BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496296
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61370.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2121 0.0
> AT5G61370.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:24671770-24673657 REVERSE LENGTH=1888
Length=1888
Score = 2121 bits (1148), Expect = 0.0
Identities = 1353/1452 (93%), Gaps = 13/1452 (1%)
Strand=Plus/Plus
Query 13 GTCAGATCAAACGGGATTGTGTTTGTAACGAATACAATAAAGCTGACACGTTATTTTTGC 72
||||||| |||| || || || | |||||| ||| ||| ||||||||||| ||||||
Sbjct 202 GTCAGATTAAACAGGTTTACGTATCTAACGAGTACTGCAAAACTGACACGTTACTTTTGC 261
Query 73 TCTCATCATTTGGTAGATCGACCGGACCGTGCATCGACTGAATTGCAGGAAGTTATTAGG 132
||||| || || ||| | |||| || || | | || | | ||||| ||||||||| ||
Sbjct 262 TCTCACCA-TT--TAG-TTGACC-GATCG-GAAACGGC-G--TTGCATGAAGTTATTCGG 312
Query 133 ATTGTTTCTTCCCCAATTGGTGGTTTAGATGATCTTGAAGAAAACTTGAACCAGGTTTCG 192
|| |||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 313 ATAGTTTCTTCTCCAGTTGGTGGTCTAGATGACCTTGAAGAAAACTTGAACCAGGTTTCT 372
Query 193 GTTTCTCCATCATCCAACCTTGTTACCCAAGTGATTGAGTCTTGCAAGAACGAGACTTCA 252
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 GTTTCTCCATCATCAAACCTTGTTACCCAAGTGATTGAGTCTTGCAAGAACGAGACTTCA 432
Query 253 CCGAGAAGGTTGTTGAGATTTTTCTCCTGGTCGTGTAAAAGCCTGGGATCTAATGTACAC 312
||||||||| ||||||| |||||||||||||||||||||||| ||||||||| | |||||
Sbjct 433 CCGAGAAGGCTGTTGAGGTTTTTCTCCTGGTCGTGTAAAAGCTTGGGATCTAGTTTACAC 492
Query 313 GACAAGGAGTTCAACCATGTCCTAAGAGTTTTGGCTGAGAAGAAGGATCACACAGCTATT 372
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 GACAAGGAATTCAACTATGTCCTAAGAGTTTTGGCTGAGAAGAAGGATCACACAGCTATG 552
Query 373 CAGATACTCTTATCAGATCTCAGGCAGGAGAATCGGGCGATGGACAAGCAAACGTTTAGC 432
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 553 CAGATACTCTTATCAGATCTCAGGAAGGAGAATCGGGCGATGGACAAGCAAACGTTTAGC 612
Query 433 ATTGTCGCTGAAACTCTGGTTAAGATTGGTAAGGAAGAAGATGCAATAGGTATCTTCAAG 492
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 613 ATTGTCGCTGAAACTCTGGTTAAGGTTGGTAAGGAAGAAGATGCAATAGGTATCTTCAAG 672
Query 493 ATCCTGGACAAGTTTT-TATGCCCACAAGATAGCTTT-ACTGTGACGGCTATTATAAGTG 550
||| ||||||| |||| | |||||||||||| | ||| |||||||||||||||||||| |
Sbjct 673 ATCTTGGACAAATTTTCT-TGCCCACAAGAT-GGTTTCACTGTGACGGCTATTATAAGCG 730
Query 551 CGCTCTGTTCCAGAGGACATGTGAAGAGAGCATTGGGAGTTATGCATCATCACAAGGATG 610
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CTCTTTGTTCCAGAGGACATGTGAAGAGAGCATTGGGAGTTATGCATCATCACAAGGATG 790
Query 611 TAATCTCAGGGAATGAATTGTCTGTGTATAGAAGTCTTTTATTCGGGTGGTCGGTACAAA 670
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TAATATCCGGGAATGAATTGTCTGTGTATAGAAGTCTTTTATTCGGGTGGTCGGTACAAA 850
Query 671 GAAACGTGAAGGAAGCAAGAAGAGTTATACAAGATATGAAATCAGCGGGGATTACACCGG 730
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 851 GAAACGTGAAGGAAGCAAGAAGAGTTATACAAGATATGAAATCAGCAGGGATTACACCGG 910
Query 731 ATTTGTTCTGTTTCAACTCGTTGCTTACCTGCCTCTGCGAAAGAAACGTGAATCGAAACC 790
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 911 ATTTGTTCTGTTTCAACTCGTTGCTGACCTGCCTTTGCGAAAGAAACGTGAATCGAAACC 970
Query 791 CATCTGGGCTTGTTCCTGAAGCTTTGAATATTATGTTGGAGATGAGGTCTTACAAAATCC 850
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 CGTCTGGGCTTGTTCCTGAAGCTTTGAATATTATGTTGGAGATGAGGTCTTACAAAATCC 1030
Query 851 AACCTACGTCTATTAGTTACAACATATTGCTTTCTTGTCTAGGAAGGACGAGAAGGGTGA 910
||||||||||||| ||||||||||| ||||| |||||| | |||||||| || |||||||
Sbjct 1031 AACCTACGTCTATGAGTTACAACATTTTGCTCTCTTGTTTGGGAAGGACTAGGAGGGTGA 1090
Query 911 GAGAGTCTTGCCAGATTTTACAACAGATGAAGAGGTCGGGATGTGATCCCGATACAGCGA 970
||||||| |||||||||||| |||||||||| || |||||||||||||| ||||||| ||
Sbjct 1091 GAGAGTCCTGCCAGATTTTAGAACAGATGAAAAGATCGGGATGTGATCCGGATACAGGGA 1150
Query 971 GCTATTACTTTGTTGTGAGGGTTCTGTATTTAACAGGAAGGTTTGGTAAAGGAAACCAAA 1030
|||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1151 GCTATTACTTCGTTGTGAGGGTCCTGTATTTGACAGGAAGGTTTGGTAAAGGCAACCAAA 1210
Query 1031 TTGTGGATGAGATGATCGAGAGAGGCCTGAGACCCGAACGCAAATTCTATTATGATCTGA 1090
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1211 TTGTGGATGAGATGATCGAGAGAGGATTTAGACCCGAACGCAAATTCTATTATGATCTGA 1270
Query 1091 TCGGGGTTCTTTGTGGGGTCGAGCGGGTAAATTTTGCGCTTCAATTGTTTGAGAAGATGA 1150
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 1271 TCGGGGTTCTTTGTGGGGTCGAGCGGGTTAACTTTGCTCTTCAATTGTTTGAGAAGATGA 1330
Query 1151 AGAGAAGCTCAGTGGATGGTTATGGTCCGGTTTATGATCTGCTCATTCCAAAACTATGTA 1210
||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1331 AGAGAAGCTCAGTGGGTGGTTATGGTCAGGTTTATGATCTGCTCATACCAAAACTATGTA 1390
Query 1211 AAGGAGGAAACTTTGAGAAAGGAAAAGAGCTTTGGGAAGAGGCAATGTCACTTAATGTTA 1270
|||||||||||||||||||||||| ||||||||||||||||||| ||||| || ||||||
Sbjct 1391 AAGGAGGAAACTTTGAGAAAGGAAGAGAGCTTTGGGAAGAGGCATTGTCAATTGATGTTA 1450
Query 1271 CACTTAGTTGCTCCATTAGTTTGCTTGATCCATCTGTCACAGAGGTTTTCAAACCTATGA 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 CACTTAGTTGCTCCATTAGTTTGCTTGATCCATCTGTCACAGAGGTTTTCAAACCTATGA 1510
Query 1331 AGAAGAAAGAAGAAGCTGCAATGGTGGATCGCCGTGCACTTAACTTGAAGATTCACGCTA 1390
||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1511 AGATGAAAGAAGAAGCTGCAATGGTGGATCGTCGTGCTCTTAACTTGAAGATTCACGCTA 1570
Query 1391 CAATGAACAAAGCAAAGCCAAAACTGAAACCAAAACCGAAACGCAGGAGCAAGACAAAGA 1450
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1571 GAATGAACAAAACAAAGCCAAAACTGAAACTAAAACCGAAACGCAGGAGCAAGACAAAGA 1630
Query 1451 AGAAGAATCTGC 1462
||||||||||||
Sbjct 1631 AGAAGAATCTGC 1642
Score = 180 bits (97), Expect = 4e-44
Identities = 133/149 (89%), Gaps = 8/149 (5%)
Strand=Plus/Plus
Query 1506 TAGTAATGCAGAAGCAAAGGACATGAGATTATTTCGTTGTTCTCTTTGTCTCATTGATTC 1565
|||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||
Sbjct 1744 TAGTAATGCAGAAGCAAAGGACATGAGATTCTTTTGTTGTTCTCTTTGTCCCATTGATTC 1803
Query 1566 TTATT-CTGAAAAAT-TCCAGTTTTGAAGAATACAAA-CAA-AGACAAAAGAATCTTGTG 1621
||||| | ||||||| | ||| ||||||||||||| ||| |||||| |||| |||||
Sbjct 1804 TTATTAC-GAAAAATATGG-GTTCTGAAGAATACAAAACAAGAGACAA--GAATATTGTG 1859
Query 1622 ATCAATTCGAATGTGTTATTTTTACAAGT 1650
||||||| |||||||||||||||||||||
Sbjct 1860 ATCAATTGGAATGTGTTATTTTTACAAGT 1888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81525685080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5