BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496328 Length=405 Score E Sequences producing significant alignments: (Bits) Value AT5G61605.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 462 9e-130 > AT5G61605.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Maternally expressed gene (MEG) family protein (TAIR:AT2G16505.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24768382-24769010 REVERSE LENGTH=539 Length=539 Score = 462 bits (250), Expect = 9e-130 Identities = 369/423 (87%), Gaps = 21/423 (5%) Strand=Plus/Plus Query 1 ATAGCAAACAACGTTTCTGTAT--CTTTAAGAAG-A-ATAT--C-ACAACAATGTCATCA 53 ||| ||||||||||||| |||| ||||||||| | |||| | ||||||||||||||| Sbjct 6 ATAACAAACAACGTTTCGGTATAATTTTAAGAAGAATATATCACAACAACAATGTCATCA 65 Query 54 TCACATTTTGCTATACTTTGCGTCTTCATGATTTTCCTCGTTCCTCTACATGAATTTGGA 113 | | |||||||||| |||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 66 TTATATTTTGCTATCCTTTGCCTCTTCATGATTTTCCTCGTTCCTTTACATGAATTTGGA 125 Query 114 AACGCACAAGGTTCTGAAGCGGGGCTGCAATTAGATCCATCACTGTGTGTGCGTGTAC-T 172 ||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||| | Sbjct 126 AACGCACAAGGTTCTGAGGCGGAGCTGCAATTAGATCCATCAATGTGTCTGCGTGT-CGA 184 Query 173 ATGTGCAAAACACAGAAATCAAAAATGGTGTTTTTGCTGTGGCGGACAACCGAAGACCTG 232 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct 185 ATGTGCAAAACACAGAAATCAAAAATGGTGTTTTTGCTGTGCCGGACTACCGAGGACCTG 244 Query 233 TTTTCTTAATAAACAAGGCTGTACGGCTGTCTGCAAGAGCCCATCTCCTTCAATGGCTTA 292 ||||||| |||||| |||||||||| ||||||||||| || |||||||||||||||||| Sbjct 245 TTTTCTTGATAAACGAGGCTGTACGTCTGTCTGCAAGCGCGAATCTCCTTCAATGGCTTA 304 Query 293 AGAAACTCGAAGAACCCATGTATACTATTTACT--T-ACtttttt-tttCTCTTGATATA 348 ||||||| ||||||||||| | ||| ||||||| | || ||| |||||||||||||| Sbjct 305 AGAAACTTGAAGAACCCATATCTACAATTTACTAATTACGTTTAAATTTCTCTTGATATA 364 Query 349 TGAATATGAATACA--T--AT--AAAGGAAACAAACACAATTATGCTTATCGTAATTTAA 402 |||||| |||| | | || ||||||||||| || ||||||||||||||||||||| Sbjct 365 TGAATA--AATATAAGTTTATGGAAAGGAAACAATTACGATTATGCTTATCGTAATTTAA 422 Query 403 CAT 405 ||| Sbjct 423 CAT 425 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19152012369 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5