BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496307
Length=3114
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61480.1 | Symbols: PXY | Leucine-rich repeat protein kinase... 4724 0.0
> AT5G61480.1 | Symbols: PXY | Leucine-rich repeat protein kinase
family protein | chr5:24724541-24727842 REVERSE LENGTH=3126
Length=3126
Score = 4724 bits (2558), Expect = 0.0
Identities = 2909/3082 (94%), Gaps = 10/3082 (0%)
Strand=Plus/Plus
Query 39 tctccttcttcttcttcctttctttgctttcaattctttAGCCCTCAAGGTTTCACCTCA 98
|||||||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct 45 TCTCCTTCTTCTACTTCCTTTCTTTGCTTTCAATTCCTTAGCTCTCAAGTTTTCACCTCA 104
Query 99 ACTTTTGTCTCTCATTTCCCTCAAAACATCTCTCTCTGGCCCTCCCTCTGCCTTTCAAGA 158
||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 105 ACTCTTGTCTCTCCTTTCCCTTAAAACATCTCTCTCTGGCCCTCCCTCTGCCTTTCAAGA 164
Query 159 TTGGAAAGTCCCGGTTGATGGTCAAAACGTCGCCGTTTGGTGTTCTTGGTCCGGTGTAGT 218
||||||||||| ||| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 165 CTGGAAAGTCCCCGTTAACGGTCAAAACGACGCCGTTTGGTGTTCTTGGTCCGGTGTAGT 224
Query 219 CTGTGATAATGTAACGGCTCAAGTCATTTCCCTCGACCTCTCTCACCGGAACCTCTCTGG 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 CTGTGATAATGTAACGGCTCAAGTCATTTCCCTCGACCTCTCTCACCGGAACCTCTCTGG 284
Query 279 TCGTATTCCTATACAGATTCGTTACTTGTCGAGCTTACTCTACTTGAATCTCAGTGGGAA 338
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 285 TCGTATTCCTATACAGATTCGTTACTTGTCGAGCTTACTCTACTTAAATCTCAGTGGGAA 344
Query 339 TTCTTTGGAAGGTTCGTTTCCGACTTCTATCTTTGATCTCACCAAGCTCACTACCCTCGA 398
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 345 TTCTTTGGAAGGTTCGTTTCCAACTTCTATCTTTGATCTCACCAAGCTCACTACCCTCGA 404
Query 399 CATCAGCCATAACTCGTTCGACTCGAGTTTCCCTCCCGGAATCTCCAAGCTCAAGTTCTT 458
|||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 405 CATCAGCCGTAACTCGTTCGACTCGAGTTTTCCTCCCGGAATCTCCAAGCTTAAGTTCTT 464
Query 459 AAAAGTCTTCAATGCGTTCAGCAACAACTTCGAAGGTCTATTGCCTGGTGACGTGTCTCG 518
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 465 AAAAGTCTTCAATGCGTTCAGCAACAACTTCGAAGGTCTATTACCTAGTGACGTGTCTCG 524
Query 519 TCTTCGTTTCTTGGAAGAGCTTAACTTTGGTGGGAGTTACTTTGAAGGAGAAATTCCTGC 578
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 525 TCTTCGTTTCTTGGAAGAGCTTAACTTTGGTGGAAGTTACTTTGAAGGAGAGATTCCAGC 584
Query 579 AGCTTATGGTGGTTTACAGAGATTGAAGTTTATTCATTTAGCCGGAAATGTTCTTGGAGG 638
|||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 585 AGCTTACGGTGGTTTACAGAGATTGAAGTTTATTCATTTAGCTGGAAATGTCCTCGGAGG 644
Query 639 TGAACTACCTCCGAGATTAGGGCTCTTACCAGAGCTCCAACACATCGAGATCGGTTATAA 698
| |||||||||| |||||||| |||||| |||||||||||||||| || |||||||||||
Sbjct 645 TAAACTACCTCCTAGATTAGGACTCTTAACAGAGCTCCAACACATGGAAATCGGTTATAA 704
Query 699 TCACTTCACCGGAAGCATACCCTCGGAGTTTTCGTTACTCTCGGATCTTAAGTACTTTGA 758
|||||||| ||||| |||||| ||||||||| | |||||||| |||| |||||||||||
Sbjct 705 TCACTTCAACGGAAACATACCTTCGGAGTTTGCCTTACTCTCAAATCTCAAGTACTTTGA 764
Query 759 CGTTTCCAATTGCAGCCTCTCTGGTTCTCTGCCTCAAGAACTCGGAAATCTCACAAAGCT 818
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 765 CGTTTCCAATTGCAGCCTCTCTGGTTCTCTGCCTCAAGAACTCGGGAATCTCTCAAACCT 824
Query 819 CGAGACTTTGCTTCTTTTCGATAACGGTTTCACCGGCGAAATTCCAGAGAGTTATAGCAA 878
|||||||| |||| ||| | |||||||||||||| ||||| |||||||||||||||||
Sbjct 825 AGAGACTTTATTTCTATTCCAAAACGGTTTCACCGGTGAAATCCCAGAGAGTTATAGCAA 884
Query 879 CTTGAAAGCCCTCAAG-TTACTCGATTTTTCGAGTAATCAACTTTCTGGTAGTATCCCAT 937
||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 885 CTTGAAATCCCTCAAGCTT-CTCGATTTTTCGAGTAATCAGCTTTCTGGTAGTATCCCAT 943
Query 938 CAGGCTTCTCAAACTTGAAGAACCTCACATGGCTAAGCTTAATCAGCAATAACCTCTCAG 997
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 CAGGCTTCTCGACCTTGAAGAACCTCACATGGCTAAGCTTAATCAGCAATAACCTCTCAG 1003
Query 998 GTGAAGTACCTGAAGGAATCGGTGAACTCCCTGAGCTTACTACATTGTCTCTATGGAACA 1057
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1004 GTGAAGTACCTGAAGGAATCGGTGAACTCCCTGAGCTTACTACATTGTTTCTATGGAACA 1063
Query 1058 ATAACTTTACCGGAGTTTTGCCACAAAAGCTTGGATCAAACGGTAACCTTGTGACAATGG 1117
||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct 1064 ATAACTTCACCGGAGTTTTGCCACACAAGCTTGGATCAAACGGTAAACTTGAGACAATGG 1123
Query 1118 ACGTCTCCAACAATTCATTCACCGGAACAATCCCTTCTTCTCTCTGCCATGGAAACAAGT 1177
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 ACGTCTCTAACAATTCATTCACCGGAACAATCCCTTCTTCTCTCTGCCATGGAAACAAGC 1183
Query 1178 TATACAAGCTCATCCTCTTCTCCAACATGTTTGAAGGTGAGTTACCAAAGAGCTTGACTC 1237
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1184 TATACAAACTCATCCTCTTCTCCAACATGTTTGAAGGTGAGCTACCAAAGAGCTTGACTC 1243
Query 1238 GTTGCGATTCTCTATGGCGGTTTCGGAGTCAAAACAATCGATTAAACGGCACAATTCCCA 1297
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1244 GTTGCGAATCTCTATGGCGGTTTCGGAGTCAAAACAATCGATTAAACGGCACAATTCCGA 1303
Query 1298 CCGGATTCGGCTCTCTACGCAATCTCACTTTCGTCGATTTGAGCAACAACAGATTCACAG 1357
|||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||| |
Sbjct 1304 TCGGATTCGGCTCTCTACGTAACCTCACTTTCGTTGATTTAAGCAACAACAGATTCACCG 1363
Query 1358 ATCAAATTCCGGCGGATTTCGCCACCGCACCTGTTCTTCAGTACTTAAATCTCTCCACCA 1417
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 1364 ATCAAATTCCGGCGGATTTCGCCACCGCTCCTGTTCTTCAGTACTTGAATCTCTCAACCA 1423
Query 1418 ATTCCTTCCACAG-AAAGTTACCAGAAAACATATGGAAAGCTCCGAATCTACAGATCTTC 1476
||| ||||||||| ||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1424 ATTTCTTCCACAGGAAACT-ACCGGAAAACATATGGAAAGCTCCGAATCTACAGATCTTC 1482
Query 1477 TCAGCGAGTTTCAGCAATTTGATCGGTGAAATCCCAAATTACGTTGGATGCAAAAGCTTC 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 TCAGCGAGTTTCAGCAATTTGATCGGTGAAATCCCAAATTACGTTGGATGCAAAAGCTTC 1542
Query 1537 TACAGGATTGAGCTACAAGGAAACTCACTCAACGGAACGATTCCATGGGACATCGGACAT 1596
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 TACAGGATTGAACTACAAGGAAACTCACTCAACGGAACGATTCCATGGGACATCGGACAT 1602
Query 1597 TGTGAGAAGCTTCTCTGTTTGAATCTCAGCCAAAATCATCTCTCCGGTATCATTCCATGG 1656
|| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1603 TGCGAGAAGCTTCTCTGTTTGAATCTCAGCCAAAATCATCTCAACGGAATCATTCCATGG 1662
Query 1657 GAGATTTCCACTCTTCCGTCGATCGCCGACGTAGATCTTTCTCACAATCTCTTAACCGGA 1716
|||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1663 GAGATTTCAACTCTTCCGTCAATCGCCGACGTAGATCTTTCTCATAATCTCTTAACCGGA 1722
Query 1717 ACACTCCCTTCCGATTTCGGAAGCTCCAAGACGATCACAACCTTCAACGTTTCGTATAAT 1776
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1723 ACAATCCCTTCCGATTTCGGAAGCTCTAAGACGATCACAACCTTCAACGTTTCGTATAAT 1782
Query 1777 CAGCTAATCGGTCCAATTCCAAGTGGTTCGCTAGCGCATCTGAATCCGTCGTTTTTCGCC 1836
|||||||||||||| |||||||||||||| | || ||||||||||||||||| ||| ||
Sbjct 1783 CAGCTAATCGGTCCGATTCCAAGTGGTTCTTTCGCTCATCTGAATCCGTCGTTCTTCTCC 1842
Query 1837 TCAAACGAAGGTCTCTGCGGAGATGTCGTCGGAAAACCTTGCAATTCCGATAGGTTTAAC 1896
||||||||||| ||||| |||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1843 TCAAACGAAGGACTCTGTGGAGATCTCGTCGGAAAACCTTGCAATTCTGATAGGTTTAAC 1902
Query 1897 GCCGGAGATTCAGACCTCGACGGTCATCATAACGAGGAACGACCGAAGAAAACCGCCGGA 1956
|||||| || |||| | |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 1903 GCCGGAAATGCAGATATAGACGGTCATCATAAAGAGGAACGACCTAAGAAAACAGCCGGA 1962
Query 1957 GCTATTGTTTGGATTTTGGCGGCGGCGATTGGGGTTGGATTCTTCGTCCTTGTAGCCGCT 2016
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1963 GCTATTGTTTGGATATTGGCGGCGGCGATTGGGGTTGGATTCTTCGTCCTTGTAGCCGCC 2022
Query 2017 ACTCGATGTTTCCAGAAAAGCTACGGAAACAGAGTCGACGGTGGTGGAAGAAACGGCGGA 2076
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2023 ACTAGATGCTTCCAGAAAAGCTACGGAAACAGAGTCGACGGTGGTGGAAGAAACGGCGGA 2082
Query 2077 GATATTGGACCGTGGAAGCTAACCGCGTTTCAGAGGCTAAATTTCACGGCGGATGATGTG 2136
||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||||
Sbjct 2083 GATATAGGACCGTGGAAGCTAACGGCTTTTCAGAGACTAAACTTCACGGCGGATGATGTG 2142
Query 2137 GTGGAGTGTCTCTCAAGGACAGATAACATCCTCGGAATGGGATCAACCGGAACAGTGTAC 2196
|| ||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 2143 GTTGAGTGTCTCTCAAAGACTGATAACATCCTCGGAATGGGATCAACAGGAACAGTGTAC 2202
Query 2197 AAGGCGGAGATGCCTAACGGAGAAATAATCGCCGTGaaaaaactctggggaaaaaacaaa 2256
|| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 2203 AAAGCAGAGATGCCTAATGGAGAAATAATCGCCGTGAAAAAACTTTGGGGAAAAAACAAA 2262
Query 2257 gaaaacggcaaaaTCCGGCGGCGGAAGAGCGGCGTATTGGCGGAGGTAGATGTTCTAGGG 2316
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2263 GAGAACGGCAAAATCCGGCGGCGGAAGAGCGGCGTATTGGCGGAGGTTGATGTTCTAGGG 2322
Query 2317 AATGTACGTCACCGGAACATTGTTCGTCTCCTTGGATGCTGCTCGAATCGAGATTGTACG 2376
|| ||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||
Sbjct 2323 AACGTACGTCACCGGAACATCGTTCGTCTCCTTGGATGTTGCACGAATCGAGATTGCACG 2382
Query 2377 ATGCTTCTATACGAATACATGCCTAATGGAAGCTTAGACGATCTTCTTCACGGTGGCGAT 2436
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2383 ATGCTTTTATACGAATACATGCCTAATGGAAGCTTAGACGATCTTCTTCACGGTGGGGAT 2442
Query 2437 AAGACAATGAACGCGGCGGCGGAATGGACGGCGTTGTATCAAATCGCGATCGGAATTGCT 2496
||||| |||| ||||||||||||||||||||| |||||||| |||||||| ||| | |||
Sbjct 2443 AAGACGATGACCGCGGCGGCGGAATGGACGGCTTTGTATCAGATCGCGATTGGAGTGGCT 2502
Query 2497 CAAGGGATCTGTTATCTCCACCATGATTGTGATCCGGTGATCGTACACCGTGACCTGAAA 2556
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2503 CAAGGGATCTGTTATCTCCACCATGATTGTGATCCGGTGATTGTACACCGTGACCTGAAA 2562
Query 2557 CCTAGCAATATCCTCCTCGACGCTGATTTCGAGGCGCGGGTGGCGGATTTCGGCGTCGCG 2616
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 2563 CCTAGCAATATCCTCCTCGACGCCGATTTCGAGGCGCGTGTGGCGGACTTCGGCGTCGCG 2622
Query 2617 AAGCTGATTCAAACCGACGAATCCATGTCCGTCGTCGCCGGATCGTACGGTTACATTGCA 2676
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2623 AAGCTTATTCAAACCGACGAATCCATGTCCGTCGTCGCCGGTTCGTACGGTTACATTGCA 2682
Query 2677 CCAGAGTATGCTTACACACTACAAGTGGATAAAAAGAGTGATATCTATAGCTATGGAGTG 2736
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2683 CCAGAATATGCTTACACTTTACAAGTGGATAAAAAGAGTGATATCTATAGCTATGGAGTG 2742
Query 2737 ATATTGTTAGAAATTATCACCGGGAAAAGATCGGTGGAACCGGAATTTGGTGAAGGTAAT 2796
|| || ||||| || |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2743 ATTTTATTAGAGATAATCACCGGAAAAAGATCGGTGGAACCGGAATTTGGAGAAGGTAAC 2802
Query 2797 AGTATCGTGGATTGGGTTAGATCAAAGTTGAAGACAAAAGAAGATGTAGAAGAAGTTCTA 2856
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2803 AGTATCGTGGATTGGGTTAGATCAAAGTTGAAGACGAAAGAAGATGTAGAAGAAGTTCTA 2862
Query 2857 GACAAAAGCATGGGTAGGTCGTGTAGTCTTATAAGAGAAGAGATGAAACAAATGTTGAGA 2916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2863 GACAAAAGCATGGGTAGGTCGTGTAGTCTTATAAGAGAAGAGATGAAACAAATGTTGAGA 2922
Query 2917 ATTGCATTGTTATGTACAAGCCGGAATCCGACAGACAGACCGCCGATGAGAGATGTGTTG 2976
||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2923 ATTGCGTTGTTGTGTACAAGCCGGAGTCCGACAGACAGACCGCCGATGAGAGATGTGTTG 2982
Query 2977 TTGATTCTTCAAGAGGCAAAGCCAAAGAGGAAGACTGTAGGGGATAATGTGATCGTCGTT 3036
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2983 TTGATTCTTCAAGAGGCAAAGCCAAAGAGGAAGACAGTAGGGGATAATGTGATCGTCGTT 3042
Query 3037 GGTGATGTTAATGATGTCAATTTTGAAGATGTTTGTAGTGGTG--GT-GGT---GATGTT 3090
||||||||||||||||||||||| |||||||||||||||| || || ||| ||||||
Sbjct 3043 GGTGATGTTAATGATGTCAATTTCGAAGATGTTTGTAGTGTTGATGTTGGTCATGATGTT 3102
Query 3091 AAATGTCAAAGGATTGGGGTGT 3112
||||||||||||||||||||||
Sbjct 3103 AAATGTCAAAGGATTGGGGTGT 3124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 154865353041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5