BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496352
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61840.1 | Symbols: GUT1 | Exostosin family protein | chr5:2... 2296 0.0
> AT5G61840.1 | Symbols: GUT1 | Exostosin family protein | chr5:24839178-24841940
REVERSE LENGTH=1672
Length=1672
Score = 2296 bits (1243), Expect = 0.0
Identities = 1438/1526 (94%), Gaps = 38/1526 (2%)
Strand=Plus/Plus
Query 1 ACTTCTTCTTCCGACGTTCCAGCTGTTCTAGTTGATCTTTATATAC-TTATATGATCTGG 59
||| ||||||| ||| || ||||||||||||||||||||||||||| ||||||||||| |
Sbjct 130 ACTACTTCTTCTGACATTTCAGCTGTTCTAGTTGATCTTTATATACTTTATATGATCT-G 188
Query 60 GGATTTTGAAGA--TTTTAGGGAGG-------------G-GA-AGAAAAATGAAGTTATC 102
|||||||||||| ||||||||||| | || |||||||||||||||||
Sbjct 189 GGATTTTGAAGAGTTTTTAGGGAGGAACCAAAATTTCTGAGAGAGAAAAATGAAGTTATC 248
Query 103 GAGCTGGGTTTTGATCTTCCTTCTTTGTAACCTCACCTTCCTCTCGACGATTTCTGCTTT 162
|||||| ||||||||||||||||| ||||| ||| || ||| | |||||||||||||
Sbjct 249 GAGCTGCGTTTTGATCTTCCTTCTATGTAA---CACATT-CTC-C-TCGATTTCTGCTTT 302
Query 163 CCGTCTGAGTCGGAGTCAACCAACTGAGCGAATTTCAGGTAGTGCTGGTGATGTGTTGGA 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CCGTCTGAGTCGGAGTCAACCAACTGAGCGAATTTCAGGTAGTGCTGGTGATGTGTTGGA 362
Query 223 GGATAATCCTGTGGGAAGACTGAAAGTCTTTGTTTATGAGCTTCCAAGTAAATACAACAA 282
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AGATGATCCCGTGGGAAGACTGAAAGTCTTTGTTTATGAGCTTCCAAGTAAATACAACAA 422
Query 283 GAAGATACTTCACAAGGACCCGAGGTGTCTAAACCATATGTTTGCTGCTGAGATATATAT 342
|||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 423 GAAGATACTTCAGAAGGATCCGAGATGTCTAAACCACATGTTTGCTGCTGAGATATATAT 482
Query 343 GCAACGGTTTCTTTTATCCAGCCCAGTTCGAACACTTAATCCCGAGGAAGCTGATTGGTT 402
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GCAACGGTTTCTTTTATCTAGCCCAGTTCGAACACTTAATCCCGAGGAAGCTGATTGGTT 542
Query 403 TTACGTCCCTGTGTATACCACTTGTGATCTCACGCCTAATGGGCTTCCTCTTCCTTTTAA 462
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CTACGTACCTGTGTACACCACTTGTGATCTCACGCCTAATGGGCTTCCTCTTCCTTTTAA 602
Query 463 ATCTCCACGGATGATGAGAAGTGCCATTCAGCTTATTGCTTCCAACTGGCCATACTGGAA 522
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 603 ATCTCCACGAATGATGAGAAGTGCCATTCAGCTTATTGCTTCCAATTGGCCATACTGGAA 662
Query 523 TCGCACAGAAGGAGCAGACCACTTCTTTGTCGTGCCTCATGACTTTGGAGCCTGTTTCCA 582
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 663 TCGCACAGAAGGAGCAGACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCA 722
Query 583 TTATCAAGAAGAGAAGGCAATAGGAAGAGGAATACTACCCTTGCTTCAACGGGCTACACT 642
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 723 TTATCAAGAAGAGAAGGCAATAGGAAGAGGAATACTACCCTTGCTTCAACGAGCTACACT 782
Query 643 GGTGCAGACATTTGGACAAAGGAATCATGTTTGCTTGAAGGAGGGTTCAATCACTGTTCC 702
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 783 GGTGCAGACATTTGGACAAAGGAATCATGTTTGCTTGAAAGAAGGTTCAATCACTGTTCC 842
Query 703 TCCATATGCTCCACCACAGAAGATGCAGTCACACTTAATTCCTGAGAAAACTCCTCGATC 762
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 843 TCCATATGCTCCACCACAGAAGATGCAGTCACACTTAATTCCCGAAAAAACTCCTCGATC 902
Query 763 CATCTTCGTTTATTTCAGAGGATTGTTTTATGATGTGGGAAATGACCCTGAGGGTGGCTA 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 903 CATCTTCGTTTATTTCAGAGGATTGTTTTATGATGTGGGAAATGACCCTGAGGGTGGTTA 962
Query 823 TTATGCAAGGGGTGCACGAGCAGCTGTATGGGAAAACTTCAAAGACAATCCGCTGTTCGA 882
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 963 TTATGCGAGGGGTGCAAGAGCAGCTGTATGGGAAAACTTCAAAGACAATCCGCTGTTTGA 1022
Query 883 CATCTCAACAGAGCACCCAACAACATATTATGAGGACATGCAGAGAGCAATCTTCTGCTT 942
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1023 CATCTCAACAGAGCACCCAACAACATATTATGAGGACATGCAGAGAGCAATCTTCTGCCT 1082
Query 943 ATGCCCACTTGGATGGGCACCATGGAGTCCAAGACTGGTGGAAGCTGTGATCTTTGGTTG 1002
|||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||
Sbjct 1083 ATGCCCACTTGGATGGGCCCCATGGAGTCCAAGACTGGTGGAAGCAGTGATATTCGGTTG 1142
Query 1003 CATCCCTGTGATCATAGCAGATGACATCGTGTTACCTTTTGCAGATGCGATCCCTTGGGA 1062
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1143 CATCCCTGTGATCATAGCAGACGACATCGTGTTACCTTTTGCAGATGCAATCCCTTGGGA 1202
Query 1063 AGATATTGGTGTGTTTGTGGATGAGAAAGATGTTCCTTACCTGGACACAATACTCACATC 1122
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1203 AGATATTGGTGTGTTTGTGGATGAGAAAGATGTCCCTTACCTGGACACAATACTCACATC 1262
Query 1123 GATCCCTCCAGAAGTTATACTGAGAAAACAGAGGTTGTTGGCAAATCCGTCGATGAAACA 1182
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1263 GATCCCACCAGAGGTTATACTGAGAAAACAGAGGTTGTTGGCAAACCCGTCGATGAAACA 1322
Query 1183 AGCCATGCTGTTTCCGCAACCGGCTCAACCAGGGGATGCGTTTCATCAAGTGTTGAATGG 1242
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1323 AGCCATGCTGTTCCCGCAACCGGCTCAACCAGGGGATGCGTTTCATCAAGTATTGAATGG 1382
Query 1243 GTTGGCTCGTAAGCTGCCTCATGAGAGGAGTGTGTATCTGAGACCAGGTGAGAAGCTGTT 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 GTTGGCTCGTAAGCTGCCTCATGAGAGGAGTGTGTATCTGAGACCAGGTGAGAAGCTGTT 1442
Query 1303 GAACTGGACGGCAGGACCGGTGGCTGATCTGAAACCTTGGTAAGGACCAGTGTTGGAATT 1362
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1443 GAACTGGACGGCAGGACCGGTCGCTGATCTGAAACCTTGGTAAGGACCAGTGTTGGAATT 1502
Query 1363 TGATTGAAGGATCCTATTG---G-TTGGTT-CTGT-T----GTGTCTGTATTTTGTAGAA 1412
|||||||| || | ||||| | |||||| |||| | |||||||||||||||||||
Sbjct 1503 TGATTGAATGAGC-TATTGTTTGGTTGGTTTCTGTCTTCTCGTGTCTGTATTTTGTAGAA 1561
Query 1413 TCATAACCtttttttGCTATGTAGAAGGGAAAAAGCTT-GATCATTGTAATGAAACTAGA 1471
||||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 1562 TCATAACTTTTTTTTGCTATGTAGAAGGGAAAAAGCTTTG-TCATTGTAATGTAACTAGA 1620
Query 1472 ATCCTTTTGACATCTCACGAGAGAGA 1497
|||||||||||||||||||||| |||
Sbjct 1621 ATCCTTTTGACATCTCACGAGAAAGA 1646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5