BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496306
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61470.1 | Symbols: | C2H2-like zinc finger protein | chr5:... 1229 0.0
> AT5G61470.1 | Symbols: | C2H2-like zinc finger protein | chr5:24722870-24723983
FORWARD LENGTH=1114
Length=1114
Score = 1229 bits (665), Expect = 0.0
Identities = 977/1119 (87%), Gaps = 56/1119 (5%)
Strand=Plus/Plus
Query 1 ATGTATTCACTTCTCAAGGCAACAAAAACCTGTCAGATTTGCAAGAGATCATTTTCAAAC 60
|||||||||||||||||| |||||||| ||||||| | ||||||| |||||||||||||
Sbjct 1 ATGTATTCACTTCTCAAGAAAACAAAAATCTGTCAGGTGTGCAAGAAATCATTTTCAAAC 60
Query 61 GGGAAAGCTCTTGGTGGTCACATGAGGGCTCACACTCGGAAA-CTTTCCGCCGGATCATC 119
|||||||||||||||||||||||||| ||||||||| |||| ||||| | ||||||||
Sbjct 61 GGGAAAGCTCTTGGTGGTCACATGAGAGCTCACACTTTGAAATTTTTCC-CTGGATCATC 119
Query 120 ATCGTCAACTGGCTCGGTCACTCCATCACTACGACCATGCAACAACCTTGGAGCAAGCTT 179
|| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 120 TTCATCAACTGGCTCGATCACTCCATCACTACGATCATGCAACAACCTTGGAGCAAGCTT 179
Query 180 T---AGACCTCCTGAAACAGTTCTGGTGAGATCTGTCCACACCAGTGAAGTTGTTGGTGG 236
| |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 180 TAGAAGACCTAATGAAACAGTTCTGGCGAGATTTGTCCACACCAGTGAAGTTGTTGGTGG 239
Query 237 TCCAAAGCCAGATTTAAACACAGAAGGTGAGCAGCAAATAACTGCCAAGAGAAAGATAGT 296
||||||||||||| |||||| ||||| |||||| | || ||||| ||||| ||| | | |
Sbjct 240 TCCAAAGCCAGATCTAAACAAAGAAGCTGAGCAACGAACAACTGTCAAGA-AAA-AGA-T 296
Query 297 CGTCGTGGATCTGGAAGAGGAAGATTCGACAGAGTCTGAAAGCGATATAACTATTGAAGA 356
|||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 297 CGTCGTGGATTTGGAAGAGGAAAATTCGATAGAGTCTGAAAGCGATATAACTATTGAAGA 356
Query 357 AAGTGCTTTATGTCTTTTAAAAATGAAG-A-G-CGACCCGACAGAATATTTTCAGAATCC 413
||||||||||||||||||| |||||||| | | | || | |||||||| |||||||||
Sbjct 357 AAGTGCTTTATGTCTTTTACAAATGAAGGATGACAACATGTCAGAATATCTTCAGAATCT 416
Query 414 AAAATCGATTGATAGTTTGGTATCAACTCGaaaaaaaaaaGATACTGAAAAGC-ATATCG 472
|||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 417 GAAATCGATTGATAGTTTGGTATCAACTCGAAAAAGAAAAGATACTGAAAA-CTATATCG 475
Query 473 TAATagattctgatga---t---ga-g-tacgt--tgctga--a-gatg---aagatgaa 516
||||||||||||||| | || | || || || ||| | | || ||||||||
Sbjct 476 AAATAGATTCTGATGAAAATCACGAAGATA-GTGATGATGAGTACGTTGTTGAAGATGAA 534
Query 517 gatgaagacgatgaagatgaagatATTAAGTTTCTCACTTCAGATATGGGAGACCTAACA 576
||||||||| |||||||||| ||| |||||| ||||||||||||| ||| | |||||| |
Sbjct 535 GATGAAGACAATGAAGATGACGATGTTAAGTCTCTCACTTCAGATGTGGAAAACCTAATA 594
Query 577 GGAGACAGCGATGAAGATGAAGACGATTATGATGATGAAAACGCATATTACGGTGGGAAA 636
|||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |||
Sbjct 595 GGAGACAGCGATGAAGATGATGATGATTATGGTGATGAAAACGCATATTACGGTGGAAAA 654
Query 637 GAG-AGAAGGGGTAAGAAACAAAGCAAATATACGTGTGATATTTGTGGACAAGTTTTACA 695
|| | |||||||||||||||||| |||||||||||||||| ||||||| |||||||||
Sbjct 655 -AGGAAAAGGGGTAAGAAACAAAGTAAATATACGTGTGATACTTGTGGAAAAGTTTTACG 713
Query 696 TTCGTATCAAGCATTAGGCGGTCATCGAACTAGCCACAGAA-ACAAACGATTGAAGATTT 754
||||||||| |||||||| ||||||||||| ||||||| || |||| |||||||||||||
Sbjct 714 TTCGTATCAGGCATTAGGTGGTCATCGAACGAGCCACA-AATACAAGCGATTGAAGATTT 772
Query 755 CCGACAAGAATCATTCCGCCGAAGATGGGCCAGTGGTTCGACGA-AGCTACGAGTGTCAA 813
||||||||||| ||| || |||||||||||| | ||||||||| | ||||||||||||
Sbjct 773 CCGACAAGAATTATTTCGGGGAAGATGGGCCAATAGTTCGACGACAA-TACGAGTGTCAA 831
Query 814 ATTTGTAACAGAGTGTTTGCATCTGGTCAAGCACTTGGTGGTCACAAAAAGATTCACTAT 873
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 ATTTGTAACAGAATGTTTGCATCTGGTCAAGCACTTGGTGGTCACAAAAAGATTCACTAT 891
Query 874 ACGTTCC-ATGCTCCACCCAAGTAACTTGTCGACTTCCACCAAGTGACCATATAAACTAT 932
| ||||| | |||||| |||||||||||||||| |||||||||||||||||| || ||||
Sbjct 892 ATGTTCCTA-GCTCCAGCCAAGTAACTTGTCGATTTCCACCAAGTGACCATAGAATCTAT 950
Query 933 GAAGCGTA----GATTTGGGTGACTA-TTCCATTCCGATAAACAAATAATAAAA-----C 982
|||||||| |||||||||||||| || | |||||||||||||||||| |
Sbjct 951 GAAGCGTACCTAGATTTGGGTGACTAGTTG-A----GATAAACAAATAATAAAAAGAAAC 1005
Query 983 ATGCTCTCTCTTTTCTTTTTGTTTTCCGACGAATAAAACATGTTCTCTATTTTAATGTTG 1042
||||| | |||||||||| ||||||||||| ||||||||||||||| | |||| ||||||
Sbjct 1006 ATGCT-T-TCTTTTCTTTCTGTTTTCCGACTAATAAAACATGTTCTATGTTTTTATGTTG 1063
Query 1043 TTGTACCCTTTTTAAGTTTATTTTCCAATATTAATAAAA 1081
|| |||||||||||||||||||||| | || |||||||
Sbjct 1064 TTA-ACCCTTTTTAAGTTTATTTTCCTACATCAATAAAA 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52961574975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5