BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496331

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61630.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   898    0.0  


> AT5G61630.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G07490.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:24773657-24774502 REVERSE LENGTH=590
Length=590

 Score =  898 bits (486),  Expect = 0.0
 Identities = 553/584 (95%), Gaps = 10/584 (2%)
 Strand=Plus/Plus

Query  1    ATGTATAGATCTGCGAGCTGGAACCGAGTGCCAGAAGACTACTCATCCGCACCGCCTAAG  60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTATAGATCCGCGAGCTGGAACCGAGTGCCAGAAGACTACTCATCCGCACCGCCTAAG  60

Query  61   GGATTGTGGATGGGCTCAGTGATCGGTCCCCTTGACGAGAACGAACTACCTTCCTACAAT  120
            ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   GGATTGTGGATGGGCTCGGTGATCGGTCCCCTCGACGAGAACGAACTACCTTCCTACAAT  120

Query  121  AATCCACCAGAGGAGATGGTTAAGAAGGAGAAGTCACGTGCCAAATTCGCAGAAAACGCT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  121  AATCCACCAGAGGAGATGGTTAAGAAGGAGAAGTCACGTGCCAAATTCGCAGAAAACGCC  180

Query  181  ATTCACATCATACCTTTTGTTCTCCTTGCATGCGCTCTCGTACTTTGGCTCTTCTCAAAT  240
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATTCACATCATACCATTTGTTCTCCTTGCATGCGCTCTCGTACTTTGGCTCTTCTCAAAT  240

Query  241  CCAGATGTGGATGTTGGGATGAGAGAAGAATCTATTGCAGCTAAGATTGAAGGATTGACG  300
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  241  CCAGATGTGGATGTTGGGATGAGAGAAGAATCTATTGCGGCTAAGATTGAAGGATTGACG  300

Query  301  ATCGAAGGAGACATCGATAACGACAGTGATGGAACTCAGACCGGTTTCTTGGGTGCAACC  360
            ||||||||||||||||| || || || ||||||||||||||||||||||||||||| |||
Sbjct  301  ATCGAAGGAGACATCGACAATGATAGCGATGGAACTCAGACCGGTTTCTTGGGTGCCACC  360

Query  361  TTAGAACTCGGAGATCCTGACAAACCAAACCTCACTGATAGGACCAGAAGAGCTTCAAGG  420
            ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct  361  TTAGAACTCGGAGATCCTGACAAACCAAACCTCACTGATAGAACCAGACGAGCTTCTAGG  420

Query  421  AAATTGATCAAACGTTTTTACTAGTTAA-CTAA-ACCAttttctttttctttt-tCCCAA  477
            |||||||||||| | ||||||||||||| | || |||||||| |||   |||| ||||||
Sbjct  421  AAATTGATCAAAGGATTTTACTAGTTAATC-AACACCATTTT-TTTAA-TTTTCTCCCAA  477

Query  478  TGAATGTTGATTTTAATCAATAAACTTTACCAAAACTATGAtttttt--gttttgttttt  535
            ||||||||||||||| ||||||||||| |||||||||| ||||||||  |||||||||||
Sbjct  478  TGAATGTTGATTTTACTCAATAAACTTCACCAAAACTAAGATTTTTTTTGTTTTGTTTTT  537

Query  536  GGT-GAATAAAGAAGCAGCTAAATATAAATCCAAATATATCTAT  578
            ||| || |||||||||||||||||||||||||||||||||||||
Sbjct  538  GGTTGA-TAAAGAAGCAGCTAAATATAAATCCAAATATATCTAT  580



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5