BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496339
Length=1327
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61720.1 | Symbols: | Protein of unknown function (DUF1216)... 1917 0.0
> AT5G61720.1 | Symbols: | Protein of unknown function (DUF1216)
| chr5:24801554-24803169 FORWARD LENGTH=1403
Length=1403
Score = 1917 bits (1038), Expect = 0.0
Identities = 1159/1218 (95%), Gaps = 6/1218 (0%)
Strand=Plus/Plus
Query 1 TCGTTTCCCTGTACCTC-TTTAAGAAT--aaaaaagaaaaa-aaatgggaaaaaTTTCGT 56
|||||| |||||||||| ||||||||| |||||| ||||| |||||||||||||||| |
Sbjct 24 TCGTTTTCCTGTACCTCTTTTAAGAATAAAAAAAAAAAAAAGAAATGGGAAAAATTTCAT 83
Query 57 TAGCGGTATGTCTAACGTTGCTTGTCACATTAAGCACTGTTTATGAAACACAAGGGACGT 116
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 TAGCGATATGTCTAACGTTGCTTGTCACATTAAGCACTGTTTATGAAACACAAGGGACGT 143
Query 117 TCTCATTACCCCTTTACTTGAAAAATTTCCCCAAAGTGGGCAAAGACTATGAGGCTTTCG 176
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 144 TCTCATTACCCCTTTACTTGAAAAATTTCCCCAAACTGGGCAAAGACTATGAGGCTTTCG 203
Query 177 CAAACAAAGGTATATCGGACTTCTTGGGTGAACTGGAGGGTATGTGTCCTAAAACCGCAG 236
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 204 CAAACAAAGGTATATCGGACTTTTTGGGTGACCTAGAGGGTATGTGTCCTAAAACCGCAG 263
Query 237 AGTTCAAGGATTTCTTTGAAAAGTTGAAGGATTACATGGCCTCCTTCAATTCGGCATCAC 296
|||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| |||
Sbjct 264 AGTTCAAGGATTTCTTTGAAAACTTGAAGGATTACATGGCCTTCTTCAATTCAGCAGCAC 323
Query 297 CCGGGTCAAAAGACAACCTGTTCGAGATGT-CAGTAAAATCTGAAAAGCTGTTCAAGGCT 355
|||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 324 CCGGGTCAAAAGACAACCAGTTCGAGATGTTC-GTAAAATCTGAAAAGCTGTTCAAGGCT 382
Query 356 ATGTCTGCTTTCAACAGTAGTAACGGCGGAACATCAGAGGATTCGTGGAAGCTGGTGGAT 415
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 383 TTGTCTGCTTTCAACAGTAGTAAAGGCGGAACATCAGAGGATTCGTGGAAGCTGGTGGAT 442
Query 416 GGCTTGTTGTCAATGGGTAAAGGTTTGGTTGAGATGAAGAAGAGCGGTTCGAAGGAGATA 475
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 GGATTGTTGTCAATGGGTAAAGGTTTGGTTGAGATGAAGAAGAGCGGTTCGAAGGAGATA 502
Query 476 ACTTTTGAACAGAGAAGAGATCTGATCAGTTCTATGGTGAAATGGGCTAGAGCTATCGGT 535
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 503 ACTTTTGAAGAGAGAAGAGATCTGATCAGTTCTATGGTGAAATGGGCTAGAGCCATCGGT 562
Query 536 CTATTCGTGAAGGCGGCCTCTGAAGATAAAGGACAATCTATTGATCTGGCATCTTTTGGG 595
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 563 CTATTCGTGAAGGCGGCCTCTGAAGATAAAGGACAGTCTATTGATCTGGCATCTTTTGGG 622
Query 596 ATCGACTATGACAACCATGTAGAATCCCCTTTTTCAAAAAGAGCTATGTATGAAAAACAA 655
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 623 ATTGACTATGACAACAATGTAGAATCCCCTTTTTCAAAAAGAGCTATGTATGAAACACAA 682
Query 656 GGAACGTTCTCATTACCCCATTACTTGAAGAATGCCCCCAAAATGGGCAAAGACATTGAG 715
||||||||||||||||| |||||| |||||||| |||||||||||||||||| |||||||
Sbjct 683 GGAACGTTCTCATTACCTCATTACGTGAAGAATACCCCCAAAATGGGCAAAGCCATTGAG 742
Query 716 CCTTTCGCTTACAATGGTATGTCGGACTTCTTGGGTAGCCTAGAGAGTAAGTGTCCTGCG 775
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 743 CCTTTCGCTTACAAAGGTATGTCGGACTTCTTGGGTAGCCTAGAGAGCAAGTGTCCTGCG 802
Query 776 ACACCAGAGTTCCAGGATTTCTTTGTAAAGCTGGAGGACTACATGGCCTGCTTCAAGTTG 835
|||||||||||| | ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 803 ACACCAGAGTTCAAAGATTTCTTTGTAAAGTTGGAGGACTATATGGCCTGCTTCAAGTTG 862
Query 836 GTATCACCCGAATCAAAAGACGACATGTCAGTGAAATCTGAGAAGCTCTTCAGGGCTATG 895
|||||||||||||||||| ||| ||| |||||||||| || |||||||||| |||||||
Sbjct 863 GTATCACCCGAATCAAAATTCGAGATGGCAGTGAAATCGGATAAGCTCTTCACGGCTATG 922
Query 896 ATTTTATTGGATGGTACTAAAGGCGGAACAGTGGATTCGTGGAGGATGCTTGATGGTATG 955
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 923 ATTTCATTGGATGGTACTAAAGGCGGATCAGTGGATTCGTGGAGGATGCTTGATGGTATG 982
Query 956 TTGTCAATGGGAAAAGTTTTGGTTGAGATGAAGAAGAGCGGTTCCAAGGAGATAACTTTT 1015
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 983 TTGTCAATGGGAAAAGTTTTGGTTGATATCAAGAAGAGCGGTTCCAAGGAGATAACTTTT 1042
Query 1016 GAACAGAGAAGAGATCTGATCAGTTCTATGGTGAAATGGGCTAGAGCTATCGGTCTATTC 1075
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1043 GAACAGAGAAGAGATCTGATCAGCTCTATGGTGAAATGGGCTAGAGCTATCGGCCTATTC 1102
Query 1076 GTGAAGACGGCCTCTGGGAATAAAGGAAAACCTATTGATCTAGCACCTTTTGGAATTGAT 1135
|||||| ||||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 1103 GTGAAGGCGGCCTCTGAGCGTAAAGGAAAATCTATTGATCTAGCACCTTTTGGAATTGAT 1162
Query 1136 TATGAAAACAATGTCGGAAATGGGAAAGGTAACTATAGAACCGGCCCTGTTCTGATAGAC 1195
||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||
Sbjct 1163 TATGAAAACAATGTCGGAAATGGAAAAGGTAACTTTAGAACCGGCCCTGTTCTCATAGAC 1222
Query 1196 GACGGCAGCGAGCTCTAA 1213
||||||||||||||||||
Sbjct 1223 GACGGCAGCGAGCTCTAA 1240
Score = 442 bits (239), Expect = 4e-123
Identities = 437/528 (83%), Gaps = 32/528 (6%)
Strand=Plus/Plus
Query 644 TATGAAAAACAAGGAACGTTCTCATTACCCCATTACTTGAAGAATGCCCCCAAAATGGGC 703
||||||| |||||| |||||||||||||||| ||||||||| ||| ||||||| |||||
Sbjct 125 TATGAAACACAAGGGACGTTCTCATTACCCCTTTACTTGAAAAATTTCCCCAAACTGGGC 184
Query 704 AAAGACAT-TGAGCCTTTCGCTTACAATGGTATGTCGGACTTCTTGGGTAG-CCTAGAGA 761
|||||| | |||| ||||||| |||| ||||| |||||||| |||||| | |||||||
Sbjct 185 AAAGAC-TATGAGGCTTTCGCAAACAAAGGTATATCGGACTTTTTGGGT-GACCTAGAGG 242
Query 762 GTAAGTGTCCTGCGACAC-CAGAGTTCCAGGATTTCTTTGTAAAGC-TGGAGGACTACAT 819
||| ||||||| || | |||||||| |||||||||||| ||| | || |||| |||||
Sbjct 243 GTATGTGTCCTAAAAC-CGCAGAGTTCAAGGATTTCTTTG-AAAACTTGAAGGATTACAT 300
Query 820 GGCCTGCTTCAAGTT-GGTATCACCCGAATCAAAAGACGA-CATG-TC---A-G-T-G-- 868
||||| |||||| || | | |||||| ||||||||| | || | || | | | |
Sbjct 301 GGCCTTCTTCAA-TTCAGCAGCACCCGGGTCAAAAGACAACCA-GTTCGAGATGTTCGTA 358
Query 869 AAATCTGAGAAGCTCTTCAGGGCTATGAT-T-TTATTGGATGGTACTAAAGGCGG-A-A- 923
|||||||| ||||| |||| |||| || | | | || | ||| ||||||||| | |
Sbjct 359 AAATCTGAAAAGCTGTTCAAGGCTTTG-TCTGCT-TTCAACAGTAGTAAAGGCGGAACAT 416
Query 924 CAGTGGATTCGTGGAGGATGCTTGATGGTA-TGTTGTCAATGGGAAAAGTTTTGGTTGAG 982
||| ||||||||||| | || | ||||| | ||||||||||||| |||| ||||||||||
Sbjct 417 CAGAGGATTCGTGGAAGCTGGTGGATGG-ATTGTTGTCAATGGGTAAAGGTTTGGTTGAG 475
Query 983 ATGAAGAAGAGCGGTTCCAAGGAGATAACTTTTGAACAGAGAAGAGATCTGATCAGTTCT 1042
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 476 ATGAAGAAGAGCGGTTCGAAGGAGATAACTTTTGAAGAGAGAAGAGATCTGATCAGTTCT 535
Query 1043 ATGGTGAAATGGGCTAGAGCTATCGGTCTATTCGTGAAGACGGCCTCTGG-GAATAAAGG 1101
|||||||||||||||||||| |||||||||||||||||| ||||||||| || ||||||
Sbjct 536 ATGGTGAAATGGGCTAGAGCCATCGGTCTATTCGTGAAGGCGGCCTCTGAAGA-TAAAGG 594
Query 1102 AAAACCTATTGATCTAGCACCTTTTGGAATTGATTATGAAAACAATGT 1149
| | |||||||||| ||| ||||||| ||||| ||||| ||||||||
Sbjct 595 ACAGTCTATTGATCTGGCATCTTTTGGGATTGACTATGACAACAATGT 642
Score = 442 bits (239), Expect = 4e-123
Identities = 434/525 (83%), Gaps = 26/525 (5%)
Strand=Plus/Plus
Query 98 TATGAAACACAAGGGACGTTCTCATTACCCCTTTACTTGAAAAATTTCCCCAAAGTGGGC 157
|||||||||||||| |||||||||||||| | |||| |||| ||| ||||||| |||||
Sbjct 671 TATGAAACACAAGGAACGTTCTCATTACCTCATTACGTGAAGAATACCCCCAAAATGGGC 730
Query 158 AAAGACTA-TGAGGCTTTCGCAAACAAAGGTATATCGGACTTCTTGGGTGA-ACTGGAGG 215
|||| | | |||| ||||||| |||||||||| ||||||||||||||| | || |||
Sbjct 731 AAAG-CCATTGAGCCTTTCGCTTACAAAGGTATGTCGGACTTCTTGGGT-AGCCTAGAGA 788
Query 216 GTATGTGTCCTAAAAC-CGCAGAGTTCAAGGATTTCTTTGAAAAGTTGAAGGATTACATG 274
| | ||||||| || | |||||||||| |||||||||| ||||||| |||| || |||
Sbjct 789 GCAAGTGTCCTGCGACAC-CAGAGTTCAAAGATTTCTTTGTAAAGTTGGAGGACTATATG 847
Query 275 GCCTCCTTCAA-TTCGGCATCACCCGGGTCAAAAGACAACCTGTTCGAGATGTCAGTAAA 333
|||| |||||| || || |||||||| || | | || ||||||||| |||| ||
Sbjct 848 GCCTGCTTCAAGTT-GGTATCACCCGAATC---A-A-AA----TTCGAGATGGCAGTGAA 897
Query 334 ATCTGAAAAGCTGTTCAAGGCTATG-TCTGCTTTCAACAGTAGTAACGGCGGAACATCAG 392
||| || ||||| |||| ||||||| | | | || | ||| ||| ||||| |||||
Sbjct 898 ATCGGATAAGCTCTTCACGGCTATGAT-TTCATTGGATGGTACTAAAGGCGG---ATCAG 953
Query 393 AGGATTCGTGGAAGCTGGTGGATGGCT-TGTTGTCAATGGGTAAAGGTTTGGTTGAGATG 451
||||||||||| | || | ||||| | ||||||||||||| |||| ||||||||| ||
Sbjct 954 TGGATTCGTGGAGGATGCTTGATGG-TATGTTGTCAATGGGAAAAGTTTTGGTTGATATC 1012
Query 452 AAGAAGAGCGGTTCGAAGGAGATAACTTTTGAACAGAGAAGAGATCTGATCAGTTCTATG 511
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1013 AAGAAGAGCGGTTCCAAGGAGATAACTTTTGAACAGAGAAGAGATCTGATCAGCTCTATG 1072
Query 512 GTGAAATGGGCTAGAGCTATCGGTCTATTCGTGAAGGCGGCCTCTGAA-GATAAAGGACA 570
||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
Sbjct 1073 GTGAAATGGGCTAGAGCTATCGGCCTATTCGTGAAGGCGGCCTCTGAGCG-TAAAGGAAA 1131
Query 571 ATCTATTGATCTGGCATCTTTTGGGATCGACTATGACAACCATGT 615
|||||||||||| ||| ||||||| || || ||||| ||| ||||
Sbjct 1132 ATCTATTGATCTAGCACCTTTTGGAATTGATTATGAAAACAATGT 1176
Score = 130 bits (70), Expect = 4e-29
Identities = 105/120 (88%), Gaps = 10/120 (8%)
Strand=Plus/Plus
Query 1214 ATATGGAGACAGCCCTGCTTTGTTAAACAGCAGCGAGCTGTAGAACATTTTTGGCTATAT 1273
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 1288 ATATGGAGACAGCCCTGCTTTGTTAAACAGCAGCGTGCTGTAGAACATTTTTGGTTAT-T 1346
Query 1274 -TATAAACTAATAAACTAATCATATT--TATAA-AAA-T-ATTACAAATCTTAACTCGTT 1327
|| |||||| || |||||||||| || || ||| | ||||||||||||||||||||
Sbjct 1347 GTAAAAACTA-TAT--TAATCATATTACTAAAATAAAATTATTACAAATCTTAACTCGTT 1403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65310909045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5