BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496347
Length=1913
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61790.1 | Symbols: CNX1, ATCNX1 | calnexin 1 | chr5:2482710... 3044 0.0
AT5G07340.2 | Symbols: | Calreticulin family protein | chr5:23... 1459 0.0
> AT5G61790.1 | Symbols: CNX1, ATCNX1 | calnexin 1 | chr5:24827102-24829791
REVERSE LENGTH=2034
Length=2034
Score = 3044 bits (1648), Expect = 0.0
Identities = 1797/1866 (96%), Gaps = 21/1866 (1%)
Strand=Plus/Plus
Query 42 TTCACGAAGGA-TTTT-TTCCGATCTAGTTCTCCGG-TTATTCACCGATTTAGATCTAAT 98
||||||| ||| |||| |||||||||| |||||||| ||| ||||||||||||||||||
Sbjct 55 TTCACGAGGGATTTTTGTTCCGATCTACTTCTCCGGCTTA-TCACCGATTTAGATCTAAG 113
Query 99 CCTGAGGTTTCCTTTGGCCTATTGAG-GATTCCGAGAATGAGACAACGGCAACTATTTTC 157
||||||||||||||| || | || || |||||||||||||||||||||||||||||||||
Sbjct 114 CCTGAGGTTTCCTTTTGCAT-TTTAGAGATTCCGAGAATGAGACAACGGCAACTATTTTC 172
Query 158 CG-GCTTTTTGCTTCTCTTAGCTTTCGTTTCCTTCCAGAAGCTTTGCTACTGTGACGATC 216
|| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 173 CGTG-TTTTTGCTTCTCTTAGCTTTCGTTTCGTTCCAGAAGCTTTGCTACTGTGACGATC 231
Query 217 AAACGGTTCTTTATGAGTCTTTCGATGAGCCTTTTGATGGTCGCTGGATCGTTTCGAAGA 276
|||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 232 AAACGGTTCTGTATGAATCGTTCGATGAGCCTTTTGATGGCCGCTGGATCGTTTCGAAGA 291
Query 277 ATAGTGATTACGAAGGTGTATGGAAGCATGCAAAGAGTGAAGGACATGAAGATTATGGAC 336
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 292 ATAGTGATTACGAAGGTGTATGGAAGCATGCAAAGAGTGAAGGACATGAGGATTATGGAC 351
Query 337 TTCTCGTGAGTGAGAAGGCTAGAAAGTATGGGATTGTGAAAGAGCTTGACGAGCCTCTAA 396
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 352 TTCTCGTGAGTGAGAAGGCTAGGAAGTATGGAATTGTGAAAGAGCTTGACGAGCCTCTAA 411
Query 397 ACCTCAAGGAGGGAACTGTTGTTCTTCAGTACGAGGTTCGTTTCCAGGAAGGACTTGAGT 456
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ACCTCAAGGAAGGAACTGTTGTTCTTCAGTACGAGGTTCGTTTCCAGGAAGGACTTGAGT 471
Query 457 GTGGAGGTGCTTACTTGAAGTACCTCCGTCCTCAAGAAGCTGGATGGACACCTCAGGGAT 516
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 472 GTGGTGGTGCTTACTTGAAGTACCTCCGTCCTCAGGAAGCTGGATGGACACCTCAGGGAT 531
Query 517 TCGATAGTGAATCCCCTTACTCTATCATGTTTGGGCCTGACAAGTGTGGAGCTACAAACA 576
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 532 TCGATAGTGAATCCCCTTACTCTATCATGTTTGGGCCTGACAAGTGTGGAGGTACGAACA 591
Query 577 AAGTGCATTTCATCTTAAAGCACAAGAATCCCAAGAGTGGCGAGTACGTTGAACACCATC 636
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AAGTGCATTTCATCTTGAAGCACAAGAATCCCAAGAGTGGCGAGTACGTTGAACACCATC 651
Query 637 TGAAGTTCCCTCCCTCTGTTCCTTATGACAAGCTTTCCCATGTCTACACCGCCATCTTGA 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TGAAGTTCCCTCCCTCTGTTCCTTATGACAAGCTTTCCCATGTCTACACCGCCATCTTGA 711
Query 697 AACCCGACAACGAGGTTAGGATTTTGGTTGATGGAGAGGAGAAGAAAAAGGCCAATTTAC 756
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AACCCGACAACGAGGTTAGAATTTTGGTTGATGGAGAGGAGAAGAAAAAGGCCAATTTAC 771
Query 757 TCTCTGGTGAAGACTTTGAGCCTGCATTGATCCCTGCCAAGACCATCCCTGACCCTGAAG 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TCTCTGGTGAAGACTTTGAGCCTGCATTGATCCCTGCCAAGACCATCCCTGACCCTGAAG 831
Query 817 ACAAGAAACCAGAAGACTGGGACGAAAGAGCCAAGATTCCCGATCCAAATGCCGTGAAAC 876
||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 832 ACAAGAAACCAGAGGATTGGGACGAAAGAGCCAAGATTCCTGATCCAAATGCCGTGAAGC 891
Query 877 CTGATGACTGGGATGAGGATGCACCCATGGAGATCGAAGATGAGGAAGCTGAGAAACCCG 936
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 892 CTGAGGACTGGGATGAGGATGCACCTATGGAGATTGAAGATGAGGAAGCTGAGAAACCCG 951
Query 937 AAGGATGGTTAGATGATGAGCCTGAGGAGGTCGATGACCCCGAAGCGACCAAGCCTGAAG 996
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 952 AAGGATGGTTAGATGATGAGCCTGAGGAGGTCGACGACCCCGAAGCGACCAAGCCTGAAG 1011
Query 997 ATTGGGATGATGAGGAAGATGGTATGTGGGAGGCTCCTAAGATTGACAACCCCAAATGTG 1056
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1012 ATTGGGATGATGAGGAAGATGGTATGTGGGAGGCTCCTAAAATTGACAACCCCAAGTGTG 1071
Query 1057 AAGCAGCACCAGGTTGTGGTGAATGGAAGAGACCAATGAAGAGGAATCCTGCTTACAAGG 1116
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 AAGCAGCACCTGGTTGTGGTGAATGGAAGAGACCAATGAAGAGGAATCCTGCTTACAAGG 1131
Query 1117 GAAAATGGAGTTCACCTCTTATTGATAACCCGGCTTACAAGGGAATCTGGAAACCCAAAG 1176
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1132 GCAAATGGAGCTCACCTCTTATTGATAACCCGGCTTACAAGGGAATCTGGAAACCCAGAG 1191
Query 1177 ATATTCCTAACCCTGACTACTTTGAGCTAGACAGACCCGATTACGAACCCATTGCAGCCA 1236
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 ATATCCCTAACCCTGACTACTTTGAGCTAGACAGACCCGATTACGAACCCATTGCAGCCA 1251
Query 1237 TCGGTATTGAGATCTGGACAATGCAAGATGGTATCTTGTTTGACAACATCTTGATAGCGA 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 TCGGTATTGAGATCTGGACAATGCAAGATGGTATCTTGTTTGACAACATCTTGATAGCGA 1311
Query 1297 AGGACGAGAAGGTCGCTGAGACTTACAGACAGACCACTTGGAAGCCCAAATTCGATGTTG 1356
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AAGACGAGAAGGTCGCTGAGACTTACAGACAGACCACTTGGAAGCCCAAATTCGATGTTG 1371
Query 1357 AGAAAGAGAAACAAAAGGCAGAAGAGGAAGCTGCTGGCTCTGCAGATGGTCTCAAGAGCT 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 AGAAAGAGAAACAAAAGGCAGAAGAGGAAGCTGCTGGCTCTGCAGATGGTCTCAAGAGCT 1431
Query 1417 ACCAGAAGGTTGTTTTCGACCTCTTGAACAAGGTTGCAGATTTATCTTTCCTAAGTGCCT 1476
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 ACCAGAAGGTTGTATTCGACCTCTTGAACAAGGTTGCAGATTTATCTTTCCTAAGTGCCT 1491
Query 1477 ACAAGTCTAAGATCACGGAACTGATTGAGAAAGCTGAGCAACAACCAAACTTAACCATTG 1536
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1492 ACAAGTCTAAGATCACGGAACTGATTGAGAAAGCCGAGCAACAACCAAACTTAACCATTG 1551
Query 1537 GTGTCCTCGTCTCCATTGTGGTTGTATTCTTCTCGCTCTTCCTCAAGCTTATCTTTGGTG 1596
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 GTGTCCTCGTCGCCATTGTGGTTGTATTCTTCTCGCTCTTCCTCAAGCTTATCTTTGGTG 1611
Query 1597 GCAAAAAGGCGGC---ACCTGTGGAAAAGAAGAAACCAGAAGTAGCAGAGAGTTCAAAGA 1653
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1612 GCAAAAAGGCGGCGGCACCTGTGGAAAAGAAGAAACCAGAAGTAGCGGAGAGTTCAAAGA 1671
Query 1654 GTGGGGATGAGGCGGAGAAGAAGGAAGAAACCGCGGCACCACGCAAAAGGCAACCGAGAC 1713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 GTGGGGATGAGGCGGAGAAGAAGGAAGAAACCGCGGCACCACGCAAAAGGCAACCGAGAC 1731
Query 1714 GTGATAATTAGAACAAG-TTTATAA-GTAGTTTTCGAAGATGTGAAAGGAAAGTTGAG-T 1770
||||||||||||||||| ||| ||| |||||||||||||||||||||| |||||| || |
Sbjct 1732 GTGATAATTAGAACAAGATTT-TAAAGTAGTTTTCGAAGATGTGAAAGAAAAGTTCAGAT 1790
Query 1771 TTCT----CTGTTTTTGGTTTTGGGTTGAATGTTGTTTTCTGCTGTAGCCTATAATGGTG 1826
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 TTATTTTTCTGTTTTTGGTTTTGGGTTGAATGTTGTTTTCTGCTGTAGCCTATAATGGTG 1850
Query 1827 TAACACCAAGTTTGGGAATTTTTTGTCTTTGGGCGAAGAAAAGTA-GGAAGGAATATGTA 1885
|||||||||||||| ||| |||||||||||||||||||||||| | ||| ||||||||||
Sbjct 1851 TAACACCAAGTTTGAGAAATTTTTGTCTTTGGGCGAAGAAAAGAAAGGA-GGAATATGTA 1909
Query 1886 AGTGAA 1891
|||||
Sbjct 1910 TGTGAA 1915
> AT5G07340.2 | Symbols: | Calreticulin family protein | chr5:2317213-2319649
FORWARD LENGTH=1901
Length=1901
Score = 1459 bits (790), Expect = 0.0
Identities = 1222/1428 (86%), Gaps = 39/1428 (3%)
Strand=Plus/Plus
Query 228 TATGAGTC-TTTCGATGAGCCTTTTGATGGTCGCTGGATCGTTTCGA-AGAATAG-TGAT 284
||||| || ||| || ||||||||||||||||||||| ||||||| | |||| || |||
Sbjct 205 TATGAATCGTTT-GACGAGCCTTTTGATGGTCGCTGGGTCGTTTC-AGAGAA-AGCTGAA 261
Query 285 TACGAAGGTGTATGGAAGCATGCA-AAGAGTGAAGGACATGAAGATTATGGACTTCTCGT 343
||| ||||||| |||||||| | | ||||||||||| ||||| |||||||||||||| ||
Sbjct 262 TACCAAGGTGTGTGGAAGCACG-AGAAGAGTGAAGGGCATGATGATTATGGACTTCTAGT 320
Query 344 GAGTGAGAAGGCT-AGAAAGTATGGGATTGTGAAAGAGC------TTGACGAGCCTCTAA 396
||||||||| ||| || ||||| || || || ||||||| |||| ||||||||||
Sbjct 321 GAGTGAGAAAGCTAAG-AAGTACGGAATAGTTAAAGAGCTTGATGTTGATGAGCCTCTAA 379
Query 397 ACCTCAAGGAGGGAACTGTTGTTCTTCAGTACGAGGTTCGTTTCCAGGAAGGACTTGAGT 456
|||| || || ||||||||||||||||| ||||||| ||||||||| ||||| |||||||
Sbjct 380 ACCTTAACGAAGGAACTGTTGTTCTTCAATACGAGGCTCGTTTCCAAGAAGGGCTTGAGT 439
Query 457 GTGGAGGTGCTTACTTGAAGTACCTCCGTCCTCAAGAAGCTGGATGGACACCTC-AGGGA 515
|||| ||||||||||| ||||| || ||||||||||||||||||||| |||| ||||
Sbjct 440 GTGGTGGTGCTTACTTAAAGTATCTTCGTCCTCAAGAAGCTGGATGGGTTCCTCAAGGG- 498
Query 516 TTCGATAGTGAATCCCCTTACTCTATCATGTTTGGGCCTGACAAGTGTGGAGCTACAAAC 575
|| |||| ||| || |||||||||||||||||||| ||||| |||||||| ||||| |||
Sbjct 499 TTTGATAATGATTCTCCTTACTCTATCATGTTTGGACCTGATAAGTGTGGTGCTACCAAC 558
Query 576 AAAGTGCATTTCATCTTAAAGCACAAGAATCCCAAGAGTGGCGAGTACGTTGAACACCAT 635
|| || ||||||||||| ||||| |||||||||||||||||||||| ||||| ||||||
Sbjct 559 AAGGTTCATTTCATCTTGAAGCATAAGAATCCCAAGAGTGGCGAGTTTGTTGAGCACCAT 618
Query 636 CTGAAGTTCCCTCCCTCTGTTCC-TTATGACAAGCTTTCCCATGTCTACACCGCCATCTT 694
|| ||||||||||| |||||||| || ||||| |||||| ||||||||||| || ||||
Sbjct 619 CTCAAGTTCCCTCCTTCTGTTCCGTT-TGACATGCTTTCTCATGTCTACACTGCGGTCTT 677
Query 695 GAAACCCGACAACGAGGTTAGGATTTTGGTTGATGGAGAGGAGAAGAAAAAGGCCAATTT 754
|||| | || || ||||| ||||||||||| ||||| ||||||||||| |||| |||||
Sbjct 678 GAAATCTGATAATGAGGTGAGGATTTTGGTCGATGGTGAGGAGAAGAAGAAGGGTAATTT 737
Query 755 ACTCTCTGGTGAAGACTTTGAGCCTGCATTGATCCCTGCCAAGACCATCCCTGACCCTGA 814
||| |||| |||||||||||||||| | ||||| ||| |||||||||||||||| || ||
Sbjct 738 ACTGTCTGCTGAAGACTTTGAGCCTCCGTTGATTCCTTCCAAGACCATCCCTGATCCAGA 797
Query 815 AGACAAGAAACCAGAAGACTGGGACGAAAGAGCCAAGATTCCCGATCCAAATGCCGTGAA 874
|||||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||||
Sbjct 798 GGACAAGAAGCCAGAAGACTGGGATGAGAGAGCCAAGATTCCTGATCCTAATGCTGTGAA 857
Query 875 ACCTGATGACTGGGATGAGGATGCACCCATGGAGATCGAAGATGAGGAAGCTGAGAAACC 934
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 858 GCCTGATGACTGGGATGAGGATGCACCCATGGAGATTGAAGATGAGGAAGCTGAGAAACC 917
Query 935 CGAAGGATGGTTAGATGATGAGCCTG-AGGAGGTCGATGACCCCGAAGCGACCAAGCCTG 993
|||||||||||| ||||||||||||| || |||| || |||||||| || | |||||| |
Sbjct 918 CGAAGGATGGTTGGATGATGAGCCTGTAG-AGGTTGAAGACCCCGAGGCAAGCAAGCCAG 976
Query 994 AAGATTGGGATGATGAGGAAGATGGT-ATGTGGGAGGCTCCTAAGATTGACAACCCCAAA 1052
||||||||||||| |||||||||||| | |||||||||||||||| || |||| ||||
Sbjct 977 AAGATTGGGATGACGAGGAAGATGGTGA-GTGGGAGGCTCCTAAGGTTTCCAACACCAAG 1035
Query 1053 TGTGAAGCAGCACCAGGTTGTGGTGAATGGAAGAGACCAATGAAGAGGAATCCTGCTTAC 1112
||||| |||||||| || ||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1036 TGTGAGGCAGCACCCGGATGTGGCGAATGGAAGAGACCGATGAAGAGGAACCCTGCTTAC 1095
Query 1113 AAGGGAAAATGGAGTTCACCTCTTATTGATAACCCGGCTTACAAGGGAATCTGGAAACCC 1172
||||| |||||||| |||||||| || |||||||| |||||||||||||||||||||||
Sbjct 1096 AAGGGCAAATGGAGCTCACCTCTCATAGATAACCCAGCTTACAAGGGAATCTGGAAACC- 1154
Query 1173 AA-AGATATTCCTAACCCTGACTACTTTGAGCTAGACAGACCCGA-TTACGAACCCATTG 1230
|| ||| ||||| || ||||| || |||||||| || || || || || || |||||||
Sbjct 1155 AAGAGACATTCCAAATCCTGATTATTTTGAGCTTGAGAGGCC-GAATTTGGAGCCCATTG 1213
Query 1231 CAGCCATCGGTATTGAGATCTGGACAATGCAAGATGGTATCTTGTTTGACAACATCTTGA 1290
| ||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 1214 CTGCCATTGGTATTGAGATATGGACAATGCAAGACGGTATCTTATTTGACAACATCTTGA 1273
Query 1291 TAGCGAAGGACGAGAAGGTCGCTGAGACTTACAGACAGACCACTTGGAAGCCCAAATTCG 1350
|| | || ||||||||||| ||||| ||||||||||| | ||||||||||||||| || |
Sbjct 1274 TATCTAAAGACGAGAAGGTTGCTGAAACTTACAGACAAAGCACTTGGAAGCCCAAGTTTG 1333
Query 1351 ATGTTGAGAAAGAGAAACAAAAGGCAGAAGAGGAAGCTGCTGGCTCTG-CAGATGGTCTC 1409
|||| ||||||||||||||||||||||| || ||||||||||| | | |||||||||||
Sbjct 1334 ATGTGGAGAAAGAGAAACAAAAGGCAGAGGATGAAGCTGCTGG-TGAGGCAGATGGTCTC 1392
Query 1410 AAGAGCTACCAGAAGGTTGTTTTCGACCTCTTGAACAAGGTTGCAGAT-TTATCTTTCCT 1468
||||| ||||||||| || |||||||||||| ||||||||||||| || ||||||||
Sbjct 1393 AAGAGTTACCAGAAGAAGGTGTTCGACCTCTTGTACAAGGTTGCAGACATT-TCTTTCCT 1451
Query 1469 AAGTGCCTACAAGTCTAAGATCACGGAACTGATTGAGAAAGCTGAGCAACA-A-CCAAAC 1526
||||| |||||||| ||||| | |||||| |||||||||||||| |||| | ||||||
Sbjct 1452 TAGTGCGTACAAGTCAAAGATTATGGAACTTATTGAGAAAGCTGA--AACACAGCCAAAC 1509
Query 1527 TTAACCATTGGTGTCCTCGTCTCCATTGTGGTTGTATTCTTCTCGCTCTTCCTCAAGCTT 1586
|||||||| ||||| ||| | ||||| ||| | || ||| |||| |||||| |||||||
Sbjct 1510 TTAACCATCGGTGTGCTCATTTCCATCGTGATCGTCTTCCTCTCTCTCTTCTTCAAGCTC 1569
Query 1587 ATCTTTGGTGGCAAAAAGGCGGCACCTGTGGAAAAGAAGAAACCAGAA 1634
|| |||||||| |||||| | || |||||||||||||| |||
Sbjct 1570 ATATTTGGTGGTGCAAAGGCTA-AG--GTAGAAAAGAAGAAACCGGAA 1614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94728428415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5