BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496286
Length=1839
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61300.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1168 0.0
> AT5G61300.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G07790.2);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:24650704-24652776 REVERSE LENGTH=1875
Length=1875
Score = 1168 bits (632), Expect = 0.0
Identities = 949/1092 (87%), Gaps = 62/1092 (6%)
Strand=Plus/Plus
Query 714 TATAGAATCTGAGCAACCCCGAGAGTTTGTTTCAGCTTCATTGCACGGAAAACGCGGATC 773
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 756 TATAGAATCTGAGCAACCCCGAGAGCTTGTTTCAGCTTCATTGCACGGAAAACACGGATC 815
Query 774 AGAACCATCACGATCGATAGTTCTAGCGCTCCCATGTTCT-GAAACCATTTCACTCTTCC 832
|||||| ||| ||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct 816 AGAACCGTCAAGATCGTTAGTTCTAGCGCTCCCATGTT-TGGAAACCATTTCACTCTTCC 874
Query 833 ACAAACATTGCTCACGGCCTAGGAAGAAAGCTAAATATGGAGCAAAATTCATCAATGTTA 892
||| || |||||||| ||| ||||||||||||||| |||||| ||| || ||||||
Sbjct 875 ACACACGTTGCTCACAGCCAAGGAAGAAAGCTAAACGTGGAGC-AAA---AT--ATGTTA 928
Query 893 AAAATATTCCTCGCAGCAAATCCCGGAAAGGCTCAAATCTTGAATCGAACGTTGGAGTTA 952
|||| | |||||||| ||||||||||||||||||||||||||| |||||| || | | |
Sbjct 929 AAAAAAATCCTCGCACCAAATCCCGGAAAGGCTCAAATCTTGACTCGAAC-TTCG-G-T- 984
Query 953 GTGAAGATGACAACCGTTCACTGAGTACTGCCTCATACATCCCTGAATCTGACCATAATC 1012
|| | || | | || | ||||||||||||||||||||||| ||||||||
Sbjct 985 GT-----T---AA----TGA---AG-A-TGCCTCATACATCCCTGAATCTGCCCATAATC 1027
Query 1013 TGGAGAAAGGGAGGTT-AAGGTCTCTGCCTGAGATTAAGGGAAGACGTTGTAAACCACAC 1071
||||| ||| | ||| ||| || | ||||||| ||||| ||| | |||||||||||||
Sbjct 1028 TGGAGGAAGTTA-GTTCAAGTTCACAGCCTGAGTTTAAGAGAAAATGTTGTAAACCACA- 1085
Query 1072 A-TAGAACCAGGCAAAGTTACGAGAAAGATTTCAAGAACCAAATCAAAGGCCAGAGGGAG 1130
| ||||||||| ||| |||| |||||||| ||||||||| ||||||||||||||||||||
Sbjct 1086 AGTAGAACCAGACAAGGTTATGAGAAAGAGTTCAAGAACTAAATCAAAGGCCAGAGGGAG 1145
Query 1131 CTTTCTTGTTACAGAGGAAGAGGAACAAGAAAACTGTGTAGCAGCAGCAGAGGCTTTAGT 1190
||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||| ||||
Sbjct 1146 CTTTCTTGTTAGAGAGGAAGAGGAACAAGAAAAATCTGTAGCAGCAGCAGACGCTATAGT 1205
Query 1191 TGATATGTCATTATCAGATTCAGCTAGAAAATCAAGCATCAAAACCTCTGATTGTATCAA 1250
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1206 TGATATGTCATTATCAGATTCAGCTAGAAAGTCAAGCATCAAAACCTCTGATTGTATCAC 1265
Query 1251 TCCTCTGCATTGGTTTGCCATAATCGCATCTTCGGTTGTTGAAGACTCAAAGAGTGAAGT 1310
|||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 1266 TCCTCTGCATTGGTTTGCTAGAATCGCATCTTCGGTTGTTGAGGACTCAAAGAGTGAAGT 1325
Query 1311 TGGATTATCCA-TGGCCGGGTTCCACTCTAATTACGAAATAGACTATTTTGAGGCAATGA 1369
||||||||| | || |||| ||| |||||| | || || | |||||| ||||||||||
Sbjct 1326 TGGATTATC-AGTGCCCGGATTCAACTCTAGTAAC-AA-T-GACTATCCCGAGGCAATGA 1381
Query 1370 CATTGCAGCTAACAGAGATGAAGCCAGAGGAGCAAAGAACAAACACTTCAGTCTCTAA-T 1428
|| |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| |
Sbjct 1382 CACTGCAGCTAACAGAGATGAAGTCAGAGGAGCAAAGAACAAACACTCCAGTCTATAACT 1441
Query 1429 ATTGGCCA-TCCTAAACACAAGAGAACCCTGCGCAGTCGAGGAAAGCGACAACAACACAA 1487
||| | | ||||||||||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct 1442 -TTG-CTACTCCTAAACACAAGAGGACCCTGCACAGTCGAGGAAAGCGTCAACAACACAA 1499
Query 1488 CGAGTTTCTCCTGAGCCTAAGCACTTTTACCGGAAACGAAGCCTCTCGGGATGTACAGAA 1547
||||||||||| ||||||||||||||||| ||||||| |||||||| || | |||||||
Sbjct 1500 CGAGTTTCTCCCGAGCCTAAGCACTTTTAACGGAAACAAAGCCTCTAAGGTTCTACAGAA 1559
Query 1548 GATAGGAAGGCTAATTGAAGCTACTGAAAGGAATGATGCTCACTCAAGCTTGATGGAAAA 1607
||||| ||||| || |||||||||||| | |||||||||||||||||||| || |
Sbjct 1560 GATAGAAAGGCCAAGTGAAGCTACTGAGACGAATGATGCTCACTCAAGCT--AT--A--- 1612
Query 1608 TATGGTAATCGATTGGGGAACCGTAACAAAACGAAGAAGAGGCATCAGAAGTCCTGC-TG 1666
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1613 T--GGTAATCGATTGGGGAACCGTAACAAAACGAAGAAGAGGCATCAGAAGTCCTGCCTG 1670
Query 1667 TTAATACCAAAACTTCCATGCCTTTTCTGCTTTCAGATTCTTGAAGAATCAACGTCTCGT 1726
|||||||||| ||| ||| |||||| ||||||||||||||||||||||||| |||| ||
Sbjct 1671 CTAATACCAAAGCTTACATACCTTTTTTGCTTTCAGATTCTTGAAGAATCAAAGTCTAGT 1730
Query 1727 TACACTTACAGTAATCACACCACATAGGAGATATATACTGAAAA-A-TGAAAGTTTTGtt 1784
|||| ||||||||||||||||||||||||||||| |||| | ||||| |||||
Sbjct 1731 TACA------GTAATCACACCACATAGGAGATATATACT-AAAACAGTGAAACTTTTGGG 1783
Query 1785 ttttttGCTTTT 1796
||||| ||||||
Sbjct 1784 TTTTT-GCTTTT 1794
Score = 414 bits (224), Expect = 1e-114
Identities = 309/348 (89%), Gaps = 13/348 (4%)
Strand=Plus/Plus
Query 316 TCTGCCAAGATTGATGAAGCTGGAATCTCTGGAGATGAGATTGATAAGTCTGGAGAGGTC 375
||||||||||||||||||||||| || |||||| ||||||||| |||||||||||||
Sbjct 331 TCTGCCAAGATTGATGAAGCTGGTATTTCTGGAAATGAGATTGGTAAGTCTGGAGAGAAG 390
Query 376 GTCTTGGATCTTGAATTACCGTCTTAC--G----GTGATATATGGGAAGAAGAAGCTTCA 429
||||||||| |||||||||| |||||| | ||||||||||||||||||||| ||||
Sbjct 391 GTCTTGGATTTTGAATTACCATCTTACGGGTATCGTGATATATGGGAAGAAGAAGGTTCA 450
Query 430 AAGAATGGGGAAGTCCTTGAAGTTCCCAACTTTCCTAAAGATCAATCTCCAAGAAGCATG 489
|||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct 451 AAGAATGGAGAATTCCTTGAAGTTCCGTACTTTCCTAAAGATCAATCTACAAGAAGCAGG 510
Query 490 TCTCTCGAATCAGTTGTCCAGCCGAAAAGTGTGC---ATTTACTTGGA-TTGTCAAATTT 545
||||||||||||||| |||||||| ||||||||| |||||| | || ||||||| |||
Sbjct 511 TCTCTCGAATCAGTTCTCCAGCCGGAAAGTGTGCAGGATTTACCT-GATTTGTCAAGTTT 569
Query 546 CAAATGTATACTCGACTTAAATGAACCTGCCAGGATCGAGGCACATTCAGATTATGAGCT 605
||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||||||
Sbjct 570 CAAATGTATACTCGATTTAAATGAACCTTCCAGTATCGAGGAACATTCAGATTATGAGCT 629
Query 606 TAATCAGTTCC-TAATTCCAGCCAAAACAAGGAGTGAAAGAGCAGAAC 652
||||||||||| || | |||||| ||||||||||||||||||||||||
Sbjct 630 TAATCAGTTCCCTACT-CCAGCCCAAACAAGGAGTGAAAGAGCAGAAC 676
Score = 357 bits (193), Expect = 2e-97
Identities = 278/315 (88%), Gaps = 21/315 (7%)
Strand=Plus/Plus
Query 1 ATGGAAATGCAAGAGGATAGCTTGTGGCGTCTGTATCCTGTACATGATATGGATACGGTC 60
||||||||||||||||||||||||||| || ||||||||||||| ||||| ||||||| |
Sbjct 1 ATGGAAATGCAAGAGGATAGCTTGTGGAGTTTGTATCCTGTACACGATATTGATACGGCC 60
Query 61 GTAACCAATAGATTACTATACTGTGATCTTTATTTGAGACAGTACAAGGAAACATTGAAA 120
|||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAACGAATAGATTAGTCTACTGTGATCTTTATTTGAGACAGTACAAGGAAACATTGAAA 120
Query 121 CAGACCATGCTTGGCCAAGAATCTATCTTTGAAAATCAGATCTACGAGCTTCATCGTCTG 180
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 121 CAGACCATGCTTGGCCAAGAATCTGTCTTTGAAACTCAGATCTACGAGCTTCATCGTCTG 180
Query 181 TATCAAAGGCAGAAGGATCTGATGATTGAAATGGAGGAAACCAACAACTTGTACACTCAA 240
|||||||||||||||||||||||||| || ||||||||||| | || |
Sbjct 181 TATCAAAGGCAGAAGGATCTGATGATGGACATGGAGGAAAC-------T----CA---A- 225
Query 241 CCTCAACATTTATTCCCAAATGCCGGGGTCTCTAGTCCTAGAAGAAGCATACACTGGATG 300
| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 226 C---A---TTTATTCCCAAATGCCGGGGTCTCTAGTCCTAGAAGAAGTAGACACTGGATG 279
Query 301 GGTTTAAGCATCTCT 315
|||| ||||||||||
Sbjct 280 GGTTCAAGCATCTCT 294
Score = 63.9 bits (34), Expect = 5e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 683 AATGTCAAGCTGAGAATGGAATTGACTTGAATAT 716
||||||||||||||||||||||||||||||||||
Sbjct 692 AATGTCAAGCTGAGAATGGAATTGACTTGAATAT 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91013588085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5