BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496298
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61390.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 2519 0.0
> AT5G61390.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr5:24678662-24680944 REVERSE
LENGTH=1691
Length=1691
Score = 2519 bits (1364), Expect = 0.0
Identities = 1577/1679 (94%), Gaps = 17/1679 (1%)
Strand=Plus/Plus
Query 1 TCATATAAATCTCTGCTCAATTTCGATAAAAAGTTGAATCCTTTTTCACATTTTCCGCTC 60
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 16 TCATATAAATCTCTGCTCATTTTCGATAAAAAGTTGAATCC-TTTTCACATTTTCCGCTC 74
Query 61 AATTCGATCCGACCCGTTAACAATGGTTGGTCTAACTACACCAGAGGATCGTTCAGAGAT 120
||||||||| || |||||||||||||||||||||| || | |||||||||||||||||
Sbjct 75 AATTCGATCTTACATGTTAACAATGGTTGGTCTAACTCCAGCTGAGGATCGTTCAGAGAT 134
Query 121 TGCCTTTTTCGACGTCGAGACGACTATTCCGTTCCGAGCTGGTCAAGGGTACGCGATTCT 180
|||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 135 TGCCTTTTTCGACGTCGAGACGACAATTCCGTTCCGAGTTGGTCAGGGGTACGCGATTCT 194
Query 181 GGAGTTTGGATCGATCCTGGTTTGCCCCAAGAAGCTTGTGGAGCT-AAGAAACTACTCTG 239
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 195 GGAGTTTGGATCGATTCTGGTTTGCCCCAAGAAGCTTGTGGAGCTGAA-AAACTACTCTG 253
Query 240 TCCTGGTTCGACCCGCTAATCTCAACCTCATCACGCCTCGCTCCGTGAAGTGCAACGGCA 299
| |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 254 TTCTGGTTCGTCCTGCTAATCTCAACCTCATCACGCCTCGGTCCGTGAAGTGCAACGGCA 313
Query 300 TCAAACGAGAAGACGTTGAATCAGCTCCTACGTTTGCAGATATCGCCGATACCGTTTACG 359
||||||| |||||||| |||||||||| ||| ||||||||||||||||| ||||| ||||
Sbjct 314 TCAAACGCGAAGACGTCGAATCAGCTCTTACCTTTGCAGATATCGCCGACACCGTCTACG 373
Query 360 ATATTCTTCATGGAAGGATATGGGCAGGTCACAATATATTGAAGTTTGATTGTCCAAGGA 419
||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 374 ATATTCTCCATGGAAGGATATGGGCAGGTCATAACATATTGAAGTTCGATTGTCCAAGGA 433
Query 420 TAAGAGAAGCATTTGCTGAGATTGGACGAGATCCACCAGAGCCAAAGGGCACTATTGACT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 434 TAAGAGAAGCATTTGCTGAGATTGGACGAGATCCACCAGAGCCAAAGGGCACCATTGACT 493
Query 480 CGTTGGCTTTGCTTACTCAAAGGTTTGGGAGGAGAGCTGGCGATATGAAGATGGCGACTT 539
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 494 CCTTGGCTTTGCTTACTCAAAGGTTTGGGAGAAGAGCTGGTGATATGAAGATGGCGACTT 553
Query 540 TGGCTGCATACTTTGGACTTGGCAACCAGACGCATAGGAGTCTGGACGATGTCAGGATGA 599
||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 554 TGGCTACATACTTTGGACTTGGAAACCAGACGCATAGGAGTCTGGACGATGTAAGGATGA 613
Query 600 ATTTCGAGGTTCTCAAGTATTGTGCCACTGTTTTGTTCTTGGAGTCAAGTCTTCCGGATG 659
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 614 ACTTCGAGGTTCTCAAGTATTGTGCCACTGTTTTGTTCTTGGAGTCAAGTCTTCCAGATG 673
Query 660 AACTTATAGAGAACTCGGTTACTACTACTACTCCAGAAACAAGTTCAAGAAGGCGTAGGA 719
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 674 AACTTATAGAGAACTCGGTTACTACTACTACTCCTGAAACTAGTTCAAGAAGGCGTAGGA 733
Query 720 ATATCAAAACATCTCCTCTGCAATCTCCTGCTGATCATCAGACAGGAGAGAATAGT-ACA 778
||| |||| |||||||||||||||||| ||||||| |||||||||||||| | | |||
Sbjct 734 CTATAAAAAAATCTCCTCTGCAATCTCCCACTGATCAGCAGACAGGAGAGAACA-TGACA 792
Query 779 ACTATACCTATTTTATCATTTGTTTCATCCGCAGAAGCTCCAACGGATCCGTTTGATATG 838
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 793 ACTATACCTATTTTATCATTTGTTTCATCCGCAGAAGCTCAAACGGATCCATTTGATATG 852
Query 839 AGCACTTTGAGGAACGAAATAGCCCCAGAGGTTCTTCAATCAGATGTTCCCATGGAAGAA 898
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 853 AGCACTTTGAGGAACGAAATAGCCCCTGAAGTTCTTCAATCAGATGTTCCCATGGAAGAA 912
Query 899 GAACAAAATCAGCAGTCTGAGACTGTTGCCTCTGAAGGTACCGGTGACCAGGAAGGATTC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 GAACAAAATCAGCAGTCTGAGACTGTTGCCTCTGAAGGTACCGGTGACCAGGAAGGATTC 972
Query 959 TTGGAGCTAGATAAAATATCTATTTCAAGTATCAGAGCAACTCATGTCCCATTATATGAC 1018
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 973 ATGGAGCTAGATAAAATATCTGTTTCAAGTATCAGAGCAACTCATGTCCCGCTATATGAC 1032
Query 1019 GGGAGCCAAACAATGAAGGTACAGCTCTGCCTTGGGGACAGACCCCTTCAGCTCCATTGT 1078
|||||||||||||||||| | || |||| |||||||||||||||||||||||||||||||
Sbjct 1033 GGGAGCCAAACAATGAAGCTGCAACTCTTCCTTGGGGACAGACCCCTTCAGCTCCATTGT 1092
Query 1079 CCTCGTCTGAAAGTACGGTTTGGAATCAATGGGAAATTTATGGATAAAGCTGGGAGACGG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1093 CCTCGTCTGAAAGTACGGTTTGGAATCAATGGGAAATTTATGGATAAAGCTGGAAGACGG 1152
Query 1139 AGGTTGAACTTTGTAGTTGGTCTGTATCCAAGTCTCTGCAACGTACTTCAAGAATGTGAC 1198
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1153 AGGTTGAACTTTGTAATTGATCTGTATCCAAGTCTCTGCAACGTACTTCAAGAATGCGAC 1212
Query 1199 AATGCTGCACAGACAATATCTGTTGATTCAGGCAGCGATTCTGACTGGAACCCTGTGGTC 1258
| ||||||||||||||||||||||||||||||||| | |||||||||||||||| | |||
Sbjct 1213 AGTGCTGCACAGACAATATCTGTTGATTCAGGCAGTGGTTCTGACTGGAACCCTCTAGTC 1272
Query 1259 ATTCCAATGAAAGGATTTCTGAACTGTCCCACCGCAAGGATACATATACCCACAGAGTTA 1318
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1273 ATTCCAATGAAAGGATTTCTGAACTGTCCCACTGCAAGGATACATATACCCACAGAGTTA 1332
Query 1319 AATGGAGATGTAGACCGGTATGCAGCTGAGATACACCAGAAAGAGTTCTCTGGAGCTATT 1378
||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1333 AATGGAGATATAGATCGGTACGCAGCTGAGATACACCAGAAAGAGTTCTCTGGAGCTACT 1392
Query 1379 GCTACTCAGAAATTCATTTCAAGCAACCCGAAGGCTGGGGAGATTGAGTCTTTGTTGAAT 1438
|||||||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||
Sbjct 1393 GCTACTCAGAAACTCATTTCTAGCAACCCCAAGGCTGAAGAGATTGAGTCTTTGTTGAAT 1452
Query 1439 CCGGGAACTGTTCTCGATGCTTTCTTGTCTCTGGAGCCATATGATTATCAGCAGAGAGCT 1498
||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 CCGAGAACTGTTCTTGACGCTTTCTTGTCTCTGGAGCCATATGATTATCAGCAGAGAGCC 1512
Query 1499 GGAATCCGTCTAGTTGCTAGAAAGCTTGTTATACATTAGTAAACCTTACTCAATAGC--- 1555
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1513 GGAATCCGTCTAGTTGCTAGAAAGCTTGTTATACATTAGTGGACCTTACTCAATAGCACC 1572
Query 1556 --------T-AAAGAAATCAGAGTTTAGTGGACTGTAGAGATTTATTTATGTAGTCATGA 1606
| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 ACAGAGAATTAAAGAAATCAGAGTTTAGTGGACTGTAGAGATTTATTTATGTAGTCATGA 1632
Query 1607 AAGAAACACACAACTGCTGTTCCTGACAGTAGATATATAGCTGATTCTGTTCTTAGTTT 1665
|||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1633 AAGAAACACAGAACTGTTGTTCCTGACAGTAGATATACAGCTGATTATGTTCTTAGTTT 1691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82278693255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5