BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496304
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61450.1 | Symbols: | P-loop containing nucleoside triphosp... 2268 0.0
> AT5G61450.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:24710033-24712945
REVERSE LENGTH=1614
Length=1614
Score = 2268 bits (1228), Expect = 0.0
Identities = 1434/1530 (94%), Gaps = 27/1530 (2%)
Strand=Plus/Plus
Query 1 AATTTGGAAGATGAAGGACAGAGAGGAATCATCATCGTCTAGTTCTTCAATGacaacaac 60
||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 55 AATTT-GAAGATGAAGGACAGAGAGGAATCATCATCGTCTTCTTCTTCAATG---ACAAC 110
Query 61 aacaacaaacaacCCTAATGGAATCATCAACAACGGCGAACACGAACCTCGAGATATCAA 120
| || ||| || |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 111 -A-AA-AAA-AA--CTAATGGAATAATCAACAACGGCGAACACGAACCTCGAGATATCAA 164
Query 121 CATCCGATCATTCTCTTCTGTTCCTTCTTCTCCTCGTAACGCTTCTTCCAAATACGATTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 CATCCGATCATTCTCTTCTGTTCCTTCTTCTCCTCGTAACGCTTCTTCCAAATACGATTT 224
Query 181 CGTCAAGGTGAAGGTATGGCTTGGAGACAACGCCGATCACTACTATGTTCTGTCTCGCTT 240
||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 225 CGTCAAGGTCAAAGTATGGCTTGGAGACAACGCAGATCACTACTATGTTCTGTCTCGATT 284
Query 241 CTTAGTTTGTAGAATGTTAACTGTTACTAAGATCCCAAATCATGAGGCTATAAAGATTTC 300
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 285 CTTAGTCTGTAGAATGTTAACTGTTACTAAGATCCCAAATCATGAAGCTATAAAGATTTC 344
Query 301 TCTTGAACTCAAGAAGCTTCTAATTGACAACAGTCTTCTTGATGTCTCTCAGTCTGATTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TCTTGAACTCAAGAAGCTTCTAATTGACAACAGTCTTCTTGATGTCTCTCAGTCTGATTT 404
Query 361 GGAAACCAATTTGTTTAAGCTAATGGAGCGACGTGGTTATGGAGAAGAATACATAAATCG 420
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 405 GGAAACCAATTTGTTTAAGCTAATGGAGCGACGTGGTTATGGAGAAGAGTACATTAATCG 464
Query 421 TTACAACATGATGACAAAATTTCATCATCAAAGAGTACCTCTTGTCATACTTGTTTGCGG 480
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 465 TTATAACATGATGACAAAATTTCATCATCAAAGAGTACCTCTTGTCATACTCGTTTGCGG 524
Query 481 AACAGCTTGTGTTGGCAAGTCCACAATTGCTACACAACTTGCTCAGAGACTAAACTTGCC 540
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 525 AACAGCTTGTGTTGGCAAGTCCACTATAGCTACACAACTTGCTCAGAGACTTAACTTGCC 584
Query 541 TAACGTCTTACAAACAGATATGGTATATGAGCTGCTTCGAACAGCAACTGATGCTCCGTT 600
||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 585 AAACGTTTTACAAACAGACATGGTTTATGAGCTGCTTCGAACAGCAACTGATGCTCCGTT 644
Query 601 AACATCAACCCCTGTATGGACTCGAGAATTCGGCTCATCAGAAGAGTTGATTACTGAATT 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GACATCAACCCCTGTATGGACTCGAGAATTCGGCTCATCAGAAGAGTTGATTACTGAATT 704
Query 661 CTGTAGAGAATGCAGAATTGTTCGAAAAGGACTTGGTGGTGATTTAAAGAAAGCAATGAA 720
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 705 CTGTAGAGAATGCAGAATTGTTCGGAAAGGACTTGGTGGTGATTTGAAGAAAGCAATGAA 764
Query 721 AGATGGGAAACCCATTATAATTGAGGGAAGACATTTAGATCCAAGCATATACTTAATGAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 AGATGGGAAACCCATTATAATTGAGGGAAGACATTTAGATCCAAGCATATACTTAATGAA 824
Query 781 TGATGAGAACAAAACTCCATCAAATGATACCGAGAAGAACAGTAGCGAAACAAACTCTTC 840
|||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||
Sbjct 825 TGATGAGAACAAAACTCCATCAAATGATCCCGAGAAGAGCAGCAGCGAAACAAACTCTTC 884
Query 841 -AAGAGAGT-TAACCTCGGACAAGAATCTCGAGGCAGGGTCTTCAAACATGAAAGAAACC 898
|| ||| | ||||||||||||| |||| ||||||| | |||||||||| ||||||||||
Sbjct 885 GAA-AGA-TCTAACCTCGGACAAAAATCCCGAGGCAAGTTCTTCAAACACGAAAGAAACC 942
Query 899 GACAATAGTGCTGTGAAACCCGATTCTCAGGATGAAGCCGCGGCATCTGTAAAAGCTATC 958
||||||||||||||||||||| ||||||| || ||||| | |||||||||| |||| | |
Sbjct 943 GACAATAGTGCTGTGAAACCCCATTCTCATGAGGAAGCTGTGGCATCTGTAGAAGCGAAC 1002
Query 959 GACCTATCAGAAAAAGTTACACAATGTAAAATCAACCCTGAAAGTTCAAAAGATGCTGAG 1018
|||| |||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 1003 AACCTCTCAGAAAAAGTTACACAATGTACAATCGACGCTGAAAGTTCAAAAGATGCTGAA 1062
Query 1019 AAGAAAAGCAAATCTGCAGATAGAAGTGGAAAGACGAAATCTGGCCCCGAACCAATAGTC 1078
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1063 AAGAAAAGCAAATCTGCAGATGGAAGTGGAAAGACGAAATCTGGCCCTGAACCAATAGTC 1122
Query 1079 ATATCTATAGTTTTAAAGATGGCTGAATTCGATCATAAGGCTTTGCTAGAGGAGTGGATC 1138
|||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1123 ATATCTATTGTGTTAAAGATGTCTGAATTCGATCATAAGGCTTTGCTAGAGGAGTGGATC 1182
Query 1139 TCTTCCCGTAAATCTGGAGAGAAATATAC-ATCTAAGGAGAAAGATAGACTAATTACAAA 1197
|||||||||| |||||||||||||||||| | |||||||||||||||||||||| |||||
Sbjct 1183 TCTTCCCGTACATCTGGAGAGAAATATACCA-CTAAGGAGAAAGATAGACTAATAACAAA 1241
Query 1198 CCTAAAGACCATTGAAGACTACCTTTGTTCCTTCAATTCACAGGGAGTGACTGTTGTAAA 1257
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1242 CCTAAAGACCATTGAAGACTACCTTTGTTCCTTTAATTCACAGGGGGTGACTGTTGTAAA 1301
Query 1258 TATATCGGCCACCACATTCCCGCAGACACTAGATTCGCTTCACAACTATCTTCTTCAGCG 1317
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1302 TATATCGGCCACCACATTCCCACAGACACTAGATTGGCTTCACAACTATCTTCTTCAGCG 1361
Query 1318 TATTGAGGAAGGGATTCGATCATCAGAGAATGAGGCGCCAAAGTGA--CGCATGCAGAAG 1375
|||||||||||||||||||||||||||||| ||||| || |||||| | |||||| |||
Sbjct 1362 TATTGAGGAAGGGATTCGATCATCAGAGAACGAGGCTCCGAAGTGAGACACATGCAAAAG 1421
Query 1376 AAGTCTTAAGGAGGCTAGAGTCATCTTCTCTAAATGCCTCAGAAACTATATAATAGTTAA 1435
||||||||||||||||| ||||| ||||| || |||||||||||||| | |||||||
Sbjct 1422 AAGTCTTAAGGAGGCTAAAGTCACCTTCTATA----CCTCAGAAACTATA-A-TAGTTAA 1475
Query 1436 AACAATTGAGATTAGCCAGCTT-TGTATTCTATAGTGTCAGCTGTCACTCGCTATCAAAA 1494
|||||||||||||||| || || |||||||||||||||||||| ||||||| ||| ||||
Sbjct 1476 AACAATTGAGATTAGCGAG-TTATGTATTCTATAGTGTCAGCTATCACTCGTTATAAAAA 1534
Query 1495 A-CAAAGAGAAGTTCTTGCATGAACTAATA 1523
| ||||||||| ||||||||||||||||||
Sbjct 1535 AACAAAGAGAATTTCTTGCATGAACTAATA 1564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75150215865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5