BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496330
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61620.1 | Symbols: | myb-like transcription factor family ... 1352 0.0
> AT5G61620.1 | Symbols: | myb-like transcription factor family
protein | chr5:24772383-24773507 FORWARD LENGTH=954
Length=954
Score = 1352 bits (732), Expect = 0.0
Identities = 901/977 (92%), Gaps = 34/977 (3%)
Strand=Plus/Plus
Query 1 ATGGTGAAGGAGACGGTGATGGTAGCGAAGACGTGCTCACACTGTGGCCACAATGGCCAT 60
||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1 ATGGTGAAGGAGACGGTGACGGTGGCGAAAACGTGCTCACACTGTGGCCATAATGGCCAT 60
Query 61 AACGCACGGACTTGTCTTAACGGCGTTAATAAGGGAAGTGTTAAACTGTTCGGCGTTAAT 120
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 AACGCACGGACTTGTCTCAACGGCGTTAATAAGGCAAGTGTTAAACTGTTCGGCGTTAAT 120
Query 121 ATATCTTCTGATCCGATTAGGCCGCCTGAGGTGACGGCGTTAAGGAAGAGTCTCAGTTTG 180
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 121 ATATCGTCTGATCCGATTAGGCCGCCTGAGGTAACGGCGTTAAGGAAGAGTCTTAGTTTG 180
Query 181 GGAAACCTTGATGCTCTTCTCGCTAACGATGACAGTAACGGTAACGGTGATCCTATCGCC 240
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 181 GGAAACCTTGATGCTCTTCTCGCTAACGATGAAAGTAACGGTAGCGGTGATCCTATCGCC 240
Query 241 GCCGTTGATGATACCGGTTATCATTCCGATGGTCAGATTCATTCCAAGAAGGGTAAAACT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCGTTGATGATACCGGTTATCATTCCGATGGTCAGATTCATTCCAAGAAGGGTAAAACT 300
Query 301 GCTCATGAGAAGAAAAAGGGGAAGCCATGGACGGAAGAAGAACATCGGAATTTCTTAATT 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 GCTCATGAGAAGAAAAAGGGGAAGCCATGGACGGAAGAAGAACATCGTAATTTCTTAATC 360
Query 361 GGTTTGAATAAACTCGGAAAAGGAGATTGGAGAGGAATTGCAAAGAGTTTCGTGACGACA 420
||||| || |||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 361 GGTTTAAACAAACTCGGAAAAGGAGATTGGAGAGGCATTGCAAAGAGTTTCGTGTCGACA 420
Query 421 AGAACACCAACACAAGTCGCAAGTCATGCTCAAAAATATTTTATTAGGTTAAACGTTAAC 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AGAACACCAACACAAGTCGCAAGTCATGCTCAGAAATATTTTATTAGGTTAAACGTTAAC 480
Query 481 GACAAGAGAAAAAGACGTGCTAGTCTCTTTGACATCTCTCTCGAAGATCAGAAGGAAAAA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 GACAAGAGAAAAAGACGTGCTAGTCTCTTTGACATCTCTCTCGAAGATCAGAAGGAGAAA 540
Query 541 GAGATGAATTCTCAAGATGCATCAACATCTTCATCAAAGACTCCACCTAAACAACCAATA 600
|||| ||| ||||||||||| |||||| | | ||||||||||||||||||||||
Sbjct 541 GAGAGGAACTCTCAAGATGCTTCAACA-----A--A--GACTCCACCTAAACAACCAATA 591
Query 601 ACCGGAATTCAACAACCGGTGGTACAAGGTCAGACCCATACCGAGATTTCGAACAGGTTT 660
|||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||
Sbjct 592 ACCGGAATTCAACAACCGGTAGTACAAGGTCATACTCAAACCGAGATTTCGAACAGGTTT 651
Query 661 CAGAGTTTATCAATGGAGTATATGCCAATCTACCAAACCGTACCACCTTACTACAACTTT 720
|||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 652 CAGAATTTATCAATGGAGTATATGCCAATCTACCAACCCATACCACCTTACTACAACTTT 711
Query 721 CCACCTCTTATGT----TCCA--T---CCAATGTACTATAGC-A-CTCCTGAAGTACCGG 769
|||||| |||||| |||| | |||||||||||| || | | ||| |||||||||
Sbjct 712 CCACCTATTATGTACCATCCAAATTATCCAATGTACTAT-GCCAAC-CCTCAAGTACCGG 769
Query 770 TTAGGTTTGTTCATCCTTCTGGTATACCTGTACCAAGGCATATACCGATTGGTATGCCTC 829
||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 770 TTAGGTTTGTTCATCCTTCTGGTATACCTGTTCCAAGACATATACCGATTGGTTTGCCTC 829
Query 830 AATCTCAGTCGAATGAAGCTTCTAATATGACAAAGAAAGACGGTTTGGATCTTGATATCG 889
||||| ||| ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 830 TGTCTCAACCGAGTGAAGCTTCTAATATGACAAATAAAGACGGTTTGGATCTTCATATCG 889
Query 890 GTTTGCCTCCACCTCTTCCACAAGCTACTACCGGAGCTACTGACTTGACTGGTCATGGCG 949
|||||||||||| | | |||||| |||||| |||||||||||||||||||||
Sbjct 890 GTTTGCCTCCAC-------A-A-GCTACT---GGAGCTTCTGACTTGACTGGTCATGGCG 937
Query 950 TTATTCATGTGAAATGA 966
|||||||||||||||||
Sbjct 938 TTATTCATGTGAAATGA 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5