BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496360
Length=2571
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61910.1 | Symbols: | DCD (Development and Cell Death) doma... 3415 0.0
> AT5G61910.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24860657-24864168 REVERSE LENGTH=2765
Length=2765
Score = 3415 bits (1849), Expect = 0.0
Identities = 2357/2592 (91%), Gaps = 75/2592 (3%)
Strand=Plus/Plus
Query 1 CTAGGGTTTCAAAATCCGGT--AA-CGATGGAGACAGAGATGGAGTTCTCTGATGGTGAA 57
|||||||||||| ||||| | || |||||||||| |||||||| ||||| |||||||||
Sbjct 189 CTAGGGTTTCAATATCCGATAAAAGCGATGGAGACGGAGATGGATTTCTCAGATGGTGAA 248
Query 58 CAAACTAATGCTAATGCACATGTTACCGCCTCCCAATACTTTGCTTCTCCGGTTTATAAT 117
|||||||||| |||| |||||||||| |||||||||||||||||| |||||| |||||||
Sbjct 249 CAAACTAATGGTAATTCACATGTTACTGCCTCCCAATACTTTGCTCCTCCGGGTTATAAT 308
Query 118 AGAAGTCTTGTGGCTGC-T-T----ATGGAAACTCCGCCGTTGGATTAGAAAAAGGGATA 171
||||||||||||||||| | | |||||||| | || |||||||||||||||| |||
Sbjct 309 AGAAGTCTTGTGGCTGCTTATGGGAATGGAAACACAACCATTGGATTAGAAAAAGGAATA 368
Query 172 GAAACGATAC-AGGATCATCAGGAG-AACCTACCTGGTTATATCTTTATGTGTAATGGGA 229
|||| || || | |||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 369 GAAAGGAGACTA-GATCATCATGAGCAA-CTACCTGGTTATATCTTTATGTGTAATGGGA 426
Query 230 GAACCAAAACCGATTGCTACCGCTACCGCGTTTTCGGGATTCCAAGAGGAAGAAAAGACG 289
|||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||
Sbjct 427 GAACGAAAACCGATTGCTACCGTTACCGTGTTTTCGGGATTCCAAGAGGAGGAAAAGACG 486
Query 290 TTGTTGAGAGTATAAAACCAGGCATGAAGCTTTTCCTCTATGACTTTGAGAAGAGACTTC 349
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 TTGTTGAGAGTATAAAGCCAGGCATGAAGCTTTTCCTCTATGACTTTGAGAAGAGACTTC 546
Query 350 TTTATGGTGTCTATGAAGCTACTGTTGGTGGCAGGTTGGATATAGAACCTGAAGCTTTTG 409
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TTTATGGTGTGTATGAAGCTACTGTTGGTGGCAGGTTGGATATAGAACCTGAAGCTTTTG 606
Query 410 ATA-AGAAATATCCAGCTCAGGTTGGATTTAGAATTGTCATGAACTGTCTT-CCCTTGCC 467
| | ||||||||||||||| ||||||||||||||||||||||||||| || |||||| |
Sbjct 607 A-AGGGAAATATCCAGCTCAAGTTGGATTTAGAATTGTCATGAACTGT-TTACCCTTGAC 664
Query 468 AGAAAACACTTTTAAGTCTGCTATCTATGAAAATTACAAAGGTTCCAAATTTAAGCAAGA 527
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 AGAAAACACTTTCAAGTCTGCTATCTATGAAAATTACAAAGGTTCCAAATTTAAGCAAGA 724
Query 528 ACTTTCTCCTCACCAAGTTATGTCTCTGTTATCATTGTTTCGTCCATTTACTTCTCCAGA 587
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 725 ACTTTCTCCTCACCAAGTTATGTCTCTGTTATCATTGTTTCGTTCATTTACGTCTCCAGA 784
Query 588 ACTCGATTTGTTGCCTAATAGGTTGGCTTACAGAGCTTCAGCACCTAGGACTCTATCTTT 647
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 785 ACTCGATTTGTTGCCTCATAGGTTGGCTTCCAGAGCTTCAGCACCTAGGACTCTATCGTT 844
Query 648 TGAGGAAAGGTTCATAGCGGCTACACAAGTTAGAAATGCTTCATCGGTTTTAGATCCTCT 707
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 845 TGAGGAAAGGTTCATAGCGGCTACACATCTTAGAAATGCTTCATCGGTTTTAGATCCTCT 904
Query 708 GTCTGCTCGTCATGCAGAACCACGACTTGGCTCTCTTATGGCCCATCAGTCTGTTCCCCG 767
|||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 905 GTCTGCTCGTCATGTAGAACCACGACTTGGCTCTGTTATGGCCCATCAGCCTGTTCCCCG 964
Query 768 CACATCTCTACTCCAACATAGTTACTCTAGACAAGACGACTACACAACCCCACCTAGAGA 827
||||||||| || ||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 965 CACATCTCTGCTTCAACATAGTTACTTTAGACAAGACGACTACACGACCCCACCTAGAGA 1024
Query 828 AAGTCTGTCAAATTTGAATCAGCCTTATTATCCTACAGAAGCTCGGCAGCAACGGTTGCT 887
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1025 AAGTCTGTCAAATTTGAATCAGCCTTATTATCCTACAGAAGCTCGGCAACTACGGTTGCT 1084
Query 888 CGGAGACCCGTCTCGGTCAGATCCTCCTCGGTCAGAACCTCTGCGGTCATCTATACAGGA 947
||||||||| ||||| |||||| |||||||||| ||||||| |||||||||||| |||||
Sbjct 1085 CGGAGACCCTTCTCGCTCAGATTCTCCTCGGTCCGAACCTCCGCGGTCATCTATTCAGGA 1144
Query 948 CCCTCAACTCAAATACCTAACCATTTTATCTAATATTCGGAGATATGGATCTGCCTCAGA 1007
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1145 TCCTCAACTCAAATACCTCACCATTTTATCTAATATTCGGAGATATGGATCTGCATCAGA 1204
Query 1008 TCGCTTGGCCTCAGAAAATGAATATTATCCGACAACACCATCAGAGAAGGACCAGTTTGC 1067
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1205 TCGCTTGGCCTCAGAAAATGAATATCATCCGGCAACACCATCAGAGAAGGACCAGTTTGC 1264
Query 1068 T-TCACCTTATTCCGATAATAAATATTACCCCTCGACATTATCTGCGAATGAGCATCCTT 1126
| | ||||||||| ||||||||| ||||||| ||||| ||||||| || |||||||||||
Sbjct 1265 TGT-ACCTTATTCTGATAATAAAAATTACCCTTCGACTTTATCTGGGAGTGAGCATCCTT 1323
Query 1127 CTGCTTCTGCAGCTAATGGGAGTGTGTATAGAAGTGAGTTCTATACTTCAGCATCACAAA 1186
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1324 CTGCTTCTGCAGCTAATGGGAGTGTGTATAGAAGTGAGTTCTATAATTCAGCATCACAAA 1383
Query 1187 AAGAAGGGGAAGCTAGTCAGCAGCATGAGATCCCTTCTGGGACTTACAATCATCCAGAAG 1246
| ||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct 1384 AGGAAGGGGAAGCTAGTCAGCAGCATGAGATCCCTGCTGGGACTTACCATCACCCAGAAG 1443
Query 1247 CATCTACAGTTTCAAATACTACAGTGTCCATCCAACCAGATATACAGGCAGTTAGTGTTG 1306
|||| |||||||| ||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 1444 CATCAACAGTTTCCAATACTACAAAGTCCATGCAACCAGATATGCAGGCAGTTAGTGTTG 1503
Query 1307 CTCAATCTCATACCGAGACAGCTGGCTATCCTACACCGGTACATGGTGAAGCTTCACAAC 1366
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1504 CTCAATCTCATACCGAGACAGCTGGCTATCCTACACCGGCACATGGTGAAGCTTCACAAC 1563
Query 1367 CACCTGCTGTAGCAATTGGTTACACACACCAACCTCAAACTGTAGCGGGTAATTATAGCA 1426
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1564 CACCTGCTGGAGCAATTGGTTACACACACCAACCTCAAAGTGTAGCGGGTAATTATAGCA 1623
Query 1427 CGAATTCACAGCCTGGGAATGTGGAAGAAAGTACACTATCATATGCTGGAACAGATAGTT 1486
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1624 CGCATTCACAGCCTGGGAATGTGGAAGAAAGTACACAATCATATGCTGGAACAGATAGTT 1683
Query 1487 ACTCACAACAGCAATATTATGCAGCTATGGGGCATACTACTCAACTCTATGCTGGTGGAA 1546
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1684 ACTCACAACAGCAATATTATGCAGCTATGGGGCCTACTACTCAACTCCATGCTGGT---- 1739
Query 1547 CCGGATATATTCAAAAACCCCATGAAATTGGGTACGCTCAGCAACCCCATGCTGCAGCAA 1606
||||||||||||||||| ||||||||||||||| |||||||||| |||| ||| ||||
Sbjct 1740 --GGATATATTCAAAAACCTCATGAAATTGGGTACTCTCAGCAACCTCATGATGCGGCAA 1797
Query 1607 CCGGGTACTCTCAGCAACCTCATGCTGCAGCAACCGGGTACTCCCAGGTACCCT-ATGCT 1665
|||||||||||||||||||||||| |||||||||||||||||| || | | ||| ||| |
Sbjct 1798 CCGGGTACTCTCAGCAACCTCATGATGCAGCAACCGGGTACTCTCA-GCAACCTCATGAT 1856
Query 1666 GCAGCAACCGGGTACTCCCAGGTACCCT-ATGATGCAGCAACCGGGTACTCCCAGCAACC 1724
||||||||||||||||| || | | ||| ||| ||| ||||||||||||| |||||| |
Sbjct 1857 GCAGCAACCGGGTACTCTCA-GCAACCTCATGCCGCATCAACCGGGTACTCTCAGCAAAC 1915
Query 1725 CTATGCTGCAGCAACCGGGTACTCTCAGCAACCCTATGCTGCAGCAACCGGGTACTCTCA 1784
|||||||||||||||||||||| ||||||||||| |||| || ||| |||||||| ||||
Sbjct 1916 CTATGCTGCAGCAACCGGGTACACTCAGCAACCCCATGCGGCGGCAGCCGGGTACACTCA 1975
Query 1785 GCAACCCCATGCTGCCACAGCCGGGTATTCTCAGCAACCCCATTCTGCAGCGACTGCGCA 1844
|||||||||||| || || ||||||||||||||||||||||| ||||||| || |||||
Sbjct 1976 GCAACCCCATGCGGCGGCAACCGGGTATTCTCAGCAACCCCATGCTGCAGCTACCGCGCA 2035
Query 1845 CGCTCAGCAACCCCATGCTGCAGCGACTGCGCACGCTCAGCAACCCCATGCTGCAGCGAC 1904
||||||||||||| ||||||||||||| |||||||||||||||| |||||||| ||| ||
Sbjct 2036 CGCTCAGCAACCCTATGCTGCAGCGACCGCGCACGCTCAGCAACTCCATGCTGTAGCTAC 2095
Query 1905 CGCGCACGCTCAGCAACCT-CATTCTGCAGCGACCGCGCACGCT---C-A----A---T- 1951
| | | |||| |||| || ||| ||||||| |||| | ||||| | | | |
Sbjct 2096 TGGGTATGCTCTGCAA-CTCCATGCTGCAGCTACCGGGTACGCTCAGCAACCCCATGCTG 2154
Query 1952 ACACAAC-----A-------CAACCACATGCTCAAGCTGTTGAATACACAATGCAACCAC 1999
| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 2155 CCGCAACTGGGTATGCTTTGCAACCACATGCTCAAGCTGTTGAATACACAATGCAACCAC 2214
Query 2000 ATGCTCAAGCTGTTGGTTACATGCCGCAATACCATGCTCAAACTGGCGTATACAGTCAAC 2059
|||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||
Sbjct 2215 ATGCTCAAGCTGTTGGCTACATGCCGCAATACCATGCTCACGCTGTTGTATACAGTCAAC 2274
Query 2060 AAGGTGTAACGCAAGGTTCTGTACCAGGGGCTCCTGGGACAGCTGATTGGAATGCTGCAA 2119
||||||| |||||||||||||||||| |||||||||||||| ||||||| ||||||||||
Sbjct 2275 AAGGTGTGACGCAAGGTTCTGTACCAAGGGCTCCTGGGACAACTGATTGTAATGCTGCAA 2334
Query 2120 ACCAGGCATATTCTGCAACAGGAGATTGGAATGCGGTGAATCAGTCTTATTACCCTCACA 2179
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
Sbjct 2335 ACCAGGCATATTCTGCAACAGGAGATTGGAATGCAGTGCATCAGTCTTATTACCCTCAGA 2394
Query 2180 CAGCAGATGCAACCACAACCTATTATCAAACATCTTAAAACGTGAAAGCAAAGTGTTACT 2239
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||
Sbjct 2395 CAGCAGATGCAACCACAACGTATTATCAAACATCTTAAAACGTTAAAGCAAAGTGTTGCT 2454
Query 2240 AATCTGGTGATCTGAGCAACTTGTGTGTGGTGGG-GAA-AAGCATGGACTCAAACTGATG 2297
| ||||| ||||||| |||||||| ||| |||| | |||||||||||| ||||| ||
Sbjct 2455 ACTCTGG--ATCTGAGAAACTTGTGCGTGATGGGTGCGGAAGCATGGACTCGAACTGGTG 2512
Query 2298 CGCTCACTGGACAATAAGGTCAAGGACATAAAAGCTAGAGTCTCCAGCTCCGTTTACTGT 2357
| |||| |||| || |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2513 CACTCAGTGGAAAAGAAGGTCAAGGACATAAAA-CTAGAGTCTCCAGCTCCGTTTACTGT 2571
Query 2358 AAGTTTAAAAGTTCTACGTTATGGTTTGATCATATTCAT----GAG--G---A--A--A- 2403
|||||||||||||||| |||| ||||||||||||||||| ||| | | | |
Sbjct 2572 AAGTTTAAAAGTTCTATGTTACGGTTTGATCATATTCATTTCTGAGCTGCGCATGAGGAA 2631
Query 2404 -TTCCTCAAAACATCAAAATTTCTCTAAGTCCCGCTTCAGGAGTGCAATCTGAAATGCAA 2462
||||||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||
Sbjct 2632 ATTCCTCAAACCATCAAAACTTCTTTAAGTCCCGTTTCAGGAGTGCAATCTGAAATGCAA 2691
Query 2463 TTCTGATTGGGATTTAAAGTTAATAAAACATATTATAACTCTGTTATCATTACTTATCCT 2522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2692 TTCTGATTGGGATTTAAAGTTAATAAAACATATTATAACTCTGTTATCATTACTTATGCT 2751
Query 2523 AAAACATTTCTT 2534
||||||||||||
Sbjct 2752 AAAACATTTCTT 2763
Score = 375 bits (203), Expect = 8e-103
Identities = 289/330 (88%), Gaps = 8/330 (2%)
Strand=Plus/Plus
Query 1609 GGGTACTCTCAGCAACCTCATGCTGCAGCAACCGGGTACTCCCAGGTACCCT-ATGCTGC 1667
|||||||||||||||||||||| ||| |||||||||||||| || | | ||| ||| |||
Sbjct 1767 GGGTACTCTCAGCAACCTCATGATGCGGCAACCGGGTACTCTCA-GCAACCTCATGATGC 1825
Query 1668 AGCAACCGGGTACTCCCAGGTACCCT-ATGATGCAGCAACCGGGTACTCCCAGCAACCCT 1726
||||||||||||||| || | | ||| |||||||||||||||||||||| |||||| |||
Sbjct 1826 AGCAACCGGGTACTCTCA-GCAACCTCATGATGCAGCAACCGGGTACTCTCAGCAA-CCT 1883
Query 1727 -ATGCTGCAGCAACCGGGTACTCTCAGCAACCCTATGCTGCAGCAACCGGGTACTCTCAG 1785
|||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1884 CATGCCGCATCAACCGGGTACTCTCAGCAAACCTATGCTGCAGCAACCGGGTACACTCAG 1943
Query 1786 CAACCCCATGCTGCCACAGCCGGGTATTCTCAGCAACCCCATTCTGCAGCGACTGCGCAC 1845
||||||||||| || |||||||||| |||||||||||||| | || || || | | |
Sbjct 1944 CAACCCCATGCGGCGGCAGCCGGGTACACTCAGCAACCCCATGCGGCGGCAACCGGGTAT 2003
Query 1846 GCTCAGCAACCCCATGCTGCAGCGACTGCGCACGCTCAGCAACCCCATGCTGCAGCGACC 1905
|||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||
Sbjct 2004 TCTCAGCAACCCCATGCTGCAGCTACCGCGCACGCTCAGCAACCCTATGCTGCAGCGACC 2063
Query 1906 GCGCACGCTCAGCAACCTC-ATTCTGCAGC 1934
|||||||||||||||| || || ||| |||
Sbjct 2064 GCGCACGCTCAGCAAC-TCCATGCTGTAGC 2092
Score = 331 bits (179), Expect = 2e-89
Identities = 357/442 (81%), Gaps = 15/442 (3%)
Strand=Plus/Plus
Query 1576 GGGTACGCTCAGCAACCCCATGCTGCAGCAACCGGGTACTCTCAGCAACCTCATGCTGCA 1635
|||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1833 GGGTACTCTCAGCAACCTCATGATGCAGCAACCGGGTACTCTCAGCAACCTCATGCCGCA 1892
Query 1636 GCAACCGGGTACTCCCAGGTACCCTATGCTGCAGCAACCGGGTACTCCCAGGTACCCTAT 1695
||||||||||||| ||| | ||||||||||||||||||||||| | ||| |||| ||
Sbjct 1893 TCAACCGGGTACTCTCAGCAAACCTATGCTGCAGCAACCGGGTACACTCAGCAACCCCAT 1952
Query 1696 GATGCAGCAACCGGGTACTCCCAGCAACCCTATGCTGCAGCAACCGGGTACTCTCAGCAA 1755
| || ||| |||||||| | ||||||||| |||| || ||||||||||| |||||||||
Sbjct 1953 GCGGCGGCAGCCGGGTACACTCAGCAACCCCATGCGGCGGCAACCGGGTATTCTCAGCAA 2012
Query 1756 CCCTATGCTGCAGCAACCGGGTACTCTCAGCAACCCCATGCTGCCA-C-AGCCGGGTATT 1813
||| |||||||||| |||| | || ||||||||||| ||||||| | | | ||| | |
Sbjct 2013 CCCCATGCTGCAGCTACCGCGCACGCTCAGCAACCCTATGCTGC-AGCGA-CCGCGCACG 2070
Query 1814 CTCAGCAACCCCATTCTGCAGCGACTGCGCACGCTCAGCAACCCCATGCTGCAGCGACTG 1873
||||||||| |||| ||| ||| |||| | | |||| ||||| |||||||||||| || |
Sbjct 2071 CTCAGCAACTCCATGCTGTAGCTACTGGGTATGCTCTGCAACTCCATGCTGCAGCTACCG 2130
Query 1874 CGCACGCTCAGCAACCCCATGCTGCAGCGACCGCGCACGCTCAGCAACCTCATTCTGCAG 1933
| |||||||||||||||||||||| || || | | | ||| |||||| ||| || ||
Sbjct 2131 GGTACGCTCAGCAACCCCATGCTGCCGCAACTGGGTATGCTTTGCAACCACATGCT-CA- 2188
Query 1934 CGACCGCGCACGCTCAATACACAACACAACCACATGCTCAAGCTGTTGAATACACAATGC 1993
| || | | ||||||||| |||||||||||||||||||||| |||| ||
Sbjct 2189 --A--GCT---GTTGAATACACAATGCAACCACATGCTCAAGCTGTTGGCTACATGCCGC 2241
Query 1994 AACCAC-ATGCTCAAGCTGTTG 2014
|| || ||||||| |||||||
Sbjct 2242 AAT-ACCATGCTCACGCTGTTG 2262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127624702992
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5