BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496364
Length=1880
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61930.1 | Symbols: APO3 | Arabidopsis thaliana protein of u... 1906 0.0
AT5G61920.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 459 6e-128
> AT5G61930.1 | Symbols: APO3 | Arabidopsis thaliana protein of
unknown function (DUF794) | chr5:24866075-24867821 REVERSE
LENGTH=1520
Length=1520
Score = 1906 bits (1032), Expect = 0.0
Identities = 1193/1269 (94%), Gaps = 18/1269 (1%)
Strand=Plus/Plus
Query 1 AAGAAAGCTAGT-GCAAATCTCCGTCTTCGTAATCAGAAAATCTCA-TTTTCATCTTCCA 58
|||||||||||| | |||||||| |||||||||||||||||||| | |||||||||||||
Sbjct 165 AAGAAAGCTAGTAG-AAATCTCCATCTTCGTAATCAGAAAATCTAATTTTTCATCTTCCA 223
Query 59 TTAAACCTCTAACCAATCTCGACGTCGACGTTTCAGTTGTTGATGATGACGATCCTCTTT 118
||||| ||||||||||||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 224 TTAAATCTCTAACCAATCTCGACGTCGACGTTTCAGTTGATAATGATGAAGATCCTCTTT 283
Query 119 ACGCCGACGTACCCAAGCCTCGGAAGGATAAATCGGAGAGGAAACCGTATCCGACTCCGA 178
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 284 ACGCCGACGTACCTAAACCTCCGAAGGATAAATCGGAGAGGAAACCGTATCCGACTCCGA 343
Query 179 TGAAGGAGTTGATTCGTCGTGCGAAAGAGGAGAAACAGCTGAGAAAACTACAACCATGTC 238
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 344 TGAAGGAGTTGATTCGTCGTGCGAAAGAGGAGAAACAACTGAGAAAATTACAACCATGTC 403
Query 239 GGGTTCTAGAAGATCCGCCGGATAATGGTATACTTGTGCCGGAACTTGTCGACGTGGCTC 298
| ||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 404 GAGTTCTCGAAGATCCACCGGATAATGGTTTACTTGTGCCGGAACTTGTCGACGTGGCTC 463
Query 299 ACTGTGTTCACCGATGCCGCAAC-TCGTTACTCTCTGGCCTCTCTAAAATCATTCATCAT 357
||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||
Sbjct 464 ACTGTGTTCACCGATGCCGTAACAT-GTTGCTCTCTGGCCTCTCTAAAATCATTCATCAT 522
Query 358 GTTCCTGTTCATCGCTGCAGATTGTGCTCTGAGGTTCACATTGGCAAGGAAGGTCATGAA 417
|||||||||||||| |||||||||||| |||||||||| ||||||||| |||||||||||
Sbjct 523 GTTCCTGTTCATCGTTGCAGATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAA 582
Query 418 ATCAGGACTTGCACAGGGCCGGGGAGCGGTTCAAGAAGTGCGACTCATGTTTGGAAAAGA 477
|||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||
Sbjct 583 ATCAGGACTTGCACTGGTCCCGGGAGTGGTTCAAGAAGTGCGACTCATGTTTGGAAAAGA 642
Query 478 GGAAGAGCGAGTGATGTTGTGTTGTTCCCAAAATGTTTTCACCTCTATGACCGTGCTGTT 537
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GGAAGAGTGAGTGATGTTGTGTTGTTCCCAAAATGTTTTCACCTCTATGACCGTGCTGTG 702
Query 538 AAACCGAGAGTTATACATGACGAGAGATTTACCGTCCCTAAAATCTCTGCGGTTCTTGAG 597
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 703 AAACCGAGAGTTATACATGATGAGAGATTTACTGTCCCTAAAATCTCTGCGGTTCTTGAG 762
Query 598 CTATGCATACAGGCTGGCGTAGACCTTGAGAAGTTCCCATCAAAGCGAAGATCGAAACCT 657
||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 763 CTATGCATACAGGCTGGTGTAGACCTCGAGAAATTCCCATCCAAGCGAAGATCGAAACCT 822
Query 658 GTGTACAGCATCGAAGGACGGATTGTAGATTTTGAGGAAGTCAACTG-TGAAAATTCAGA 716
|||||||||||||||||||||||||| ||||||||||| |||||| | || ||||||||
Sbjct 823 GTGTACAGCATCGAAGGACGGATTGTGGATTTTGAGGACGTCAAC-GATGGAAATTCAG- 880
Query 717 AATT-GCAGTTACTTCTACTACTACACTTTTACAAGAAGACGATTGTTGCAAGGAAGAGA 775
|||| |||||||||||||||||||||||| |||||||||| ||| ||||||||| | ||
Sbjct 881 AATTGGCAGTTACTTCTACTACTACACTTATACAAGAAGATGATCGTTGCAAGG-A-AG- 937
Query 776 AGAAGAAGAGCTTGAAGGAATTAAGCATCGAGACGATGGAGTCATGGTTTGAAATGGTTT 835
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 938 AGAAGAAGAGCTTGAAGGAATTAAGCTTCGAGACGATGGAGTCATGGTTTGAAATGGTTT 997
Query 836 CAGGGGTCAGGAAACTGATGGAGAGATACAAAGTGTGGACTTGTGGGTATTGTCCTGAGA 895
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 998 TAGGGGTCAGGAAACTGATGGAGAGATACAGAGTGTGGACTTGTGGGTATTGTCCAGAGA 1057
Query 896 TTCAGGTGGGTCCAAAGGGACACAAAGTAAGGATGTGTAAAGCCACAAAGCATCAGATGC 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TTCAGGTGGGTCCAAAGGGACACAAAGTAAGGATGTGTAAAGCCACAAAGCATCAGATGC 1117
Query 956 GAGACGGAATGCACGCGTGGCAAGAGGCGACTATTGATGATGTGGTCGGTCCAAACTATG 1015
||||||||||||| || |||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1118 GAGACGGAATGCATGCCTGGCAAGAAGCGACTATTGATGATGTGGTCGGTCCAACCTATG 1177
Query 1016 TATGGCATGTTCGGGATCCTACTGATGGTTCTGTTCTTGATAATAGCTTGAAGAGATTTT 1075
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1178 TGTGGCATGTTCGGGATCCTACTGATGGTTCTGTTCTTGATAATAGCTTGAAGAGGTTTT 1237
Query 1076 ACGGGAAGGCTCCTGCGGTTGTAGAGATGTGTGTGCAAGGTGGTGCACCGATACCTGATC 1135
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1238 ACGGGAAGGCTCCTGCGGTTATAGAGATGTGTGTGCAAGGTGGTGCACCGGTACCTGATC 1297
Query 1136 AGTACAAGAGTATGATGAGGCTCGATGTGGTTTACCCTCAACGCGATGAGGTTGATCTAG 1195
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1298 AGTACAACAGTATGATGAGGCTCGATGTAGTTTACCCTCAACGCGATGAGGTCGATCTAG 1357
Query 1196 TCGCTTGACCTCTTTAAGTAGTCAGCATTG-TT--T--TC-AGTATGGTCACATTGAAAT 1249
|||||||||||||||||||| ||||||||| || | | ||||||| |||| ||||||
Sbjct 1358 TCGCTTGACCTCTTTAAGTATTCAGCATTGCTTAATGATTTAGTATGGACACAGTGAAAT 1417
Query 1250 ACTCCCCTG 1258
|||||||||
Sbjct 1418 ACTCCCCTG 1426
> AT5G61920.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
6 plant structures; EXPRESSED DURING: 4 anthesis, F mature
embryo stage, petal differentiation and expansion stage, E
expanded cotyledon stage, D bilateral stage; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G67170.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:24864302-24866019 FORWARD LENGTH=1348
Length=1348
Score = 459 bits (248), Expect = 6e-128
Identities = 296/319 (93%), Gaps = 3/319 (1%)
Strand=Plus/Minus
Query 1563 TTTACCGTAATCTCTGGTGCTCCTCTTTCAACCGCTCAAGCTCTTGGCTCGATGCTTCTA 1622
||| |||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 813 TTT-CCGTAATCTCTGATGCTCCTCTTTCAACCGCTCAAGCTCTTGACTCGACGCCTCTA 755
Query 1623 AACTCTCTGCCTCGAGACAAACCTTCTTCAAATCTTTTATTACCAACTTCACCTGTGAAG 1682
||||||||||||| ||||||||||||||||||||||| ||| |||||||||||| |||||
Sbjct 754 AACTCTCTGCCTCAAGACAAACCTTCTTCAAATCTTTCATTCCCAACTTCACCTTTGAAG 695
Query 1683 CAAGCTCCTCACGTTCTCTGGCCAATCTATGAGCCTCAATGTGAGCTAATTGTACCTCCC 1742
||||||||||||||||||| ||||||||||||||||||||||||||| |||| || ||||
Sbjct 694 CAAGCTCCTCACGTTCTCTCGCCAATCTATGAGCCTCAATGTGAGCTGATTGCACTTCCC 635
Query 1743 TCCTTATATTCTCTCTG-TTCTTGACCATACCCTCCATTTTCGCTATTTTCTCAAGAGTG 1801
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TCCTTATATTCTCTC-GATTCTTGACCATACCCTCCATTTTCGCTATTTTCTCAAGAGTC 576
Query 1802 GCTCGGATCTGAATCTCGCAGTCTGTTTCGGTCTTTCTGATGTGAGCTCTTAGCCCCTGG 1861
| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 575 GATCGGATCTGAATCTCGTGGTCTGTTTCCGTCTTTCTGATGTGAGCTCTTAGCCCCTGG 516
Query 1862 GCTTCACGGTCAGCGACGG 1880
|||| |||||||| ||||
Sbjct 515 ACTTCGCGGTCAGCCACGG 497
Score = 261 bits (141), Expect = 2e-68
Identities = 159/168 (95%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 1319 CCTAAAAAGTAAAAACCATTCAATTCTCGACAGCTTTGTTCCTTGCGGTCGCGATCTCAC 1378
|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 976 CCTACAAAGTAAAAACCATTCAATTCTCGACAGCTTTGTTCCTTGCGGTTGAGATCTCAC 917
Query 1379 TTCGTAGCTTCTCAATCGCTTTAACCGCTCCAATTATTTTCCTCTCCATTTCTTTCAATT 1438
|||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 916 TTCGCAGCTTCTCAATCGCTTTAACCGCTCCAATTATCTTCCTCTCCATCCCTTTCAATT 857
Query 1439 GCCCAAGTTTCTCTACGTTCCCACTCTTCTCTTCCTCAAACTCTTTCC 1486
|| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 856 GCGCAAGTTTCTCTACGTTCCCACTCTTCTCTTCCTCGAACTCTTTCC 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93071810430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5