BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496310
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61510.1 | Symbols: | GroES-like zinc-binding alcohol dehyd... 1978 0.0
> AT5G61510.1 | Symbols: | GroES-like zinc-binding alcohol dehydrogenase
family protein | chr5:24736945-24738998 REVERSE LENGTH=1383
Length=1383
Score = 1978 bits (1071), Expect = 0.0
Identities = 1200/1262 (95%), Gaps = 10/1262 (1%)
Strand=Plus/Plus
Query 24 TCATCATCAACACTCGTGTCTTCAAGCGTCTGGACATCTGTCACGTCGTCTATATCACCC 83
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 TCATCGTCATCACTCGTGTCTTCAAGCGTCTGGACATCTGTCACGTCGTCTATATCACCG 115
Query 84 AATATTCTCGAGCTTTTCACGAAATCATGTCAAAGATCTCAACTTTCGTCTAAATCCTAC 143
|||||||||||||||| ||||||||| ||||||||||||||||||||||||| || | |
Sbjct 116 AATATTCTCGAGCTTTCCACGAAATCCCGTCAAAGATCTCAACTTTCGTCTAAGTCTTGC 175
Query 144 CGATTTCTCGATTTTTTCTTTGTCTACACGCGGCACTGTGTTTGCTGTAAGAGCTCTGAG 203
||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 176 CGATTTCTCGAGTTTTTCTTTATCTACACGTGGCACTGTGTTTGCTGTAAGAGCTCTGAG 235
Query 204 TACAACAGTCGTGGTTGAAGAGTCG-CCGGAGAAGAAGAAGATGGTGAAAGGGATTAGGG 262
| ||||||| ||| ||||||||| || | |||||||||||||||||||||||||||
Sbjct 236 T---ACAGTCGCGGTAGAAGAGTCGTCC---G-AGAAGAAGATGGTGAAAGGGATTAGGG 288
Query 263 TTTACGAGCATGGCGGTCCTGAGGTTCTGAAATGGGAAGATGTGGAAGTTGGGGAACCAA 322
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 289 TTTATGAGCATGGCGGTCCTGAGGTTCTGAAATGGGAAGATGTGGAAGTAGGGGAACCAA 348
Query 323 AGGAGGGTGAGATACGAGTGAAGAATAAGGCGATCGGGCTTAACTTCATTGATGTTTACT 382
|||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 349 AGGAGGGTGAGATACGTGTGAAGAACAAGGCTATCGGGCTTAACTTTATTGATGTTTACT 408
Query 383 TCAGGAAAGGTGTTTACAAGCCAGCTTCAATGCCCTTCACACCAGGTATGGAGGCTGTTG 442
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 409 TCAGGAAAGGTGTTTACAAGCCAGCTTCTATGCCCTTCACACCAGGTATGGAGGCTGTTG 468
Query 443 GAGAGGTGGTAGCTGTTGGGTCGGGATTGACTGGCAGAATGATCGGTGATCTCGTTGCTT 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 GAGAGGTGGTAGCTGTTGGGTCGGGATTGACTGGCAGAATGATCGGTGATCTCGTTGCTT 528
Query 503 ACGCTGGAAATCCGATGGGTGCGTATGCTGAGGAACAAATTCTTCCAGCGGATAAAGTGG 562
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 529 ATGCTGGAAATCCGATGGGTGCGTATGCTGAGGAACAAATCCTTCCAGCGGATAAAGTGG 588
Query 563 TTCCTGTTCCTTCATCTATTGATCCTATCGTTGCAGCATCAATCATGCTCAAGGGTATGA 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TTCCTGTTCCTTCATCTATTGATCCTATCGTTGCAGCATCAATCATGCTCAAGGGTATGA 648
Query 623 CTGCACAGTTTCTCCTTCGCCGTTGCTTCAAGGTCGAACGTGGGCACACAATCCTTGTTC 682
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 649 CTGCACAGTTTCTCCTTCGCCGTTGCTTCAAGGTCGAACCTGGGCACACAATCCTTGTTC 708
Query 683 ATGCTGCAGCTGGTGGAGTTGGGTCTCTGTTGTGTCAATGGGCGAATGCGCTCGGAGCCA 742
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 709 ATGCTGCAGCTGGTGGAGTTGGGTCTCTGTTGTGTCAATGGGCAAATGCGCTTGGAGCCA 768
Query 743 CTGTCATTGGAACTGTCTCGACCAATGAGAAAGCGGCTCAAGCCAAAGAAGATGGATGTC 802
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 769 CTGTGATTGGAACTGTCTCGACCAATGAGAAAGCGGCTCAAGCCAAAGAAGATGGATGCC 828
Query 803 ACCATGTTATTTTGTACAAGAATGAGGATTTCGTTTCCCGGGTCAATGACATTACATCGG 862
||||||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 829 ACCATGTTATTATGTACAAGAACGAGGATTTTGTTTCCCGAGTCAATGACATTACATCGG 888
Query 863 GTAAAGGAGTTAATGTTGTTTATGACTCTGTGGGAAAAGACACCTTTAAGGGATCATTAG 922
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 889 GTAAAGGAGTAAATGTTGTTTATGACTCTGTGGGAAAAGACACCTTTAAGGGATCGTTAG 948
Query 923 CATGTTTAAAAAGCCGGGGATACATGGTGAGCTTTGGACAGTCCTCGGGATCTCCAGATC 982
||||||| || ||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 949 CATGTTTGAAGAGCCGAGGATACATGGTGAGCTTTGGACAATCCTCAGGATCTCCAGATC 1008
Query 983 CGATTCCATTATCTGATCTTGCTCCAAAATCTCTCTTCTTGACAAGACCTTCCATGATGC 1042
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1009 CGATTCCATTATCTGATCTTGCTCCAAAGTCGCTCTTCTTGACAAGACCTTCCATGATGC 1068
Query 1043 AATACAATGAAACTCGGGACGAGCTCTTGGAATGTGCAGGAGAGGTTTTCGCCAATATAA 1102
| |||||||||||||| || |||||||||||||||||||||||||||||||| ||| | |
Sbjct 1069 ATTACAATGAAACTCGAGATGAGCTCTTGGAATGTGCAGGAGAGGTTTTCGCTAATGTTA 1128
Query 1103 CATCCGGCATCTTAAAGGCTCGTGTGAATCACAAGTACCCGTTGTCTCGAGTCGCTGATG 1162
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1129 CCTCCGGCATCTTAAAGGCTCGTGTGAATCACAAGTACCCGTTGTCTCGAGTCGCTGACG 1188
Query 1163 CCCATGCAGATCTTGAGAATAGGATCACCTCTGGCTCCGTTGTGCTCTTGCCGTGAAAAC 1222
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1189 CCCACGCAGATCTTGAGAATAGGATCACCTCTGGCTCCGTTGTGCTCTTGCCATGAAAAC 1248
Query 1223 ATATACAATGATGGTAGTATCTCTTTCAATAAGGGCAATGAGATTCCTTTGTGATGGAAA 1282
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1249 ATATACAATGATGTTAGTATCT-TT-CAATAAGGGCAATGAGATTCCTTTGTGATGGAAA 1306
Query 1283 GA 1284
||
Sbjct 1307 GA 1308
Score = 60.2 bits (32), Expect = 5e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 1 AAGAAAATGGCAGCATTGACTCTTCATCATCA 32
||||||||||||||||||||||||||||||||
Sbjct 18 AAGAAAATGGCAGCATTGACTCTTCATCATCA 49
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5