAGGTTAGACCTTTGGTCTCCGAACAATGA 1491
> AT5G07820.1 | Symbols: | Plant calmodulin-binding protein-related
| chr5:2498749-2501209 REVERSE LENGTH=2063
Length=2063
Score = 158 bits (85), Expect = 2e-37
Identities = 291/382 (76%), Gaps = 47/382 (12%)
Strand=Plus/Plus
Query 1079 TGACTTTCAAGAAA-GGAAAGGTTCTTGAGCCGAAACCCGAGGATTCTTCTCCGAA-ATG 1136
||| |||||||||| ||||| |||||||| || ||||| || ||||| || | || ||
Sbjct 1536 TGAATTTCAAGAAAGGGAAA-GTTCTTGAACCAAAACCAGAAGATTCCACTAC-AACATC 1593
Query 1137 GATCAAGTTC-AGAAAGAGGGTTGTGCAGGAACTGAAAA--C-G--C-A---ATCCGAA- 1185
|||||| ||| || |||| ||||| || |||| |||| | | | | || |||
Sbjct 1594 GATCAAATTCAAG-AAGATAGTTGTTCAAGAAC-CAAAACTCAGAACAAGTGATGTGAAC 1651
Query 1186 GGGAAGAAGAAGAATCTGAAAGATAGAAGATTGGGTGTTGAGACGAA-ATCTGATTCTTG 1244
|||||||||| |||||||||| |||| ||||||| | ||| || | | | |
Sbjct 1652 AAAAAGAAGAAGAGCCTGAAAGATAAAAGAGAAGGTGTTG-G--GAAGAT-T-A-AC-GG 1704
Query 1245 TGAAGGAAGTAAACGTGAGAAAGTTGTTCTGAGGCATC-GAAAAGTAGAAGGGAAGAAGA 1303
|||| | ||||||| ||||||||||||||||| || | ||||||| |||| ||||||||
Sbjct 1705 TGAA-G--GTAAACGAGAGAAAGTTGTTCTGAGACA-CAGAAAAGTGGAAGTGAAGAAGA 1760
Query 1304 AAATGATA-ACA-TTGTTCAACAATGTGATTGAGGAGACTGTGAATAAGC-T-AACAAAG 1359
|| || | ||| || ||||| ||||||||||| |||||||||||||||| | || ||
Sbjct 1761 AATTG-CAGACACTT-TTCAATAATGTGATTGAAGAGACTGTGAATAAGCTTGAA-GAA- 1816
Query 1360 GTGA-G-AAAGCACAAAGTGAAAGCTCTT-ATTGGTGCTTTTGAAACTGTTATCTCTCTT 1416
|||| | |||| ||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 1817 GTGAGGAAAAG--TAAAGTTAAAGC-ATTGGTTGGTGCTTTTGAAACTGTTATCTCTCTT 1873
Query 1417 CAGGACA-CTA-AGA-CATCTC 1435
|| || | | | ||| ||||||
Sbjct 1874 CAAGATAACAACAGAACATCTC 1895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73995603330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5