BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496327
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61600.1 | Symbols: ERF104 | ethylene response factor 104 | ... 1480 0.0
> AT5G61600.1 | Symbols: ERF104 | ethylene response factor 104
| chr5:24766386-24767430 REVERSE LENGTH=1045
Length=1045
Score = 1480 bits (801), Expect = 0.0
Identities = 970/1049 (92%), Gaps = 22/1049 (2%)
Strand=Plus/Plus
Query 1 ATTCCCACTTCCACACATACACATATACAACAGATCAATAAGAGAGTCAATCAAGTTAAC 60
|||||||||||||||||||||||||||||||||| | |||||||||||||||| | |
Sbjct 1 ATTCCCACTTCCACACATACACATATACAACAGAGC---AAGAGAGTCAATCAAG-T-A- 54
Query 61 TTGGAGTGAAGATGGCAACTAAACAAGAAGCTTTAGCTATCGAATTCATAAGCCAACACC 120
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 55 ---GAGTGAAGATGGCAACTAAACAAGAAGCTTTAGCCATCGATTTCATAAGCCAACACC 111
Query 121 TTCTCACAGACTTTGCTTCCATGGAAACTG---ACCCATCTCTTTTTACCAATCAAGTTC 177
||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 112 TTCTCACAGACTTTGTTTCCATGGAAACTGATCACCCATCTCTTTTTACCAACCAACTTC 171
Query 178 ACAACTTTCACTCAGAAACAAGCCCTAGAACCATCAGCAACCAGTCCCCTAAACCGAACT 237
|||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| |
Sbjct 172 ACAACTTTCACTCAGAAACAGGCCCTAGAACCATCACCAACCAATCCCCTAAACCGAATT 231
Query 238 CGACTCTTAACCAGCGTAAACCGCCCTTACCGAATCTATCCGTCCCAAGAATGGTCTCAA 297
|||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||
Sbjct 232 CGACTCTTAACCAGCGTAAACCGCCCTTACCGAATCTATCCGTCTCGAGAACGGTTTCAA 291
Query 298 CAAAGACAGAGAAAGAGGAGGAGGAAGAGAGGCACTACAGGGGAGTGAGACGAAGACCGT 357
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 292 CAAAGACAGAGAAAGAGGA--A-GAAGAGAGGCACTACAGGGGAGTGAGACGAAGACCGT 348
Query 358 GGGGAAAATATGCGGCGGAGATTAGAGATCCGAACAAAAAGGGTTCTAGGATTTGGCTTG 417
|||||||||| |||||||||||||| ||||||||||||||||||| |||||| |||||||
Sbjct 349 GGGGAAAATACGCGGCGGAGATTAGGGATCCGAACAAAAAGGGTTGTAGGATCTGGCTTG 408
Query 418 GGACTTACGACACGGCCGTGGAAGCTGCAAGAGCTTATGACCAAGCAGCGTTTCAATTGC 477
||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 409 GGACTTACGACACTGCCGTGGAAGCTGGAAGAGCTTATGACCAAGCGGCGTTTCAATTAC 468
Query 478 GTGGAAGAAAAGCAATCTTGAATTTTCCTCTCGATATTAGGGCAACGTCCGAAACTTGTT 537
||||||||||||||||||||||||| ||||||||| |||||| ||||| ||||||||||
Sbjct 469 GTGGAAGAAAAGCAATCTTGAATTTCCCTCTCGATGTTAGGGTTACGTCAGAAACTTGTT 528
Query 538 TTGAGGAAGGAGCCGTCGGGTTAGGGCAACGAAAGCGGGTTAAGAGTTCTCCGCCGGAGG 597
|| |||||||| |||| |||||| |||||||||| | |||| ||||||||||||| |
Sbjct 529 CTGGGGAAGGAGTTATCGGATTAGGGAAACGAAAGCGAGATAAGGGTTCTCCGCCGGAAG 588
Query 598 AGGAGAAGGAGAAGGTTAGGGTTAAAGTGGAGGAAGAAGAGAGTAATACGTCGGAGACGA 657
||||||| | | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AGGAGAA-G-G-CGGCTAGGGTTAAAGTGGAGGAAGAAGAGAGTAATACGTCGGAGACGA 645
Query 658 CGGAGGCAGAGGTTGA---GGCGGTACCTTTGACGCCGTCAAGTTGGATGGGGTTTTGGG 714
||||||| |||||||| || |||||| |||||||||||||||||||||||||||||||
Sbjct 646 CGGAGGCTGAGGTTGAGCCGGTGGTACCATTGACGCCGTCAAGTTGGATGGGGTTTTGGG 705
Query 715 ATGTGGGAGCAGGAGATGGGATCTTCAGTATTCCTCAGTTATCTCCGACGTCTCCCAACT 774
||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct 706 ATGTGGGAGCAGGAGATGGTATTTTCAGTATTCCTCCGTTATCTCCGACGTCTCCCAACT 765
Query 775 TCTCCGTTATCACCGTCACTT-GAACTTCGGAAAAGTCAACGGACGATGACGTTTTCACT 833
| ||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 766 TTTCCGTTATCTCCGTCACTTAAAACTTCGGAAAAGTCAACGTACGATGACGTTTTCACT 825
Query 834 TGCGTCACTCTCATGATTTCATTTATTCTTGTATAATATAAAGGTAGCGGTAGTGTGCAA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 TGCGTCACTCTCATGATTTCATTTATTCTTGTATAATATAAAGGTAGCGGTAGTGTGCAA 885
Query 894 ATATCAAATAAGTAGTTTAATTAGTACCAATCATTTTATTCATTAATTTTCTTAGAAGAA 953
||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||
Sbjct 886 ATATCAAATAAGTAGTTTAATTAGTACCAATCATTTTATTCATTATTTTTTTTAGTAGAA 945
Query 954 TATTTGGATGTTGAAAATATGAACTGAATTTTGTATTCGTTGATGTTATAAATTTATTGA 1013
|||||||||||||||||||| || | ||||||||||| ||||||||||||||||||||||
Sbjct 946 TATTTGGATGTTGAAAATATAAATTTAATTTTGTATTTGTTGATGTTATAAATTTATTGA 1005
Query 1014 TTGTATAAACATTCTTAGTCATCAGTTTC 1042
|||||||||||||||||||||||||||||
Sbjct 1006 TTGTATAAACATTCTTAGTCATCAGTTTC 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5