BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496303
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61440.1 | Symbols: ACHT5 | atypical CYS HIS rich thioredox... 1308 0.0
> AT5G61440.1 | Symbols: ACHT5 | atypical CYS HIS rich thioredoxin
5 | chr5:24707500-24708893 FORWARD LENGTH=1105
Length=1105
Score = 1308 bits (708), Expect = 0.0
Identities = 841/905 (93%), Gaps = 9/905 (1%)
Strand=Plus/Plus
Query 1 TTGATATCGAGAGGTCAATAAAGTGATAAACTTTTTGTGA-TTTTT-CTCATTCAAAATC 58
||||| ||||||||||||||||||||| | |||||||||| ||||| |||||||||||||
Sbjct 23 TTGATGTCGAGAGGTCAATAAAGTGATGAGCTTTTTGTGATTTTTTCCTCATTCAAAATC 82
Query 59 TTTGCACATTTTCAATTTCCTCCAATCTCAAATTTCTGAGTCTTTCTTGCTTCGCTTT-C 117
||||||| |||||| | |||| ||||||||||||||||||||||||||| ||| |||| |
Sbjct 83 TTTGCACTTTTTCACTCTCCTTCAATCTCAAATTTCTGAGTCTTTCTTGGTTCACTTTCC 142
Query 118 TTAAAACAAGATTTGACATGGATGCAATTTCATCTCTTGGAACCAATCATGTTCTTTGTG 177
|| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 143 TT-AAACACGATTTGACATGGATGCAATTTCATCTCTTGGAACCAATTGTGTTCTTTCTG 201
Query 178 GGTTTTCTCCATTTTCTCAGGAGAATCCATCAAAATCGAAACTTTGTCCGGTTATGAGTC 237
|| ||||||||||||| || ||||||| ||||||||||||||||| |||| |||||||||
Sbjct 202 GGGTTTCTCCATTTTCACAAGAGAATCAATCAAAATCGAAACTTTCTCCGTTTATGAGTC 261
Query 238 TCGATTTGAAGGAACATCCCATGGTTTCAACAGATTTCACCAACCAAACCTTAACCGCTT 297
| ||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 262 TTGATTTGAAGGAACATCCAATGGCTTCAGCAGATTTCACCAACCAAACCTTAACCGCTT 321
Query 298 TCTCTTCTTCCTCTGTGACTCCTTTTCAGGCAAAGACATCATCAATTGGTAAGAGTAGAG 357
||||||||||||||| | ||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 322 TCTCTTCTTCCTCTGCGTCTCCTTTTCAGGCAAAGACATCATCGATTGGTATGAGTAGAG 381
Query 358 GAATGAGATGGTGGGAAAAGTCAACGAATCACAACATGTTAGAGATTCAATCTGCAAATC 417
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 382 GAATGAGATGGTGGGAGAAGTCAACAAATCACAACATGTTAGAGATTCAATCTGCCAATC 441
Query 418 ATCTAGTTGACTCTTTGTTAAATGCTGGAGATAGATTGGTTGTTCTTGATTTCTACTCTC 477
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 442 ATCTTGTTGACTCTTTGTTAAACGCTGGAGATAGATTGGTTGTTCTTGATTTCTACTCTC 501
Query 478 CTGCTTGTGGTGGCTGCAAATCTCTCCACCCAAAGGTATGTCAATTGGCTGAATCAAACC 537
||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||
Sbjct 502 CTGGTTGTGGTGGCTGCAAATCTCTCCACCCAAAGATATGTCAATTGGCAGAAACAAACC 561
Query 538 CAAATGTCATGTTTCTGAAAGTGAATCAAGAAGAGCTAAGAACAATGTGTCATGGTCTTA 597
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 562 CAAATGTGATGTTTCTGAAAGTGAATCAAGAAGAGCTTAGAACAATGTGTCATGGTCTAA 621
Query 598 ACGTTCATGTGCTTCCTTTCTTTAAGTTGTATAGAGGAGCAGAGGGTAAAGTCTGTAGCT 657
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 622 ACGTTCATGTGCTGCCTTTCTTTAAGTTCTATAGAGGAGCAGAGGGTAAAGTCTGTAGCT 681
Query 658 TCAGCTGCACTATTGCAACCATCAATAAGTTCAAGAAAGCGTTGGATAAGCACGGTAGCG 717
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 682 TCAGCTGCACTATTGCAACTATCAATAAGTTCAAGAAAGCGTTGGATAAGCACGGTAGTG 741
Query 718 AACGATGCAGCCTCGGGCCA-GCAAAGGGATTAAACGAGAAAGAACTTGCGGCTTTGGCA 776
|| |||||||||||||| | |||||||||||| ||||||| ||||| ||||||||||||
Sbjct 742 AAAGATGCAGCCTCGGGG-ATGCAAAGGGATTAGACGAGAAGGAACTCGCGGCTTTGGCA 800
Query 777 TCGGTTGGGGAACTGAAAATGAATTCTTTAACATTGCATCAAACTAGCATCGTTGGTTAT 836
|||||||| |||||||||||||||||||||||| |||||||| |||||| | ||||||||
Sbjct 801 TCGGTTGGTGAACTGAAAATGAATTCTTTAACAATGCATCAAGCTAGCAACATTGGTTAT 860
Query 837 AAAACAGAGGAGCAATATCAAACGATGGTGCTATAAAAGAGATGA-TTTTT-CATTAGGG 894
|||||||||||||||||||||||||||||| |||||| ||||||| ||||| ||||| ||
Sbjct 861 AAAACAGAGGAGCAATATCAAACGATGGTGTTATAAA-GAGATGACTTTTTTCATTAAGG 919
Query 895 TTCTT 899
|||||
Sbjct 920 TTCTT 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43904644478
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5