BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496329
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61610.1 | Symbols: | Oleosin family protein | chr5:2477009... 968 0.0
> AT5G61610.1 | Symbols: | Oleosin family protein | chr5:24770099-24771252
FORWARD LENGTH=885
Length=885
Score = 968 bits (524), Expect = 0.0
Identities = 620/668 (93%), Gaps = 0/668 (0%)
Strand=Plus/Plus
Query 1 ATGCATTTCTTCGGCACGAAAGGCAAACCTCCTCTTTATGCCGGTATAGCCGTCGTATCC 60
||||||||||| |||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 1 ATGCATTTCTTTGGCACGAAAGACAAAGCTCCTATTTATGCCGGTATAGCCGTCGTATCC 60
Query 61 CTCATGATCCTCACTGGTTTAACTTTTGCCGGTACTGCCGTGACTCTAACCGTTATGATG 120
||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||
Sbjct 61 TTCATGATCCTCACCGGTTTAACCTTTGCCGGTACGGCCGTGGCTCTAACCGTTATGATA 120
Query 121 CCGGTTTTGGTGGTTCTTAGTCCGATTCTCGTACCGGCGGTAATCACTTCGAGTTTCTTG 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CCGGTTTTGGTGGTTCTTAGTCCGATTCTCGTACCGGCGGTAATCACATCGAGTTTCTTG 180
Query 181 GCAACGGGGTTCTTAGCTTCTGGTAGCCTCGGAGCATCCGGGATCGCCCTCCTCATCTGG 240
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 181 GCAACGGGGTTCCTAGCTTCTGGTAGCCTCGGAGCATTGGGGATCGCCCTCCTCATATGG 240
Query 241 CTCTACAACAAAGAAGAGCATTCCAGAGATACTCTGCATGCGCGAGGAGCTAGGCCTGAA 300
|||||||| ||||||||| ||||||||| |||| ||||||| ||||||| |||||||||
Sbjct 241 CTCTACAAGAAAGAAGAGTATTCCAGAGCTACTTTGCATGCACGAGGAGGTAGGCCTGAT 300
Query 301 GGGCCTAACAAGCTGGCAGAAAGTGGCAAGCAGTCAGGAGGAGATAATCTGTTGAAGGAA 360
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 301 GGGCCTAACAAGCTGGCAGAAAGTGGCAAGCAATCAGGAGGAGATAATCCGTTGAAGGAA 360
Query 361 GATAAGCCGCCAGAAAGAGACAAGTTGCCGAGAAGAGACAAGCCATCAAAGGAAGACAAT 420
|| ||||||||||||||||| ||| ||||||||| |||||||||||| ||||||||||||
Sbjct 361 GACAAGCCGCCAGAAAGAGATAAGCTGCCGAGAAAAGACAAGCCATCCAAGGAAGACAAT 420
Query 421 ATGCTGAAAGGAGATAAACTGGTCGAGGAGGACAAATTGCCGGCGGAGGAAGACAAACCA 480
|||||||||||||||| | |||||||||||| ||||||||||| |||||||| |||||
Sbjct 421 CTGCTGAAAGGAGATAAGCCGGTCGAGGAGGATAAATTGCCGGCTGAGGAAGAAAAACCG 480
Query 481 CCACAAAAAGATAAACCGGTGGAGGGAGACAAACCGCCACAAAAAGATAAACCGGTGGAA 540
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||
Sbjct 481 CCACAAAAAGATAAACCGGCGGAGGGACACAAACCGCCACAAAAAGATAAACCGGCGGAA 540
Query 541 GGAGATAAGCCGGCGGAGGAAGACAAACCGCCACAAAAAGATAAATCGGCGGAAGGAGAA 600
|||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 541 GGAGATAAACCGGTGGAGGAAGACAAACCGCCACAAAAAGATAAACCGGCGGAAGGAGAT 600
Query 601 AAGCATGTGGAAGAAGATATGTCTTTAGGAGGAGTTAAGCAAATGTCAATCCCTGAGATA 660
||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 601 AAGCATGTGGAAGAAGATATGCCTTTAGGAGGAGTTGAGCATTTGTCAATCCCTGAGATA 660
Query 661 TCAAAGGT 668
|||||||
Sbjct 661 CCAAAGGT 668
Score = 106 bits (57), Expect = 3e-22
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 489 AGATAAACCGGTGGAGGGAGACAAACCGCCACAAAAAGATAAACCGGTGGAAGGAGATAA 548
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 543 AGATAAACCGGTGGAGGAAGACAAACCGCCACAAAAAGATAAACCGGCGGAAGGAGATAA 602
Query 549 GCCGGCGGAGGAAGA 563
|| | ||| |||||
Sbjct 603 GCATGTGGAAGAAGA 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5