BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496318
Length=2432
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61550.2 | Symbols: | U-box domain-containing protein kinas... 1943 0.0
AT2G24370.1 | Symbols: | Protein kinase protein with adenine n... 86.1 1e-15
> AT5G61550.2 | Symbols: | U-box domain-containing protein kinase
family protein | chr5:24748102-24751871 FORWARD LENGTH=2715
Length=2715
Score = 1943 bits (1052), Expect = 0.0
Identities = 1170/1228 (95%), Gaps = 4/1228 (0%)
Strand=Plus/Plus
Query 1 ACCAAACATAGGGTTCTTGTTTGTTCTCTGCTTGAACAGAACTACAAGATTAAACAATGG 60
||||||| |||||||||| |||||||||||||| |||||||||||| |||||||||||||
Sbjct 11 ACCAAACTTAGGGTTCTTCTTTGTTCTCTGCTTCAACAGAACTACAGGATTAAACAATGG 70
Query 61 AAGAGAAAAAAGTAGTAAGAGCGTTAAGCGAGCACCTATCACTACCTCCTCCACCATCTC 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 71 AAGAGAAAAAAGTAGTAAGAGCGTTAAGCGAACACCTATCACTACCTCCTCCACCATCTC 130
Query 121 CTTCTGTAGCGGTAGCCATTAATGGGAAGAAGAAGAGCAAATACGTCGCTTTTTGGGCTC 180
||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct 131 CTTCTGTAGCGGTAGCCATCAACGGGAAGAAGAAGAGCAAATACGTCGTTTTTTGGGCTC 190
Query 181 TTGAGAAGTTCATACCTGAAGGTTTCACTGATTTCAAATTGCTTTATGTTCGTCCTCCTG 240
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 191 TTGAGAAGTTTATACCTGAAGGTTTCACTGATTTCAAATTGCTCTATGTTCGTCCTCCTG 250
Query 241 TCAGTTACATCCCTACCCCAATGGGGAATACGATATCGGTATCAGAGCTTAGGGACGACG 300
|| ||||||||||||||||||||||| | || || |||||||||||||||| || || |
Sbjct 251 TCTCTTACATCCCTACCCCAATGGGGATTGCGGTAGCGGTATCAGAGCTTAGAGAGGATG 310
Query 301 TAGTATCAGCTTACAAACAAGAAGTGGATTGGAGCACAAACGAGATGCTTCGTCCCTACA 360
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 311 TAGTATCAGCTTACAAACAAGAACTGGATTGGAGCGCAAACGAGATGCTTCGTCCTTACA 370
Query 361 AGAAAATGTTTGAGAGGAGAAAGGTGCAAGTAGAGGTTTTGGTT-CTGGATTCAAACGAG 419
||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| |||
Sbjct 371 AGAAAATGTTTGAAAGGAGAAAGGTGCAAGTAGAGGTTTT-GTTGCTGGATTCACTTGAG 429
Query 420 CCTGCAGCTGCGATAGCGGAAGAGATTGCTGGAACTGGAGTCACAAAACTGGTAATAGGA 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CCTGCAGCCGCGATAGCGGAAGAGATTGCTGGAACTGGAGTCACAAAACTGGTAATAGGA 489
Query 480 ATGTCTCTCCGCGGATTCTTTTCAAGAAAGATCGATATGTCTTCTATGATCGCAACAGCT 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 490 ATGTCTCTCCGCGGATTCTTTTCAAGAAAGATCGATATGTCTTCTTTGATCGCAACAGCT 549
Query 540 GTTCCGAGATTCTGCACTGTCTATGTGATCTCGAAGGGGAAACTAGCTTCCGTGCGTCCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GTTCCGAGATTCTGCACTGTCTATGTGATCTCGAAGGGGAAACTAGCTTCCGTGCGTCCT 609
Query 600 TCTGAGTCAGACGCTAGCGGAAGCATAAGATTCGAGAGAAGCAGTTCCACAAGTGGCTCC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 TCTGAGTCAGACGCTAGCGGAAGCATAAGATTCGAGAGAAGCAGTTCCACAAGTGGCTCC 669
Query 660 ACTGATAGTCCAAGACTTCCTCCTGAGTACCAAGACTTTCTCTC-GTTTGTTTCGGAAGG 718
||||||||||| ||||| |||||||||||||||||||||||||| | | ||||||||||
Sbjct 670 ACTGATAGTCCTAGACTCCCTCCTGAGTACCAAGACTTTCTCTCCGCT-GTTTCGGAAGC 728
Query 719 ACAATCCCGAGTCTCTCCTTTTTCCCCTGCTCCGAAAAATTCGTTGGGAAGCAGCGCAGT 778
|||||||||||||||||||||||| ||||||| |||| ||||| ||||||||| ||||||
Sbjct 729 ACAATCCCGAGTCTCTCCTTTTTCTCCTGCTCTGAAACATTCGATGGGAAGCAACGCAGT 788
Query 779 GGTTCAGATGGATACGAGTTCTAGCGGGACGGACCAAGAGGAAGTATCTACTGGGAGAGG 838
|| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 789 GGCTCAGATGGATACGAGTTCGAGCGGGACGGACCAAGAGGAAGTATCTACGGGGAGAGG 848
Query 839 GATGGAGATTGTCCATAGCGGTATTGAAGGAAAGAAGAATAAGGATGAGAGCTTTAGCGC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GATGGAGATTGTCCATAGCGGTATTGAAGGAAAGAAGAATAAGGATGAGAGCTTTAGCGC 908
Query 899 CTCGTTCCCAATGGGAACGGAAGCTTACAACTCGATGAGCTGGACGTCTAAATGGAGAGA 958
|||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 909 TTCGTTCCCAATGGGTACAGAGGCTTACAACTCGATGAGCTGGACGTCTAAATGGAGAGA 968
Query 959 TCACGAGGATAGGAGAGAGATCAGGAGCTCTTCTTCGAGCAACAACCACGATCTAGCCAA 1018
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 969 TCACGAGGATAGGAGAGAGATGAGGAGCTCTTCTTCGAGTAACAACCACGATCTAGTCAA 1028
Query 1019 TATGGACTGGGGTGCCGTGGTTCCTGAGAACTATTCTTGGGTTTCTCATTGTGCCTCTAA 1078
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1029 TATGGACTGGGGTGCCGTGGTTCCTGAGAACTATTCTTGGGTTTCTCATACTGCCTCTCA 1088
Query 1079 CATGTCTGATGGACTCCTCAGTGTCCATTCCATTACCGATAATCAGGTGAATCTGAACTT 1138
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1089 CATGTCTGATGGACTCCTCAGTGTCCATTCTATTACCGATAATCAGGTGAATCTGAACTT 1148
Query 1139 TGAGATAGAGAAGCTGAGAGCGGAGCTGAAGCATGTTCAGGAGATGTATGCCATGGCTCA 1198
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 TGAGATAGAGAAACTGAGAGCGGAGCTGAAGCATGTTCAGGAGATGTATGCCATGGCTCA 1208
Query 1199 AACCGAGACTGTGGGTGCTTCACAAAAG 1226
|||||||||||| ||||||||| |||||
Sbjct 1209 AACCGAGACTGTTGGTGCTTCAAAAAAG 1236
Score = 1755 bits (950), Expect = 0.0
Identities = 1091/1160 (94%), Gaps = 5/1160 (0%)
Strand=Plus/Plus
Query 1248 GAGAAAGATAAGCT-CAGGCTTCTCTCGTCTCTCCCGGGATCCAATACCAACATTATACC 1306
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1444 GAGAAAGATAAGCTCCAGGCTTCTCTCGTCTCTCCCGGGGTCCAATACCAACATTATACC 1503
Query 1307 TGGGAGGAAATCACAGCCGCGACTTTCTGACTTCGCGGAAAATCTCAAGATTGGAATCGG 1366
|||||||||||| ||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct 1504 TGGGAGGAAATCGCAGCCGCAAC-TTCTGACTTCGCAGAAAATCTCAAGATTGGAATCGG 1562
Query 1367 AGCCTATGGAACCGTCTACAAATGTAATCTTCATCACACGACTGGTGCTGTCAAGGTCCT 1426
|||||||||| | ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1563 AGCCTATGGATCAGTCTACAAATGTAATCTACATCACACGACCGGTGCTGTCAAGGTCCT 1622
Query 1427 TCACGCAGGAGAAACTCAGCTCTCTAAACAGTTTGATCAAGAGCTTGAGATCTTGAGCAA 1486
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1623 TCACGCTGGAGAAACTCAGCTCTCGAAACAGTTTGATCAAGAGCTTGAGATCTTAAGCAA 1682
Query 1487 AATCCGACATCCTCACCTAGTCCTCCTCCTTGGGGCATGTCCCGAACGAGGCTGCCTTGT 1546
||| |||||||||||| |||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 1683 AATTCGACATCCTCACTTAGTCCTCCTACTAGGGGCGTGTCCCGAACGCGGCTGCCTTGT 1742
Query 1547 CTACGAGTACATGGACAACGGAAGCTTAGATGACCGGTTGATGCTAGTCAACAACACACC 1606
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1743 CTACGAGTACATGGACAACGGAAGCTTAGATGACCGGTTGATGCTAGTCAACGACACACC 1802
Query 1607 ACCGATCCCTTGGTTCGATCGTTTCAGGATTGCATTAGAAGTCGCTTCAGCGCTTGTATT 1666
||||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1803 ACCGATCCCTTGGTTTGAGCGTTTCAGGATCGCTTTAGAAGTCGCTTCAGCGCTTGTATT 1862
Query 1667 CCTCCACAAATCCAAACCTAGACCCATCATTCACCGTGATCTCAAACCAGGAAACATCTT 1726
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1863 CCTCCACAAATCCAAGCCTAGACCAATCATTCACCGTGACCTCAAACCAGGAAACATCTT 1922
Query 1727 GCTTGACCACAACTTCGTCAGCAAACTTGGAGACGTTGGTCTGTCAACAATGGTTAACCA 1786
||||||||||||||||||||||||||| || || |||||||| |||||||||||||||||
Sbjct 1923 GCTTGACCACAACTTCGTCAGCAAACTCGGCGATGTTGGTCTCTCAACAATGGTTAACCA 1982
Query 1787 AGACGATGATTCATCCAATCTAACCATCTTCAAGAAAACCAGTCCCGTGGGCACGCTCTG 1846
|||||||| ||||| | | ||| ||||||||| |||||||||||||||||||||||||
Sbjct 1983 AGACGATGTTTCAT-C--TAGAACTATCTTCAAGCAAACCAGTCCCGTGGGCACGCTCTG 2039
Query 1847 TTACATCGACCCTGAGTATCAGCGTACCGGGATTATCTCACCTAAATCAGATGTGTACTC 1906
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2040 TTACATTGACCCTGAGTATCAGCGAACCGGGATTATCTCACCTAAATCGGATGTGTACTC 2099
Query 1907 CCTCGGAATTGTGATTCTGCAGCTATTAACAGCGAAACCCGCGATAGCGATTACTCATAT 1966
||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct 2100 CCTCGGAGTTGTGATTCTGCAGCTAATAACCGCGAAACCCGCCATAGCGATTACTCATAT 2159
Query 1967 GATGGAAGAAGCGATCGGAGACGATGCTGAATTTATGGCAATCTTGGATAAGAAAGCTGG 2026
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 GGTGGAAGAAGCTATCGGAGACGATGCTGAATTTATGGCAATCTTGGATAAGAAAGCTGG 2219
Query 2027 GTCTTGGCCCATCAGTGAGACCCGTGAGTTAGCCGCTTTGGGATTGTGTTGCACGGAAAT 2086
|||||||||||||||||| || ||||||||||||||||||||| ||||||| || |||||
Sbjct 2220 GTCTTGGCCCATCAGTGATACTCGTGAGTTAGCCGCTTTGGGACTGTGTTGTACAGAAAT 2279
Query 2087 GAGACGCAGAGACAGACCGGATCTTAAAGATCAAATCATCCCGGCTTTGGAACGGCTCAA 2146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 GAGACGCAGAGACAGACCGGATCTTAAAGATCAAATCATCCCGGCTTTGGAACGGCTCAG 2339
Query 2147 GAAAGTTGCCGACAAAGCTCAAAACTCGCTCTCGAGAACTCCATCTGGTCCTCCATCTCA 2206
|||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 2340 GAAAGTCGCCGACAAAGCTCAAAACTTGCTTTCGAGAACTCCGTCTGGTCCTCCATCTCA 2399
Query 2207 TTTCATTTGCCCACTCGTAAAGGGAGTGATGAACGAGCCGTGCGTGGCTGCGGATGGGTA 2266
||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2400 TTTCATTTGCCCACTTTTGAAGGGAGTAATGAACGAGCCGTGCGTGGCTGCGGATGGGTA 2459
Query 2267 TACGTACGATCGGGAAGCTATAGAGGAATGGCTGAGAGAGAATGATACTTCACCAGTGAC 2326
|||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||
Sbjct 2460 CACGTACGATCGGGAAGCTATAGAGGAATGGCTGAGACAGAAAGATACATCACCGGTGAC 2519
Query 2327 GAACCTTCCATTGCCTAACAAGAACCTTCTTGCTAATTACACTCTTTACTCAGCAATCAT 2386
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2520 GAATCTTCCATTGCCTAACAAGAACCTTATTGCTAATTACACTCTTTACTCAGCAATCAT 2579
Query 2387 GGAGTGGAAATCTAATAAAC 2406
||||||||||||||||||||
Sbjct 2580 GGAGTGGAAATCTAATAAAC 2599
> AT2G24370.1 | Symbols: | Protein kinase protein with adenine
nucleotide alpha hydrolases-like domain | chr2:10369979-10373063
REVERSE LENGTH=2367
Length=2367
Score = 86.1 bits (46), Expect = 1e-15
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1696 TTCACCGTGATCTCAAACCAGGAAACATCTTGCTTGACCACAACTTCGTCAGCAA 1750
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1796 TTCACCGTGATCTCAAACCAGGAAACATCTTGCTAGACCGTAACTTCGTCAGCAA 1850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120782511270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5