BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496320
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27260.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 712 0.0
AT5G35915.1 | Symbols: | unknown pseudogene | chr5:14044866-14... 638 0.0
AT1G28002.1 | Symbols: | Pseudogene of AT5G27260; Homeodomain-... 514 6e-145
> AT5G27260.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G29880.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:9603943-9604930 FORWARD LENGTH=912
Length=912
Score = 712 bits (385), Expect = 0.0
Identities = 608/708 (86%), Gaps = 45/708 (6%)
Strand=Plus/Plus
Query 1 ATGGGAGATGCAGAA-CC-AAAGaa-aaaaaaGGGGAATAACAATCTGTGGTCTCCAGAG 57
||||||||| || || || ||| || |||||||||| || | |||| |||||||||||||
Sbjct 1 ATGGGAGATTCACAACCCAAAAAAAGAAAAAAGGGGGATTATAATCCGTGGTCTCCAGAG 60
Query 58 GAGACTAAGCTGTTGGTACAACTTCTTGTGGAAGGGATCAATAATAATTGGCGTGATTCT 117
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GAGACTAAGCTGTTGGTGCAACTTCTTGTGGAAGGGATCAACAATAATTGGCGTGATTCT 120
Query 118 AATGGTACAATGAGTAAATTAACCGTGGAGACGAAGATTT-TACCAGAAATCAACAAAGA 176
||||| ||||| ||||||||||||||||| |||||| ||| | || || |||||||||||
Sbjct 121 AATGGCACAATCAGTAAATTAACCGTGGAAACGAAG-TTTATGCCGGAGATCAACAAAGA 179
Query 177 GTTTCGTCGTTCAAAAAACTACAATCACTACCAAAGCAGAATGAAGTATTTAAAATTACA 236
|||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 180 GTTTTGTCGTTCAAAAAACTACAATCACTACTTAAGCAGAATGAAGTATTTAAAAATACA 239
Query 237 ATACCAAAGTTCTCTTGATCTTAAGCGTTTTAGTTCTGGTTTTGGTTGGGATCCTTCGAC 296
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 240 ATACCAAAGTTGTCTTGATCTTCAGCGTTTTAGTTCTGGTTTTGGTTGGGATCCTTTAAC 299
Query 297 AAAAAGATTTACCGCTCCTGATGAAGTTTGGGA-CGATTATCTAAAAGCACATCCGAACA 355
|||||||||||| ||| |||||||||||| ||| ||| ||||||||||||||||||||||
Sbjct 300 AAAAAGATTTACGGCTTCTGATGAAGTTT-GGAGCGACTATCTAAAAGCACATCCGAACA 358
Query 356 ATAAACAACTTCGTTATGATACATTTGAATTTTTTGAAGAGTTGCAAATCATATTTGGGG 415
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 359 ATAAACAACTTCGTTATGATACATTTGAATTTTTTGACGAGTTGCAAATCATATTTGGGG 418
Query 416 AAGGTGTTGCTACTGGGAAAAATGCAATTGGATTGTGTGATAGTACGGATGCTGCAATTG 475
|||||||||||||||| ||||||||||||||||| |||||||||||||||| | | ||
Sbjct 419 AAGGTGTTGCTACTGGAAAAAATGCAATTGGATTATGTGATAGTACGGATG--G-ACTTA 475
Query 476 -G-ATTGTG-TGATAGTACGGATGCACGTACGTACAAATCTGGGGA-GAATTCAAGAGAA 531
| | | | || || | | || || | | | || | || ||| || || || ||
Sbjct 476 CGTACAGAGCTGG-AG-A-GAATCCAAGAAA--AGAA-TATGTGGATGATTTT--GACAA 527
Query 532 -GAATATGTG-AGTGATTTTGACAACGGTCATCA-GAG-CATT--A-CGC-AC-CA---T 579
| |||| | | |||| | ||||| |||||| ||| ||| | | | || || |
Sbjct 528 CGTGTATGAGTA-TGATACT-ACAAC--TCATCATGAGTCATCGGAGCACTACGCACCAT 583
Query 580 TTATGTCTCATGGAACTTCAGAAAGTCCTACAGAGAAGCTTCCCCCCACGTAAAAGAACA 639
|||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 584 TTATGTCTCATGGAACTTCAGAAAGTCCTA-AG-----CTTCCCCC-ACGTAAAAGAACA 636
Query 640 AGATCTGAGAGAAATACTTCACAAAAAGAAGAAAGTTCTATGATGGTT 687
||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 637 AGATCTGAGAGAAGTACTTCACAAAAAGAAGAAAGTCCTATGATGGTT 684
Score = 276 bits (149), Expect = 3e-73
Identities = 178/192 (93%), Gaps = 1/192 (1%)
Strand=Plus/Plus
Query 688 AAGAGAGACAACAAAAAGAAGTGGCACaaaaaaaaaaTTAACGTTTGGGATGCTCTAAAA 747
||||||| |||||||| ||||||||||| ||||| || |||||||||||||||| |||||
Sbjct 722 AAGAGAGGCAACAAAATGAAGTGGCACAGAAAAAGAA-TAACGTTTGGGATGCTATAAAA 780
Query 748 GAAGTTTCAGATTTGGATGAACGTATTCGTTTCAAGGCACTTACCAAGATTTATCATTTG 807
||| |||| || ||||||||| ||||||||| |||||||||||| || ||||||||||||
Sbjct 781 GAAATTTCTGACTTGGATGAATGTATTCGTTACAAGGCACTTACGAAAATTTATCATTTG 840
Query 808 GGAATACAAGACGTTTTCGTGAGCATGTCGGTGGAAGAGAGGCTAGGATGGATTCAAACC 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGAATACAAGACGTTTTCGTGAGCATGTCGGTGGAAGAGAGGCTAGGATGGATTCAAACC 900
Query 868 AGTATGGAATAA 879
| ||||||||||
Sbjct 901 ATTATGGAATAA 912
> AT5G35915.1 | Symbols: | unknown pseudogene | chr5:14044866-14045859
FORWARD LENGTH=918
Length=918
Score = 638 bits (345), Expect = 0.0
Identities = 418/453 (92%), Gaps = 5/453 (1%)
Strand=Plus/Plus
Query 18 AAAGaa-aaaaaaGGGGAATAACAATCTGTGGTCTCCAGAGGAGACTAAGCTGTTGGTAC 76
||| || |||||||||| || | |||| |||||||||||||||||||||||||||||| |
Sbjct 20 AAAAAAGAAAAAAGGGGGATTATAATCCGTGGTCTCCAGAGGAGACTAAGCTGTTGGTGC 79
Query 77 AACTTCTTGTGGAAGGGATCAATAATAATTGGCGTGATTCTAATGGTACAATGAGTAAAT 136
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 80 AACTTCTTGTGGAAGGGATCAACAATAATTGGCGTGATTCTAATGGCACAATCAGTAAAT 139
Query 137 TAACCGTGGAGACGAAGATTT-TACCAGAAATCAACAAAGAGTTTCGTCGTTCAAAAAAC 195
|||| ||||| |||||| ||| | || || ||||||||||||||| ||||||||||||||
Sbjct 140 TAACTGTGGAAACGAAG-TTTATGCCGGAGATCAACAAAGAGTTTTGTCGTTCAAAAAAC 198
Query 196 TACAATCACTACCAAAGCAGAATGAAGTATTTAAAATTACAATACCAAAGTTCTCTTGAT 255
|||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 199 TACAATCACTACTTAAGCAGAATGAAGTATTTAAAAATACAATACCAAAGTTGTCTTGAT 258
Query 256 CTTAAGCGTTTTAGTTCTGGTTTTGGTTGGGATCCTTCGACAAAAAGATTTACCGCTCCT 315
||| ||||||| ||||||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 259 CTTCAGCGTTTCAGTTCTGGTTTTGGTTGGGATCCTTTAACAAAAAGATTTACGGCTTCT 318
Query 316 GATGAAGTTTGGGA-CGATTATCTAAAAGCACATCCGAACAATAAACAACTTCGTTATGA 374
|||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 319 GATGAAGTTT-GGAGCGACTATCTAAAAGCACATCCGAACAATAAACAACTTCGTTATGA 377
Query 375 TACATTTGAATTTTTTGAAGAGTTGCAAATCATATTTGGGGAAGGTGTTGCTACTGGGAA 434
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 378 TACATTTGAATTTTTTTACGAGTTGCAAATCATATTTGGGGAAGGTGTTGCTACTGGAAA 437
Query 435 AAATGCAATTGGATTGTGTGATAGTACGGATGC 467
||||||||||||||| |||||||||||||||||
Sbjct 438 AAATGCAATTGGATTATGTGATAGTACGGATGC 470
Score = 281 bits (152), Expect = 6e-75
Identities = 179/192 (93%), Gaps = 1/192 (1%)
Strand=Plus/Plus
Query 688 AAGAGAGACAACAAAAAGAAGTGGCACaaaaaaaaaaTTAACGTTTGGGATGCTCTAAAA 747
||||||| |||||||||||||||||||| ||||| || |||||||||||||||| |||||
Sbjct 728 AAGAGAGGCAACAAAAAGAAGTGGCACAGAAAAAGAA-TAACGTTTGGGATGCTATAAAA 786
Query 748 GAAGTTTCAGATTTGGATGAACGTATTCGTTTCAAGGCACTTACCAAGATTTATCATTTG 807
||| |||| || ||||||||| ||||||||| ||||||||||||||| ||||||||||||
Sbjct 787 GAAATTTCTGACTTGGATGAATGTATTCGTTACAAGGCACTTACCAAAATTTATCATTTG 846
Query 808 GGAATACAAGACGTTTTCGTGAGCATGTCGGTGGAAGAGAGGCTAGGATGGATTCAAACC 867
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 847 GGAATACAAGACGTTTTCGTGAGCATGTCGGTGGAAGAGAGGCTAGGATGAATTCAAACC 906
Query 868 AGTATGGAATAA 879
| ||||||||||
Sbjct 907 ATTATGGAATAA 918
Score = 213 bits (115), Expect = 2e-54
Identities = 126/131 (96%), Gaps = 1/131 (1%)
Strand=Plus/Plus
Query 557 GTCATCAGAGCATTACGCACCATTTATGTCTCATGGAACTTCAGAAAGTCCTACAGAGAA 616
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GTCATCGGAGCATTACACACCATTTATGTCTCATGGAACTTCAGAAAGTCCTACAGAGAA 620
Query 617 GCTTCCCCCCACGTAAAAGAACAAGATCTGAGAGAAATACTTCACAAAAAGAAGAAAGTT 676
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 621 GCTTCCCCC-ACGTAAAAGAACAAGATCTGAGAGAAGTACTTCACAAAAAGAAGAAAGTC 679
Query 677 CTATGATGGTT 687
|||||||||||
Sbjct 680 CTATGATGGTT 690
> AT1G28002.1 | Symbols: | Pseudogene of AT5G27260; Homeodomain-like
protein | chr1:9759212-9760165 FORWARD LENGTH=879
Length=879
Score = 514 bits (278), Expect = 6e-145
Identities = 390/443 (88%), Gaps = 12/443 (3%)
Strand=Plus/Plus
Query 30 GGGGA-ATAACAATCTGTGGTCTCCAGAGGAGACTAAGCTGTTGGTACAACTTCTTGTGG 88
||||| || | || | |||||||| | ||||||||||| ||||||| |||||||||| ||
Sbjct 21 GGGGAGATTATAAGCCGTGGTCTCGAAAGGAGACTAAGTTGTTGGTGCAACTTCTTGAGG 80
Query 89 AAGGGATCAATAATAATTGGCGTGATTCTAATGGTACAATGAGTAAATTAACCGTGGAGA 148
|| |||||| ||||||| ||||||||||||||| ||||| ||||||||||| ||||| |
Sbjct 81 AAAAGATCAACAATAATTAGCGTGATTCTAATGGCACAATAAGTAAATTAACTGTGGAAA 140
Query 149 CGAAGATTTTA-CCAGAAATCAACAAAGAGTTTCGTCGTTCAAAAAACTACAATCACTAC 207
|||| ||| || | | |||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 141 CGAATATTATATCGA-AAATCAAC--A-AGTTTTGTCGTTCAAAAAACTACAATCACTAC 196
Query 208 CAAAGCAGAATGAAGTA-TTTAAAATTACAATACCAAAGT-TCTCTTGATCTTAAGCGTT 265
|||| |||||||||||| ||||||| |||||||||||| | | |||||||||| ||||||
Sbjct 197 CAAAACAGAATGAAGTATTTTAAAA-TACAATACCAAA-TATATCTTGATCTTCAGCGTT 254
Query 266 TTAGTTCTGGTTTTGGTTGGGATCCTTCGACAAAAAGATTTACCGCTCCTGATGAAGTTT 325
|||||| ||||||||||||||||| || |||||||||||||| ||| |||| ||||||
Sbjct 255 TTAGTTGTGGTTTTGGTTGGGATCTTTTGACAAAAAGATTTATGGCTTTTGATAAAGTTT 314
Query 326 -GGGACGATTATCTAAAAGCACATCCGAACAATAAACAACTTCGTTATGATACATTTGAA 384
||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 315 AGGG-CAATTATCTAAAAGCACATCCAAACAATAAACAACTTCGTTATGATACATTTGAA 373
Query 385 TTTTTTGAAGAGTTGCAAATCATATTTGGGGAAGGTGTTGCTACTGGGAAAAATGCAATT 444
||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 374 TTTTTTGGCGAGTTGCAAATCATATTTGGGGAAAGTGTTGCTACTGGAAAAAATGCAATA 433
Query 445 GGATTGTGTGATAGTACGGATGC 467
||||| |||||| ||||||||||
Sbjct 434 GGATTATGTGATTGTACGGATGC 456
Score = 87.9 bits (47), Expect = 1e-16
Identities = 57/62 (92%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 557 GTCATCAGAGCATTACGCACCATTTATGTCTCATGGAACTTCAGAAAGTCCTACAGAGAA 616
|||||| |||||||||||||||||||||||||||||||||||||||| || || ||| ||
Sbjct 547 GTCATCGGAGCATTACGCACCATTTATGTCTCATGGAACTTCAGAAAATCATATAGAAAA 606
Query 617 GC 618
||
Sbjct 607 GC 608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5