BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496355
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61865.1 | Symbols: | unknown protein; Has 30201 Blast hits... 2145 0.0
> AT5G61865.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24847327-24849792
FORWARD LENGTH=1408
Length=1408
Score = 2145 bits (1161), Expect = 0.0
Identities = 1344/1427 (94%), Gaps = 33/1427 (2%)
Strand=Plus/Plus
Query 1 AGAAACGACTGTTTGAAATTCGAATCC-TTTCTCTTCCAACTTGTGTG---A-T-A--TC 52
||||||||||||||||||||||||||| ||||||||| ||||||||| | | | ||
Sbjct 1 AGAAACGACTGTTTGAAATTCGAATCCATTTCTCTTCGGACTTGTGTGATAACTGATTTC 60
Query 53 CTCCTACAATGGAGTTCCCGCCAAGAGCGTTTTATCCACGGAGATTCCAGGCCCCTCCGG 112
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CTCCTACAATGGAGTTCCCGCCAAGAGCGTTTTATCCACGGAGATTCCAGGCCTCTCCGG 120
Query 113 CGCAATACACGGCGGAGGAAAGTGCTGCAGCAGCAACGGCGGCGCCAGATCTCCGAGATA 172
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 121 CGCAATACACGGCGGAGGAAAGTGCTGCAGCAG-TA--TCGGCGCCAGATCTCCGAGATA 177
Query 173 AGCTCGCGACGCTGGTCGATCGCAACAAGAAAGTGAAAATGGCGTACCATCAACTCCAAT 232
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 178 AGCTCGCGACACTGGTCGATCGCACCAAGAAAGTGAAAATGGCGTACCATCAACTCCAAT 237
Query 233 CGCAGATCGCGTTCGGCCTTGTCGAAGCCGGTGAAGTTTTTGATTCTCTGGCGATCCCTT 292
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 238 CGCAGATCGCGTTCGGCCTTGTCGAAGCAGGTGAAGTTTTCGATTCTCTGGCGATCCCTT 297
Query 293 TGATGAAGCTGGTTGGGCTGAAAACGTCGGAGATGGAGAGTGAAGGGAGACACTCCACTT 352
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 298 TGATGAAGTTGGTTGGGCTGAAAACGTCGGAGATGGAGAGTGAAGGGAGACACTCCGCCT 357
Query 353 TTATTTTCAATACTG-AACG-AT-ATCATATGGATACTGCCCAAAATGGAGTACGGACTG 409
||||||||||||||| || | || ||||||||||||||| | |||| |||
Sbjct 358 TTATTTTCAATACTGAAAGGTATCATCATATGGATACTG--C----------ACGGTCTG 405
Query 410 GTGATCTGAACAATCAAATTCGCAGTTCAAAGGTAGAAAATTATGCTGCTAAAGCC-AAA 468
|||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 406 GTGATCTGAACATTCAAATTCGCAGTTCAAAGGAAGAAAACTATGCTGCTAAAGCCGAAA 465
Query 469 TCAGCGGGAAAAGAGATCTTGCACAAGCATAAGGGGCAGCTGAGACAGCTAGTTCATATG 528
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 466 -CAGCGGGGAAAGAGATCTTGCACAAGCATAAGGGGCAGCTGAGACAGTTAGTTCATATG 524
Query 529 CTTAAGCACATTGAAACACAGGTGAATTCACATCGGGAAGACATTCTGCAGATGGTTGAC 588
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 525 CTTAAGCACATTGAAACACAGGTGAATTCACATCGGGAAGATATTCTGCAGATGGTTGAC 584
Query 589 GATCGTAGAACCTTCTTCCAAGAATTCATCCAGAAATCTCTTTACTACCTAAGCTCGGTT 648
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 585 GATCGTAGAACCTTCTTCCAAGAATTCATCCAGAAGTCTCTTTATTACCTAAGCTCGGTT 644
Query 649 CACAGCAAAAACCATGACACTTTCCCTGTCACAGTGAAGCTCCTTCGCGTCCTATTTAAT 708
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 645 CACAGCCAAAACCATGACACTTTCCCTGTCACAGTGAAGCTCCTTCGCGTACTATTTAAT 704
Query 709 AACATCAACGAAATGCTCGGTTCAGTAGATAGTGGTGTTAATGATCTTATGCAGGCTTTA 768
||||||||||| |||| ||||||||||||| ||| || |||||| ||||||||||||||
Sbjct 705 AACATCAACGAGGTGCTTGGTTCAGTAGATACTGGAGTCAATGATTTTATGCAGGCTTTA 764
Query 769 GCAATGAATATGTGTCACCCGATGACCAAGTACGTAGACAACTTGGCAGCTGAAATAAAG 828
|||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 765 GCAAAGAATATGTGTCACCCGATGACCAAGTACGTAGGCAACTTGGCTGCTGAAATAAAG 824
Query 829 CATGGCCCTTGTGTGCAACTGATGAATGTAGTGAATGAGATGGAGAGAGCAAACTCAGAT 888
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 825 CATGGCCCTTGTGTGCAACTGATGAATGTAGTGAATGAGATGGAGAGATCAAACTCAGAT 884
Query 889 ACAAGGAGAGAGCTACAAGATGCTAGAGAAAGGATTAGACTCGCAGAAGAGACAAAGATC 948
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 885 ACAAGGAGAGAGCTACAAGATGCTAGAGAAAGGATTAGACTTGCAGAAGAGACAAAGATC 944
Query 949 AACACTTTATCAAAGCTGAAAAAAGCTGAAGATCAAGTTCAGAGAATGACAACATCTGCC 1008
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 945 AACGCTTTATCAAAGCTGAAAAAAGCTGAAGATCAAGTTCAGAGGATGACAACATCTGCC 1004
Query 1009 AAATTTCTTCTACCCGCGAGTCAGAAGAAGAAACAAGCTGAACATTCTATCACTGGCAAG 1068
|||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||
Sbjct 1005 AAATTTCTTCTACCCGCGAGTC---AGAAGAAACAAGCTGAACATTCTATTACCGGCAAG 1061
Query 1069 CGTATAGGCACAGAGGGCAGCCGAGAACACGAAGAGAAACTACTTTGGGAACTACTGAGC 1128
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 CGTATAGGCACAGAGGGAAGCCGAGAACACGAAGAGAAACTACTTTGGGAACTACTGAGC 1121
Query 1129 AAAAGGAGAAAGCAACTAGAGCCAGAGAGTCCAATGGGACCTAAAGAACTCATCAGACAA 1188
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 AAAAGGAGAAAGCAACAAGAGCCAGAGAGTCCAATGGGACCTAAAGAACTCATCAGACAA 1181
Query 1189 TCAGACACAAAGCAGAAGACATTGGTGTACAATCGCCGAAGGACTAGGAGCCAAGCACTG 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 TCAGACACAAAGCAGAAGACATTGGTGTACAATCGCCGAAGGACTAGGAGCCAAGCACTG 1241
Query 1249 TTAAGTTCTCAAACCGCACGTCCTGATGCTTTGATCCCACTTGGTTTGTCACCTTCTGCT 1308
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1242 TTAAGTTCTCAAACCGCACGCCCTGATGCTTTGATCCCACTTGGTTTGTCACCGTCTGCT 1301
Query 1309 AGAACAGTAACCTGGAGGTAAGTAAAGTAA-GCACAAGTCTCAGTCATTGCATCAGAATC 1367
|||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||
Sbjct 1302 AGAACAGTAACCTGGAGGTAAGTAAACTAAAGCACACGTCTCACTCATTGCATCAGAATC 1361
Query 1368 TATCTTCACTATGCTCTGAAAAAACAATGAGATCCAATAGCTTCTTT 1414
||||||||||| ||| ||||||| |||||||||||| ||||||||||
Sbjct 1362 TATCTTCACTACGCTTTGAAAAA-CAATGAGATCCAGTAGCTTCTTT 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69678356460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5