BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496341
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61750.1 | Symbols: | RmlC-like cupins superfamily protein ... 965 0.0
> AT5G61750.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:24812804-24813436 REVERSE LENGTH=633
Length=633
Score = 965 bits (522), Expect = 0.0
Identities = 593/628 (94%), Gaps = 2/628 (0%)
Strand=Plus/Plus
Query 7 TTCTTCGTCGTGATCGTGTTTTGTGCAAACTTCTTATATGTCTCTGCGGATTCGGACAAT 66
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 7 TTCTTCGTCGTGATCGTGTTTTGTGCAATCTTCTTATCTGTCTCTGGGGATTCGGACAAT 66
Query 67 ATGCAGGACACATGTCCGACTGCTCCGGGAGAACAGAGCATTTTCTTCATCAACGGCTAT 126
||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 67 ATGCAGGACACATGTCCCACGGCTCCGGGAGAACAGAGCATCTTCTTCATCAACGGCTAT 126
Query 127 CCTTGCAAGAACCCGACCCAGATTAACGCTCAGGATTTCAAGTCCACCAAACTTACAGTA 186
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 127 CCTTGCAAGAACCCGACCAAGATTACCGCTCAGGATTTCAAGTCCACCAAACTTACAGAA 186
Query 187 GCTGGAGACACAGACAATTATCTCCAGTCGAGCGTCACATTGCTCACTGCATCAGGGTTT 246
|||||||| |||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 187 GCTGGAGATACAGACAATTATCTCCAGTCGAATGTCACATTGCTCACTGCATTAGAGTTT 246
Query 247 CCAGGTCTCAACACTCTTGGCCTCTCCGTCTCAAGGACTGATCTTGAAAGGGACGGATCT 306
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 247 CCAGGTCTCAACACTCTTGGCCTCTCGGTCTCACGGACTGATCTTGAAAGGGACGGATCT 306
Query 307 GTGCCGTTCCATTCGCATCCGAGGTCATCCGAGCTTCTCTTTGTGGTCAAAGGAGTCGTG 366
||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 307 GTGCCGTTCCATTCGCATCCGAGGTCATCTGAGATGCTCTTTGTGGTCAAAGGAGTCGTG 366
Query 367 TTTGCTGGATTTGTGGATACTAACAACAAGATTTTTCAAACAGTTCTGCGAAAAGGCGAT 426
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 367 TTTGCTGGATTTGTGGATACTAACAACAAGATTTTTCAAACGGTTCTGCAAAAAGGCGAT 426
Query 427 GTTTTTGTCTTCCCCAAAGGATTGCTTCATTTCTGCTTGAGCGGTGG-TTTCGAACGAGC 485
|||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 427 GTTTTTGTCTTCCCTAAAGGATTGCTTCATTTCTGCTTGAGCGGTGGCTTT-GAACCAGC 485
Query 486 CACCGCTTTCTCGTTCTACAATAGCCAAAATCCTGGAGTCGTGAATATTGGAGGAGTTTT 545
||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 486 CACCGCTTTCTCGTTTTACAATAGCCAGAATCCTGGAGTCGTGAATATTGGAGAAGTTTT 545
Query 546 TGGGATCGATCAAGAGCATATAAAGAACATGACGAGGTCTTTAGTTACTGGCTCTGGCTC 605
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 546 TGGGATCGATCAAGAGCATATAAAGATCATGACGAGGTGTTTAGCTACTGGCTCTGGCTG 605
Query 606 TAGAGTCACCAACGGTGATGAGCTTTAG 633
||| ||||| |||||||||||||||||
Sbjct 606 TAGGGTCACTGACGGTGATGAGCTTTAG 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5