BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496309
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61500.1 | Symbols: ATATG3, ATG3 | autophagy 3 (APG3) | chr5... 2222 0.0
> AT5G61500.1 | Symbols: ATATG3, ATG3 | autophagy 3 (APG3) | chr5:24733785-24736853
REVERSE LENGTH=1413
Length=1413
Score = 2222 bits (1203), Expect = 0.0
Identities = 1349/1417 (95%), Gaps = 19/1417 (1%)
Strand=Plus/Plus
Query 1 AAATTTGACGGAATCTAT---A-AA---TCTGCTTAGGGATTAGGGTC-CGCAA--TCGA 50
|||||||||||||||||| | || ||| | |||||||||||| | | ||| || |
Sbjct 2 AAATTTGACGGAATCTATAAGATAATTTTCTCCCTAGGGATTAGGG-CTCACAATCTCAA 60
Query 51 ATCTCAAATTTTCGCCGATACGATAAATCCTTCCTCGATAT--AAACCATTGATTAGATC 108
||||| | ||| ||||||||||||| |||||||||||| |||||| ||||||||||
Sbjct 61 ATCTCTGA--TTCTTCGATACGATAAATTCTTCCTCGATATAGAAACCACTGATTAGATC 118
Query 109 CTAATTCATCG-CTAGCTCAAAAGATGGTGCTTTCACAAAAGCTTCATGAAGCATTTAAA 167
||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 119 CTAATTCGTCGCCTAGCTCAAAAGATGGTGCTTTCGCAAAAGCTTCATGAAGCATTTAAA 178
Query 168 GGAACAGTTGAGAGGATCACAGGTCCTCGTACGATCTCGGCGTTCAAGGAGAAGGGAGTT 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGAACAGTTGAGAGGATCACAGGTCCTCGTACGATCTCGGCGTTCAAGGAGAAGGGAGTT 238
Query 228 CTCAGCGTCAGCGAGTTCGTACTCGCCGGAGATAATCTCGTCTCCAAGTGTCCTACCTGG 287
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 239 CTCAGCGTCAGCGAGTTCGTACTTGCCGGAGATAATCTCGTCTCCAAGTGTCCCACCTGG 298
Query 288 TCCTGGGAATCTGGTGACCCAAGCAAAAGGAAGCCATACTTGCCCTCGGACAAACAGTTT 347
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCTTGGGAATCTGGTGACGCAAGCAAAAGGAAGCCATACTTGCCCTCGGACAAACAGTTT 358
Query 348 TTGATTACTAGAAATGTACCTTGTCTACGGAGAGCTGCATCTGTGGCAGAGGATTATGAA 407
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 359 TTGATTACTAGAAATGTACCTTGTCTACGGAGAGCTGCTTCTGTGGCAGAGGATTATGAA 418
Query 408 GCTGCTGGAGGTGAAGTGTTGGTTGATGATGAAGATAATGATGGTTGGCTGGCGACACAT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 419 GCTGCTGGAGGTGAAGTGTTGGTTGATGATGAAGATAATGATGGTTGGCTGGCTACACAT 478
Query 468 GGGAAACCGAAAGATAAAGGCAACGAAGATGAAAACTTACCATCCATGGATGCCTTGGAC 527
||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 479 GGGAAACCGAAAGATAAAGGCAAGGAAGAGGATAACTTACCATCCATGGATGCCTTGGAT 538
Query 528 ATAAACGAGAAAAATACTATCCAATCAATACCTACGTATTTTGGAGGTGAGGAGGATGAT 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATAAACGAGAAAAATACTATCCAATCAATACCTACGTATTTTGGAGGTGAGGAGGATGAT 598
Query 588 GATATTCCAGACATGGAGGAGTTTGATGAGGCTGACAATGTGGTAGAAAATGACCCGGCA 647
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 599 GATATTCCAGACATGGAGGAGTTCGATGAGGCTGACAATGTGGTAGAAAATGATCCGGCA 658
Query 648 ACTCTTCAGTCAACTTATCTTGTGGCTCATGAACCTGATGACGATAACATTCTCCGAACT 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ACTCTTCAGTCAACTTATCTTGTGGCTCATGAACCTGATGACGATAACATTCTCCGAACT 718
Query 708 CGGACATATGATCTCAGCATAACGTATGATAAGTATTACCAAACTCCTCGTGTTTGGCTG 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CGGACATATGATCTCAGCATAACGTATGATAAGTATTACCAAACTCCTCGTGTTTGGCTG 778
Query 768 ACCGGTTATGATGAGTCAAGGATGCTGCTGCAACCTGAACTTGTAATGGAGGATGTTAGC 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACCGGTTATGATGAGTCAAGGATGCTGCTGCAACCTGAACTTGTAATGGAGGATGTTAGC 838
Query 828 CAAGACCATGCTCGTAAAACGGTCACAATCGAAGATCATCCACACTTGCCTGGTAAACAT 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CAAGACCATGCTCGTAAAACGGTCACAATCGAAGATCATCCACACTTGCCTGGTAAACAT 898
Query 888 GCTTCAGTTCATCCCTGTCGGCATGGAGCTGTTATGAAGAAAATCATTGATGTGTTAATG 947
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 899 GCTTCAGTTCATCCATGTCGGCATGGAGCTGTTATGAAGAAAATCATTGATGTATTAATG 958
Query 948 TCGCGTGGAGTAGAACCTGAAGTTGACAAGTACCTCTTCCTGTTCTTGAAGTTCATGGCA 1007
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 959 TCGCGTGGAGTAGAACCTGAAGTCGACAAGTACCTCTTCCTGTTCTTGAAGTTCATGGCA 1018
Query 1008 TCAGTTATTCCAACAATTGAGTATGATTACACGATGGACTTTGATCTCGGTAGCTCAAGC 1067
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1019 TCAGTTATTCCAACAATTGAGTACGATTACACAATGGACTTTGATCTCGGTAGCTCAAGC 1078
Query 1068 ACCTAATACCAGATTTATACAAGTATGTGCTCGTGAATCCTGGAAGCAA-TCACTGGTCT 1126
|||||||| |||||||| |||||||||||||||||||||| |||| ||| | | ||||||
Sbjct 1079 ACCTAATATCAGATTTAAACAAGTATGTGCTCGTGAATCCGGGAAACAAGT-A-TGGTCT 1136
Query 1127 CATGGATGGCTGGATGGCTCTGCACTGTACATAAATCAGAGTCCTCACTTTCATTTCTCT 1186
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1137 CATGGATGGCTGGATGGCTCTGCACTGTACATAAAACAGAGTCCTCACTTTCATTTCTCT 1196
Query 1187 CCAAAAGAAACTTTAAGGTGTTGTGGTTTAATCACTCGTTTATCTAAAGTTTACGCTGAT 1246
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CCAAGATAAACTTTAAGGTGTTGTGGTTTAATCACTCGTTTATCTAAAGTTTACGCTGAT 1256
Query 1247 GAATACTAATTTGTGATGATACTCGGAAAACGGGTATTTGATCAAAACTGATTCGTTGTA 1306
||||| |||||||||| | |||| |||||||||||||||||||||||||||||| |||
Sbjct 1257 GAATAGTAATTTGTGACAAAACTCTGAAAACGGGTATTTGATCAAAACTGATTCGGTGTG 1316
Query 1307 GTTCAAAAAACAGAATGTGATTTAGTGTGTTTGGTACACTCTTGCTTTGGAGAAGTTGGG 1366
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1317 GTTCAAAAAACAGAATGTGATTTAGTGTGTTTAATACACTCTTGCTTTGGAGAAGTTGGG 1376
Query 1367 CTTAATGTTTGAAATGTCATATCACTATATTCTTATT 1403
|||||| ||| ||||| || |||||||||||||||||
Sbjct 1377 CTTAATATTTAAAATGACAAATCACTATATTCTTATT 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69126150465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5