BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496338
Length=2346
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61700.1 | Symbols: ATATH16, ATH16 | ABC2 homolog 16 | chr5:... 1770 0.0
AT5G61740.1 | Symbols: ATATH14, ATH14 | ABC2 homolog 14 | chr5:... 675 0.0
AT3G47750.1 | Symbols: ATATH3, ABCA4 | ATP binding cassette sub... 363 6e-99
> AT5G61700.1 | Symbols: ATATH16, ATH16 | ABC2 homolog 16 | chr5:24793864-24797944
FORWARD LENGTH=2667
Length=2667
Score = 1770 bits (958), Expect = 0.0
Identities = 1019/1049 (97%), Gaps = 1/1049 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAATCCTAGTCCAGCAAGTTTTTGGACGCAAGCCAATGCGTTACTTAGGAAGAAC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGAATCCTAGCCCAGCAAGTTTTTGGACGCAAGCCAATGCGTTACTTAGGAAGAAC 60
Query 61 TTAACCTACCAGAGGAAACACATATGGACAAATGTTCGGCTCATCCTGGTTCCACTCTTC 120
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 61 TTAACCTACCAGAGGAAACACATATGGACGAATGTTCGACTCATCCTGGTTCCACTCTTC 120
Query 121 CTCTGTTTAATTCTGCTGGCGATTCAACAAGTGCTTGATGCCTTGATGAAGAGTGTCTCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 CTCTGTTTAATTCTGCTGGCGATTCAACAAGTGCTTGATGCCTTGATGAAGGGTGTCTCT 180
Query 181 GATATGTCTAATTGTGGAGGCAACGTTACTTTGCCTGGTGGTATCTGTCCCATCCCAAAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATATGTCTAATTGTGGAGGCAACGTTACTTTGCCTGGTGGTATCTGTCCCATCCCAAAC 240
Query 241 CCTCCACCGTTGCCTCCGATGTTGCAGATTCCACAACATGAACTCCGTTCCGTTAAGACC 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTCCATCGTTGCCTCCGATGTTGCAGATTCCACAACATGAACTCCGTTCCGTTAAGACC 300
Query 301 GATTTCTTTTCCTACAAAGATCTCCCTGACAAGTCATGCAGAGGAACAGGATCTTGTCCT 360
|||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct 301 GATTTCTTTTCCTACAAAGATCTCCCTGACAAGTTATGCAGAGAAACAGGTTCTTGTCCC 360
Query 361 GTAACGATACTTATCACTGGTGATAAACTGGCTCTTGGAAAAGCTTTATCCGCAAATATC 420
|||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 361 GTAACGATACTTTTCACTGGTGATAAACTGCCCCTTGGAAAAGCTTTATCCGCAAATATC 420
Query 421 TTCAGCACTTCTTTTGTGGTTAATTCCTCCGACCTCTTGCCTACTTTAGCCAATAACGTC 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCAGCACTTCTTTTGTGGTTAATTCCTCCGACCTCTTGCCTACTTTAGCCAATAACGTT 480
Query 481 TTGGGTTCAACAGAAGCAGCGGGGGAAGACAATTATGAAGACCCGGGGATTGCCTCAGAT 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 TTGGGTTCAACAGAAGCAGCGGGGGAAGACAATTATGAAGATCCGGGGATTGCCTCAGAT 540
Query 541 CTCCCTATTTACAGTATCCAACCTTCTTGCAGTGCAAACTCTACATGGCCACTCTCGCTC 600
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 CTTCCTATTTACAGTATCCAACCTTCGTGCAGTGCAAACTCTACATGGCCACTCTCGCTC 600
Query 601 GGACAAATTCAGACAGCGGTGAAGTGTGTTCAAGGGTTGTGTCTCTGGAGAAATAACTCT 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGACAAATTCAGACAGCCGTGAAGTGTGTTCAAGGGTTGTGTCTCTGGAGAAATAACTCT 660
Query 661 GTAGAGGTCAATGATGAGCTTTTCAAGGGTAGTTGGAGGGGAAACCCTGCGGGGATGACA 720
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 661 GTAGAGGTCAATGATGAGCTTTTCAAGGGTAGTTGGAGGGGAAATCCTGCGGGGATGCCA 720
Query 721 AATGAGATCGTTGCAGCATACGATCTCATGAGCACGGATAGGAAAAATTTCAATGTGACC 780
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 AATGAGATCGTTGCAGCATATGATCTCATGAGCACGGATAGGAAAAATTTCAATGTGACC 780
Query 781 ATATGGTATAACTCAACCTACAATGATGAGTTTTCAACTGGTCAGCCTTTAAAGCTGGTC 840
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 781 ATATGGTATAACTCAACCTACAATGATGAGTTTGCAACTGGTCAGGCTTTAAAGCTGGTC 840
Query 841 CGAGTTCCCCGCTCTATCAATCTGATATCAAATGCTTATCTTAAGTTTCTAAAAGGCCTT 900
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 841 CGAGTTCCCCGCTCTATTAATCTGATATCAAATGCTTATCTTAAGTTTCTAAAAGGCCCT 900
Query 901 GGGACAAGGATATTATTTGAGTTTCTCAAAGAAGTTCCTAAAAAAGAAACGAAAATGAAT 960
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 901 GGGACAAGGATATTATTTGAGTTTCTCAAAGAAGTTCCTAAAGAAGAAACTAAAATGAAT 960
Query 961 CAAGACATTGCGTCCTTGCTAGGCCCACTTTTCTTCACTTGGGTTGTTCTTCTTTTGTTC 1020
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 961 CAAGACATTGCGTCCTTGCTTGGGCCACTTTTCTTCACTTGGGTTGTTCTTCTTTTGTTC 1020
Query 1021 CCCGTGATCTTGACATCATTGGTG-ATGA 1048
||||| |||||||||||||||||| ||||
Sbjct 1021 CCCGTAATCTTGACATCATTGGTGTATGA 1049
Score = 965 bits (522), Expect = 0.0
Identities = 593/627 (95%), Gaps = 6/627 (1%)
Strand=Plus/Plus
Query 1099 GTCGTTGCTTACATATTGGTGTACGGAACTGGGCTCTTGGGTAGCTTTCTTTTCCAAAAA 1158
||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1225 GTCATTGCTTACATACTGGTGTACGGAACCGGGCTCTTGGGTAGCTTTCTTTTCCAAAAA 1284
Query 1159 ATGATTGAAAATCAGTCATTCCCGGAAGAATGGATTCTTGCCATGGAGTTGTATCCCGGC 1218
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1285 ATGATTGAAACTCAGTCATTCCCCGAAGAATGGATTCTTGCCATGGAGTTGTATCCCGGC 1344
Query 1219 TTTTCTCTGTACCGCGGGTTGTATGAGTTCTCGCAATATGCCTCCCGGGGAAACGGGATG 1278
|||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1345 TTTTCTCTATACCGCGGGTTGTATGAGTTCTCGCAATATGCATCCCGAGGAAACGGGATG 1404
Query 1279 AAGTGGCAAGATCTCAGTGATAGCGGAATGGGTGAAGTTTTCTGTATCATGTCAATAGAG 1338
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1405 AAGTGGCAAGATCTCAGTGATAGCGGAATGGGTGAAGTTTTCTGTATCATGTCAGTAGAG 1464
Query 1339 TGGTTTCTTGCTCTCATTGTAGCCTACTATATCGATCAGGTTTTCACATCCGGAAAGCAT 1398
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 TGGTTTCTTGCTCTCATAGTAGCCTACTATATCGATCAGGTTTTCACATCCGGAAAGCAT 1524
Query 1399 CCTTTCTTTTTCTTGGTGAACCCTTTCAAGAAA-CCTTCTTCCCTACCAAGGAGGCCTAC 1457
|||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct 1525 CCTTTCTTTTTCTTGGTGAACCTTTTCAA-AAGTCCTTCTTCCCTACCAAGGAGGCCTAC 1583
Query 1458 TGTGCAAAGGGTGGATTCTAAAAAAGTCTCCATAGATATAGAAAAACTTGATATCACTGA 1517
|||||||||| |||||||||||| ||| | ||||||||| || |||| |||| ||||| |
Sbjct 1584 TGTGCAAAGGTTGGATTCTAAAAGAGTATTCATAGATATGGACAAACATGATGTCACTCA 1643
Query 1518 GGAGAGGGAAA-AGGTTCAAAAATTGAGGAATGAAGGTAGCACAGGGCATGCGATCTTGT 1576
||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1644 AGAGAGGGAATCAG-TTCAAAAATTGAGGAATGAAGGTAGCACAGGGCATGCCATCTTGT 1702
Query 1577 GTGACAACCTGAAAAAGGTTTATCCAGGTAGAGATGGTAACCCGCCAAAAATGGCAGTAC 1636
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1703 GTGACAACTTGAAAAAGGTTTATCCAGGTAGAGATGGTAACCCGCCAAAAATGGCCGTAA 1762
Query 1637 GAGGGTTGTATCTCAGCGT-TCCTTCAGGAGAATGCTTCGGCATGCTTGGACCTAATGGT 1695
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 1763 GAGGGTTGTATCTCAGTGTGTC-TTCAGGAGAATGCTTCGGCATGCTTGGACCTAATGGT 1821
Query 1696 GCCGGCAAAACTTCCTTCATCAGTATG 1722
|||||||||||||||||||||||||||
Sbjct 1822 GCCGGCAAAACTTCCTTCATCAGTATG 1848
Score = 935 bits (506), Expect = 0.0
Identities = 557/582 (96%), Gaps = 2/582 (0%)
Strand=Plus/Plus
Query 1766 GAGTTGGCGACAAACCTGCTGGTAATTACAGTGGAGGTATGAAAAGGAGGCTTAGCGTGG 1825
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2087 GAGTTGGCGACAAACCTGCTGGTAATTATAGTGGAGGTATGAAAAGGAGGCTTAGCGTGG 2146
Query 1826 CCATATCGCTTATCGGGAACCCCAAGGTGGTTTATTTAGATGAGCCAAGCACAGGACTTG 1885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CCATATCGCTTATCGGGAACCCCAAGGTGGTTTATTTAGATGAGCCAAGCACAGGACTTG 2206
Query 1886 ATCCAGCCTCGAGGAAGAATTTATGGAATGTGATCAAGCGTGCAAAACAAAACACAGCAA 1945
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2207 ATCCAGCCTCGAGAAAGAATTTATGGAATGTGATCAAGCGTGCAAAACAAAACACAGCAA 2266
Query 1946 TAATTCTCACAACTCACTCGATGGAAGAAGCCGAATTTCTATGCGATAGATTGGGAATTT 2005
|||||||||||||||| || |||||||||||||||||||||||||| ||||| |||||||
Sbjct 2267 TAATTCTCACAACTCATTCCATGGAAGAAGCCGAATTTCTATGCGACAGATTAGGAATTT 2326
Query 2006 TTGTAGACGGAGGCTTGCAATGCATAGGAAACTCTAAGGAACTGAAGAGCAGATACGGTG 2065
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 2327 TTGTCGACGGAGGCTTGCAATGCATAGGAAACTCCAAGGAACTGAAGAGCAGGTACGGTG 2386
Query 2066 GATCATATGTCTTCACGATGACAACATCTTCAAATCATGAGGAAGAGGTAGAGAGATTGG 2125
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2387 GATCATATGTCTTCACAATGACAACATCTTCAAAACATGAGGAAGAGGTAGAGAGATTGG 2446
Query 2126 TTGAATCTATCTCTCCCAACGCCAAGAAGATATATCACCTTGCTGGTACTCAGAAATTCG 2185
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2447 TTGAATCTGTCTCTCCCAACGCCAAGAAGATATATCACCTTGCTGGTACTCAGAAATTTG 2506
Query 2186 AGCTCCCAAAGCAAGAGGTTCGGATTGCTGAGGTGTTTCGCGCTGTTGAAAAGGCCAAAT 2245
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2507 AGCTCCCAAAGCAAGAGGTTCGAATTGCTGAGGTGTTTCGCGCTGTTGAAAAGGCCAAAG 2566
Query 2246 C-ATCCTTCACAGTCTTTGCCTGGGGACTCGCGGACACAACTCTCGAAGATGTCTTCATC 2304
| | | |||||||||||||| ||||| ||||| |||||||| |||||||||||||| |||
Sbjct 2567 CCAAC-TTCACAGTCTTTGCATGGGGGCTCGCCGACACAACGCTCGAAGATGTCTTTATC 2625
Query 2305 AAAGTTGCTAGAACTGCTCAAGCCTTCATTTCCTTGTCTTAA 2346
||||| |||||||||||||||||||||||||| |||||||||
Sbjct 2626 AAAGTCGCTAGAACTGCTCAAGCCTTCATTTCTTTGTCTTAA 2667
> AT5G61740.1 | Symbols: ATATH14, ATH14 | ABC2 homolog 14 | chr5:24808484-24812597
FORWARD LENGTH=2547
Length=2547
Score = 675 bits (365), Expect = 0.0
Identities = 718/885 (81%), Gaps = 38/885 (4%)
Strand=Plus/Plus
Query 179 CTGATATGTCTAATTGTGG-AGGCAACG-TTACTTTGCCTGGTGGT-ATCTGTCCCATCC 235
||||| || |||| ||||| || ||| | | | ||| || |||| || ||||||||||
Sbjct 77 CTGATTTGACTAAGTGTGGAAGTCAA-GATGA-TTTTTCTATTGGTGAT-TGTCCCATCC 133
Query 236 CAAACCCTCCACCGTTGCCTCCGATGTTGCAGATTCCACAACATGAACTC-CGTTCCGTT 294
|||||||||||| ||||||||| |||| ||||||||| ||| |||| || ||| | | |
Sbjct 134 CAAACCCTCCACTGTTGCCTCCCCTGTTACAGATTCCAGAACCTGAA-TCTCGTGCTG-T 191
Query 295 AAGAC--CGATTTCTTTTCCTACAAAGATCTCCCTGACAAGTCATGCAGAGGAACAGGAT 352
|| | | ||||||||| ||||| || || ||||| ||||| || ||| ||| |||
Sbjct 192 CAG-CGGTGGTTTCTTTTCGTACAATGACCTTCCTGATAAGTCTTGTAGAAAAACTGGAA 250
Query 353 CTTGTCCTGTAACGATACTTATCACTGGTG-ATAAAC-TGGCTCTTGGAAAAGCTTTATC 410
|||||||||| || |||||| | ||||| | |||| | | | ||||| ||||||||||
Sbjct 251 CTTGTCCTGTTACTATACTTCTTACTGG-GAATAACCAT-TCCCTTGGTCAAGCTTTATC 308
Query 411 CGCAAATATCTTCAGCACTTCTTTTG-TGGTTAATTCCTCCGACCTCTTGCCTACTTTAG 469
| ||||| || | ||| |||| | || |||||||| ||||||||| ||| |||||
Sbjct 309 TGGGAATATGTTTGGTGGTTCGTTTGCT-GTGAATTCCTCTGACCTCTTGTCTAGTTTAG 367
Query 470 CCAATAACGTCTTGGGTTCAACAGAAGCAGCGGGGGA-AGACAATTATGAAGA-CCCGGG 527
|| |||| ||||||||||||||| |||| | || | | ||||||||| ||| ||| ||
Sbjct 368 CCTATAATGTCTTGGGTTCAACACTAGCA-CTAGGCACAAACAATTATGCAGATCCC-GG 425
Query 528 GATTGCCTCAGATCTCCCTATTTACAGTATCCAACCTTC-TTGCAGTGCAAACTCTACAT 586
||||| || ||| | ||||| |||||||||||| | || |||||| ||||||||||||
Sbjct 426 GATTGAGTCGGATTTTCCTATCTACAGTATCCAATC-TCAGTGCAGTCCAAACTCTACAT 484
Query 587 GGCCACTCTCGCTCGGACAAATTCAGACAGCGGTGAAGTGTGTTCAAGGGTTGTGTCTCT 646
|||||||||| | ||| ||||||| |||||||||| |||| |||||||||||| ||| |
Sbjct 485 GGCCACTCTCATTTGGAAAAATTCATACAGCGGTGACGTGTCTTCAAGGGTTGTCTCTAT 544
Query 647 GGAGAAATAACTCTGTAGAGGTCAATGATGAGCTTTTCAAGGGTAGTTGGAGGGGAAACC 706
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 545 GGAGAAATAACTCTGTAGAGGTCAATGATGAGCTTTTCAAGGGTAATTGGAAGGGAAATC 604
Query 707 CTGCGGGGATGACAAATGAGATCGTTGCAGCATACGATCTCATGAGCACGGATAGGAAA- 765
||| | |||||||||||||||| | ||||||||| |||||| ||| |||||||| |||
Sbjct 605 CTGAGAGGATGACAAATGAGATTGCTGCAGCATATGATCTCTTGAATACGGATAG-AAAC 663
Query 766 AATTTCAATGTGACCATATGGTATAACTCAACCTACAATGATGAGTTTTCAACTGGTCAG 825
|| ||| ||||||| || |||||||||||||| ||| |||||| ||||| || ||
Sbjct 664 AACTTCGATGTGACGATCTGGTATAACTCAACAAACATTGATGACCCTTCAAG-GG-CA- 720
Query 826 CCTTTAAAGCTGGTCCGAGTTCCCCGCTCTA-TCAATCTGATATCAAATGCTTATCTTAA 884
||||| | | || ||||||| |||| | |||||||| |||||||||||||||||||
Sbjct 721 CCTTTG--G-T--TC-GAGTTCCTCGCT-TGCTCAATCTGGTATCAAATGCTTATCTTAA 773
Query 885 GTTTCTAAAAGGCCTTGGGACAAGGATATTATTTGAGTTTCTCAAAGAAGTTCCTAAAAA 944
|||||| ||||||| ||||| ||||||||||| |||||| ||||||||||||||||| |
Sbjct 774 GTTTCTTAAAGGCCCCGGGACGAGGATATTATTCGAGTTTGTCAAAGAAGTTCCTAAACA 833
Query 945 AGAAACGAAAATGAATCAAGACATTGCGTCCTTGCTAGGCCCACTTTTCTTCACTTGGGT 1004
|||| ||| | |||| || || || ||| |||||||||| ||||| |||||||||||
Sbjct 834 CCAAACTAAATTCAATCTTGATATCGCTTCCATGCTAGGCCCGCTTTTTTTCACTTGGGT 893
Query 1005 TGTTCTTCTTTTGTTCCCCGTGATCTTGACATCATTGGTG-ATGA 1048
|||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 894 TGTTCTTCTTCTATTCCCCGTGATCTTGACATCATTGGTGTATGA 938
Score = 429 bits (232), Expect = 6e-119
Identities = 506/633 (80%), Gaps = 39/633 (6%)
Strand=Plus/Plus
Query 1102 GTTGCTTACATATTGGTGTACGGAACTGGGCTCTTGGGTA-GCTTTCT-TTTCCAAAAAA 1159
|||||||| | |||||||| | || |||||||||||| | | ||||| ||| ||
Sbjct 1123 GTTGCTTATACATTGGTGTTTGCAAGTGGGCTCTTGGGAATG-TTTCTCTTT-GGTGAAC 1180
Query 1160 TGATTGAAAATCAGTCATTCCCGGAAGAATGGATTCTTGCCATGGAGTTGTATCCCGGCT 1219
|| ||||| || ||||||| ||| || |||||||||| ||||||||||||||||||
Sbjct 1181 TGCTTGAATCTCCCACATTCCCCGAAAAAGGGATTCTTGCTTTGGAGTTGTATCCCGGCT 1240
Query 1220 TTT-CTCTGTACCGCGGGTTGTATGAGTTCTCGCAATATGCCTCCCGGGGAAACGGGATG 1278
||| || | | |||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1241 TTTCCT-TATTCCGCGGATTGTATGAGTTCGCGCAATATGCCTCCCGGGGAAACGGGATG 1299
Query 1279 AAGTGGCAAGATCTCA-GTGATAGCGGAATGGGTGAAGTT-TTCTGTATCATGTCAATAG 1336
|||||| ||||||||| | || |||||||||| | ||| | |||| ||||||| | |
Sbjct 1300 AAGTGGAAAGATCTCAAG-GAAAGCGGAATGGAT-AAGCTGTTCTACCTCATGTCTGTGG 1357
Query 1337 AGTGGTTTCTTGCT-CTCATTGTAGCCTACTATATCGATCAGGTTT-TCACATCCGG-A- 1392
|||||||| | | | |||||||| ||||||| |||||||| ||| | |||| || |
Sbjct 1358 AGTGGTTTGT-GATTCTCATTGTGGCCTACTCTATCGATCTTCTTTCTT-CATCAGGGAG 1415
Query 1393 AAGCATCCTTTCTTTTTCTTGGTGAACCCTTTCAAGAAACCTTCTTCCCTACCAAGGAGG 1452
|||| |||||| ||||||| | |||||| | ||||||||||||||
Sbjct 1416 AAGC--CCTTTCGTTTTCTT------C------AAGAAATCATCTTCCCTACCAAGT--- 1458
Query 1453 CCTACTGTGCAAAGGGTGGATTCTAAAAAAGT-CTCCATAGATATAGAAAAA-CTTGATA 1510
|||| ||| |||||| | ||| |||| || ||| || || || |||||| | |||
Sbjct 1459 CCTAGTGTTCAAAGGCAAAACTCTGAAAACGTTCTC-ATTGACATGGAAAAAACA-GATG 1516
Query 1511 TCACTGAGGAGAGGGAAAAGGTTCAAAAATTGAGGAATGAAGGTAGCACAGGGCATGCGA 1570
||||| ||||| ||||||| ||| | ||||||||||| ||||| | ||| ||||||||||
Sbjct 1517 TCACTCAGGAGCGGGAAAAAGTTGAGAAATTGAGGAAAGAAGGGACCACGGGGCATGCGA 1576
Query 1571 TCTTGTGTGACAACCTGAAAAAGGTTTATCCAGGTAGAGATGGTAACCCGCCAAAAATGG 1630
|| |||||||||||||||| ||||| ||||||||||| ||||||||||||||||| | |
Sbjct 1577 TCGTGTGTGACAACCTGAAGAAGGTGTATCCAGGTAGCGATGGTAACCCGCCAAAGCTAG 1636
Query 1631 CAGTACGAGGGTTGTATCTC-AGCGTTCCTTCAGGAGAATGCTTCGGCATGCTTGGACCT 1689
||||| ||||||| |||||| | ||| ||||||||||||||||| |||||||||||||||
Sbjct 1637 CAGTAAGAGGGTTATATCTCGA-CGTGCCTTCAGGAGAATGCTTTGGCATGCTTGGACCT 1695
Query 1690 AATGGTGCCGGCAAAACTTCCTTCATCAGTATG 1722
||||||||||| ||||| || ||||||| ||||
Sbjct 1696 AATGGTGCCGGAAAAACCTCTTTCATCAATATG 1728
> AT3G47750.1 | Symbols: ATATH3, ABCA4 | ATP binding cassette subfamily
A4 | chr3:17606427-17610889 FORWARD LENGTH=2844
Length=2844
Score = 363 bits (196), Expect = 6e-99
Identities = 446/565 (79%), Gaps = 24/565 (4%)
Strand=Plus/Plus
Query 1777 AAACCTGCTGGTAATTACAGTGGAGGTATGAAAAGGAGGCTTAGCGTGGCCATATCGCTT 1836
||||||||||| || || |||||||| ||||||||| | || || || || || || |||
Sbjct 2275 AAACCTGCTGGGAAATATAGTGGAGGCATGAAAAGGCGACTAAGTGTAGCTATTTCACTT 2334
Query 1837 ATCGGGAA-CCCCAAGGTGGTTTATTTAGATGAGCCAAGCACAGGACTTGATCCAGCCTC 1895
|| |||| || |||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 2335 AT-TGGAAGTCCTAAGGTGGTTTATATGGATGAGCCAAGCACAGGACTTGATCCAGCTTC 2393
Query 1896 GAGGAAGAATT-TATGGA-ATG-TGATCAA-GCGTGCAAAACAAA-ACACAGCAATAATT 1950
|| ||| | |||||| | | | ||||| | | |||||| ||| |||| |||||||||
Sbjct 2394 AAG-AAGGAGCCTATGGACA-GCT-ATCAAAG-GCGCAAAA-AAACACACTGCAATAATT 2448
Query 1951 CTCACAACTCACTCGATGGAAGAAGCCGAATTTCTATGCGATAGATTGGGAATTTTTGTA 2010
||||| |||||||| ||||||||||| || ||||| ||||| ||||| || |||||||||
Sbjct 2449 CTCACTACTCACTCAATGGAAGAAGCAGAGTTTCTCTGCGACAGATTAGGCATTTTTGTA 2508
Query 2011 GACGGA-GGCTTGCAATGCATAGGAAACTCTAAG-GAACTGAAGAGCA-GATACGGTGGA 2067
|||||| || || |||||| |||| || || || || || ||| ||| | || ||||||
Sbjct 2509 GACGGAAGG-TTACAATGCGTAGGGAA-TCCAAAAGAGCTAAAG-GCAAGGTATGGTGGA 2565
Query 2068 TCATATGTCTTCACGATGACAACATCTTCA-AATCATGAGGAAGAGGTAGAGA-GATTGG 2125
|| ||||| || || ||||||||||| ||| || ||||| |||| || |||| | ||
Sbjct 2566 TCTTATGTGTTAACAATGACAACATCATCAGAA-CATGAAAAAGATGTGGAGATG-TTAA 2623
Query 2126 TTGAATCTATCTCTCCCAACGCCAAGAAGATATATCACCTTGCTGGTACTCAGAAATTCG 2185
|| || | | ||||| ||||||||||| ||||||||| | || || || || ||||| |
Sbjct 2624 TTCAAGATGTTTCTCCAAACGCCAAGAAAATATATCACATCGCAGGGACACAAAAATTTG 2683
Query 2186 AGCTCCCAAA-GCAAGAGGTTCGGATTGCTGAGGTGTTTCGCGCTGTTGAAAAGGCCAAA 2244
|| ||||||| | | || |||||||| || || |||||| ||||| || ||||| |||
Sbjct 2684 AGATCCCAAAAG-ACGAAGTTCGGATCGCAGAATTGTTTCAAGCTGTGGAGAAGGCAAAA 2742
Query 2245 TCATCCTTCACAGTCTTTGCCTGGGGACTCGCGGACACAACTCTCGAAGATGTCTTCATC 2304
| || | || ||||| |||||||| || ||||||||||| |||||||| |||||
Sbjct 2743 GGAAATTTTAGGGTGTTTGCTTGGGGACTTGCAGACACAACTCTTGAAGATGTTTTCATT 2802
Query 2305 AAAGTTGCTAGAACTGCTCAAGCCT 2329
|| ||||||||||||||||| ||||
Sbjct 2803 AAGGTTGCTAGAACTGCTCAGGCCT 2827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116465264400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5