BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496289
Length=338
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61310.1 | Symbols: | Cytochrome c oxidase subunit Vc famil... 298 2e-80
> AT5G61310.1 | Symbols: | Cytochrome c oxidase subunit Vc family
protein | chr5:24653422-24654860 REVERSE LENGTH=405
Length=405
Score = 298 bits (161), Expect = 2e-80
Identities = 227/257 (88%), Gaps = 11/257 (4%)
Strand=Plus/Plus
Query 1 TTCTTCGTATTGGAACATTCAATTTA-ACCAATTTCTTG-GATTCCAGTGTAAAGTGACA 58
|||||||||||||||||| ||| ||| | ||| || || || ||| | | |||| ||
Sbjct 32 TTCTTCGTATTGGAACATACAA-TTATA-CAA-TTGGTGTGA--GCAG-G-AGAGTGGCA 84
Query 59 AAGAAATGGCTGGGCACAAGATCGCACGCGCAACTTTAAAAGGCCCAAGTGTTGTGAAGG 118
|||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 85 AAGAGATGGCTGGGCACAAGATAGCACACGCAACTTTAAAAGGCCCAAGTGTTGTGAAGG 144
Query 119 AGTTAGTTATTGGCCTCGCACTCGGG-CTAGCGGCTGGTGGACTATGGAAGATGCACCAC 177
||||||||||||| ||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct 145 AGTTAGTTATTGGTCTCACACT-GGGACTAGCGGCTGGTGGGCTATGGAAGATGCATCAC 203
Query 178 TGGAACGAGCAGAGGAAAACAAGAGCCTTTTATGAGTTGCTTGAGAGAGGCGAGATTGGC 237
||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||
Sbjct 204 TGGAACGAGCAGAGGAAAACAAGAGTCTTCTATGATTTGCTTGAGAGAGGCGAGATTGGT 263
Query 238 GTTGTTGTTGCAGAGGA 254
||||||||| | |||||
Sbjct 264 GTTGTTGTTACCGAGGA 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15784073186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5