BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496328

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61605.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   462    9e-130


> AT5G61605.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, 
flower; EXPRESSED DURING: 4 anthesis, petal differentiation 
and expansion stage; BEST Arabidopsis thaliana protein match 
is: Maternally expressed gene (MEG) family protein (TAIR:AT2G16505.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi 
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 
(source: NCBI BLink). | chr5:24768382-24769010 REVERSE LENGTH=539
Length=539

 Score =  462 bits (250),  Expect = 9e-130
 Identities = 369/423 (87%), Gaps = 21/423 (5%)
 Strand=Plus/Plus

Query  1    ATAGCAAACAACGTTTCTGTAT--CTTTAAGAAG-A-ATAT--C-ACAACAATGTCATCA  53
            ||| ||||||||||||| ||||   ||||||||| | ||||  | |||||||||||||||
Sbjct  6    ATAACAAACAACGTTTCGGTATAATTTTAAGAAGAATATATCACAACAACAATGTCATCA  65

Query  54   TCACATTTTGCTATACTTTGCGTCTTCATGATTTTCCTCGTTCCTCTACATGAATTTGGA  113
            | | |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct  66   TTATATTTTGCTATCCTTTGCCTCTTCATGATTTTCCTCGTTCCTTTACATGAATTTGGA  125

Query  114  AACGCACAAGGTTCTGAAGCGGGGCTGCAATTAGATCCATCACTGTGTGTGCGTGTAC-T  172
            ||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||| |  
Sbjct  126  AACGCACAAGGTTCTGAGGCGGAGCTGCAATTAGATCCATCAATGTGTCTGCGTGT-CGA  184

Query  173  ATGTGCAAAACACAGAAATCAAAAATGGTGTTTTTGCTGTGGCGGACAACCGAAGACCTG  232
            ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct  185  ATGTGCAAAACACAGAAATCAAAAATGGTGTTTTTGCTGTGCCGGACTACCGAGGACCTG  244

Query  233  TTTTCTTAATAAACAAGGCTGTACGGCTGTCTGCAAGAGCCCATCTCCTTCAATGGCTTA  292
            ||||||| |||||| |||||||||| ||||||||||| ||  ||||||||||||||||||
Sbjct  245  TTTTCTTGATAAACGAGGCTGTACGTCTGTCTGCAAGCGCGAATCTCCTTCAATGGCTTA  304

Query  293  AGAAACTCGAAGAACCCATGTATACTATTTACT--T-ACtttttt-tttCTCTTGATATA  348
            ||||||| ||||||||||| | ||| |||||||  | || |||   ||||||||||||||
Sbjct  305  AGAAACTTGAAGAACCCATATCTACAATTTACTAATTACGTTTAAATTTCTCTTGATATA  364

Query  349  TGAATATGAATACA--T--AT--AAAGGAAACAAACACAATTATGCTTATCGTAATTTAA  402
            ||||||  |||| |  |  ||  |||||||||||  || |||||||||||||||||||||
Sbjct  365  TGAATA--AATATAAGTTTATGGAAAGGAAACAATTACGATTATGCTTATCGTAATTTAA  422

Query  403  CAT  405
            |||
Sbjct  423  CAT  425



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5