BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496370
Length=2216
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61970.1 | Symbols: | signal recognition particle-related /... 3446 0.0
> AT5G61970.1 | Symbols: | signal recognition particle-related
/ SRP-related | chr5:24888617-24893328 FORWARD LENGTH=2265
Length=2265
Score = 3446 bits (1866), Expect = 0.0
Identities = 2104/2214 (95%), Gaps = 36/2214 (2%)
Strand=Plus/Plus
Query 18 ACTACTTGCTTGAGATTCAATCGAAAACTGAAATTCGCACGCCTCCGCTGCTCGCCGTCG 77
||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 50 ACTCCTTGCTTGAGATTCAATCGAAAACTGAAATTCGCAAGCCTCCACTGCTCGCCGTCG 109
Query 78 CCCACATCGGAATATTCCATTGGCA-C--A--ACCGTGAAATCATCTCATCAGATCAAAA 132
| | ||||||||||||||||||||| | | ||| ||||||||||||||||||||||||
Sbjct 110 CACTCATCGGAATATTCCATTGGCACCGTACTACCCTGAAATCATCTCATCAGATCAAAA 169
Query 133 CGGG-GTTTTAACTAGAATTGTGTGGATTAATGGGGAAGAAGGAGAGCGAGTTGTCTGCA 191
|||| | |||||||||||||| |||||||||||||||||||| |||||||| | ||||||
Sbjct 170 CGGGAG-TTTAACTAGAATTGCGTGGATTAATGGGGAAGAAGCAGAGCGAGATATCTGCA 228
Query 192 ATGGAGATCGACGATCCGAAATCTGAAAGCTCTGATCAGATCCTTCCGAGGTTCTCGATC 251
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 229 ATGGAGATCGACGATCCGAAATCTGAAAGCTCGGATCAGATCCTTCCAAGGTTCTCGATC 288
Query 252 AATGTTCTGCAGCTGATGAAATCTTCTCAGGCGCAACATGGTCTGCGTCATGGTGACTAT 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 AATGTTCTGCAGCTGATGAAATCTTCTCAGGCGCAACATGGTCTGCGTCATGGTGACTAT 348
Query 312 GCTCGCTATCGGAGGTATTGCTCAGCACGTTTGAGGAGGTTATACAAGTCCTTGAAATTC 371
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 349 GCTCGCTATCGGAGGTATTGCTCCGCACGTTTGAGGAGGTTATACAAGTCCTTGAAATTC 408
Query 372 ACTCATGGCCGTGGTAAATACACTCGACGAGCCATTCTTGAATCAACTGTCACTGATGTT 431
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 ACTCATGGCCGTGGAAAATACACTCGACGAGCCATTCTTGAATCAACTGTCACTGATGTT 468
Query 432 AGGTTCCTTCATGTGGTTTTCTATATGGCGGAAAGAGCATGGAGCCATGCAATGGAAAAA 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AGGTTCCTTCATGTGGTTTTCTATATGGCGGAAAGAGCATGGAGCCATGCAATGGAAAAA 528
Query 492 AGACAGTTACCAGATGGGCCTAATGCACGGCAGCGGATATATTTGGTTGGTAGGCTAAGG 551
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 529 AGACAGCTACCAGATGGGCCTAATGCACGGCAGCGGATATATTTGGTTGGTAGGCTGAGG 588
Query 552 AAGGCAGTTAAATGGGCTTCCCTTTTCTCAAGTTTGTGCTCTATTAAGACAGATTCCAGG 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 AAGGCAGTTAAATGGGCTTCCCTTTTCTCAAGTTTGTGCTCTATTAAGACAGATTCCAGG 648
Query 612 ACATCACTGGAAGCTGAGGCATATGCATCCTATATGAAAGGTACTCTGTTGTTTGAGCAA 671
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 ACATCTCTGGAAGCTGAGGCATATGCATCCTATATGAAAGGTACTCTGTTGTTTGAGCAA 708
Query 672 GATCAAAATTGGGAAACTGGGTTGGCATGTTTCAAAAACGCCAGAGCTGTTTATGAGGAA 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GATCAAAATTGGGAAACTGGGTTGGCATGTTTCAAAAACGCCAGAGCTGTTTATGAGGAA 768
Query 732 CTTGGGAAATATGGAGATCTAGAAAACCAAGTTCTTTGCCGGGAACGGGTTGAGGAGCTT 791
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 769 CTTGGGAAATATGGAGATCTAGAGAACCAAGTTCTTTGCCGAGAACGGGTTGAGGAGCTT 828
Query 792 GAGCCTAGTATTCGATACTGCCTACACAAAATTGGCAAGTCAAACTTGCAGACATCTGAA 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GAGCCTAGTATTCGATACTGCCTACACAAAATTGGCAAGTCAAACTTGCAGACATCTGAA 888
Query 852 CTTCTTCAGATTGGTGAGATGGAAGGCCCTGCATTGGATCTTTTCAAAGCAAAAATAGAG 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTTCTTCAGATTGGTGAGATGGAAGGCCCTGCATTGGATCTTTTCAAAGCAAAAATAGAG 948
Query 912 GCTGCTATGGAAGAGGCTAGATCTCAACAAGCTGCATCTCTTACAGAGTTTAATTGGCTT 971
||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||
Sbjct 949 GCTGCTATGGAAGAGGCCAGGTCTCAACAAGCTGCATCTCTTACAGAGTTTAGTTGGCTT 1008
Query 972 GGCTACAGATTTCCGGTTTCGAACCCAAAATCTCGGGTTTCTATTTTAAAAGCCCAGGAA 1031
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1009 GGCTACAGATTTCCAGTTTCGAATCCAAAATCTCGGGTTTCTATTTTAAAAGCTCAGGAA 1068
Query 1032 CTTGAGAAGGAGCTACAGGGTCCGACAGCAGAATCTCTCCCTGCAGAGAAAAAGCTAACC 1091
||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1069 CTTGAGAAGGAACTACAGAGTCCAACAGCAGAATCTCTCCCTGCAGAGAAAAAGCTAACC 1128
Query 1092 ATCTTTGATAAATTATTCACTGCATATCATGATGCCAGGAACACCATACGCAGTGACTTG 1151
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1129 ATTTTTGATAAATTATTCACTGCATATCATGATGCCAGGAACACGATACGCAGTGACTTG 1188
Query 1152 GTAAGTGCAGGAAATGCTGAATCTGTTAAAGATGACCTAAATGGTTTGGACAAAGCTGTT 1211
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 GTAAGTGCAGGTAATGCTGAATCTGTTAAAGATGACCTAAATGGTTTGGACAAAGCTGTT 1248
Query 1212 GGAGCTGTGCTAGGACAAAGAACCATTGAACGGAACCAGTTGTTGGTTAAAATAGCAAAG 1271
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 1249 GGAGCTGTGCTAGGACAAAGAACCATTGAAAGGAACCAGTTGCTGGTTAAAGTAGCAAAG 1308
Query 1272 AGTAAACTGAACAGGAAACGTGATGATAAAAGTGA-AAAGGTTACTAGGCCTGAAGAGCT 1330
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 1309 AGTAAACTGAACAGGAAACGTGATGATAAAAATGATAAAG-TTACTAGGCCTGAAGAGCT 1367
Query 1331 TGTTCGATTGTATGACCTTCTATTACAGAATGTCGCTGATCTTTCTGATCTCATTAGCTC 1390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 TGTTCGATTGTATGACCTTCTATTACAGAATGTCGCTGATCTTTCTGATCTCATTAGCTC 1427
Query 1391 TGGAAGAGACAGAAAACCTGAAGAGATTGCCTTTGAAGAAGAGTGTCAGCACAAAAGCTT 1450
|||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1428 TGGAAGAGACAGGAAACCTGAAGAGATTGCCTTTGAAGAAGAGTGTCAGCGCACAAGCTT 1487
Query 1451 GGCCTTCCGTGCTGAAAGGTGCTTCTACTTGGCAAAGTCATATAGTCTAGCTGGAAAGAG 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 GGCCTTCCGTGCTGAAAGGTGCTTCTACTTGGCAAAGTCATATAGTCTAGCTGGAAAGAG 1547
Query 1511 GGCTGAAGCATTCGCCCTGTATTCTCGTGCTCGATCTCTTGCTGAAGATGCCCTGGACAA 1570
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1548 GGCTGAAGCATTCGCCCTGTATTCTCGTGCTCGATCTCTAGCTGAAGATGCCCTGAACAA 1607
Query 1571 GTTTCAAAGCATAGCAAAGAAAGATGAGGGAACAATCCAGGAACTGAAGACACTGATTAA 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1608 GTTTCAAAGCATAGCAAAGAAAGATGAGGGAACAATCCAGGAACTGAAGACACTGATCAA 1667
Query 1631 AGAATGCAGAGCTAATAGCTGCATAGAGCATGCGACCGGGATTATGGAGGAAGAGAGGGT 1690
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 AGAATGCAGAGCTAACAGCTGCATAGAGCATGCGACCGGGATTATGGAGGAAGAGAGGGC 1727
Query 1691 TCCAGAGAATCTGTCGAATAGAATTTCAACTATATCACTAAACGATACAGCTGCGCAGGT 1750
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1728 TCCAGAGAATCTGTCGAATAGAATGTCAACTATATCACTAAACAATACAGCTGCGCAGGT 1787
Query 1751 GGAGGAGAAGTACCTGTTAGACAAACTGGATGTGTATGAATCTGCGGTTGGCGATTCAAA 1810
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1788 GGAGGAGAAGTACCTGTTAGACAAACTGGATGTGTATGAATCTGCGGTTGGGGATTCAAA 1847
Query 1811 CACGAAAACCGCCCCAAAGATTGAACGGTTCCCACCGGCATTCCAATCAATACCGCGTAA 1870
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1848 CACGAAAACAGCCCCAAAGATTGAACGGTTCCCACCGGCATTACAATCTATACCGCGTAA 1907
Query 1871 TCCGATTGTTCTAGACCTTGCCTACCATTGCATCGACTTCCCAGATATTGAAAACAGGAT 1930
||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||
Sbjct 1908 TCCGATTGTTCTAGACCTTGCCTACAACTGCATCGACTTCCCAGTTATTGAAAACAGGAT 1967
Query 1931 GAAGAAAAAAGGAGGAGGCTTCA-TGAGCCGTATTAAT-CTCTGGGGGACAAAGTCCTAA 1988
||||||||||||||| ||| | | ||||| ||| | |||| || | |||| | |
Sbjct 1968 GAAGAAAAAAGGAGGCTTCTTTAGT-AGCCGAATTTCTTCTCTCTGGTA-AAAG-C-T-- 2021
Query 1989 AAACTTTAAACCGGCTTTCTCTCTAAGGTTAAAAAAGAATCTCGGATTCAATCTCCCCTT 2048
|| |||||||||||||||||||||||||||||| |||||||||||| |||||| ||
Sbjct 2022 ----TT-AAACCGGCTTTCTCTCTAAGGTTAAAAAAGGATCTCGGATTCATTCTCCCTTT 2076
Query 2049 TT-TT-ACCAGACTCTGAAACTTGTTGCT-CTTTTT--TAGCTTCTAAAACGAAATGCAT 2103
|| || ||||||||| ||||||||||| | || ||| |||||||| |||||||||||||
Sbjct 2077 TTATTTACCAGACTCAGAAACTTGTTGTTGCTCTTTCGTAGCTTCTGAAACGAAATGCAT 2136
Query 2104 AAGATTTCTGTTAA-TTTATTTTGTCGATTTATCACAGAATCACAATTTAGACATTTTGT 2162
||||||||||||| ||||||||||| | || |||||||||||||||||||||||
Sbjct 2137 GAGATTTCTGTTAAATTTATTTTGTC-A-----CA--GAATCACAATTTAGACATTTTGT 2188
Query 2163 TCTTCCATTTTAGTGACACTTGAAATTTTGGAAATATAGACCAATTTTAATGGT 2216
|||||||||||||||||||||| ||||||||||||| |||||| ||||| ||||
Sbjct 2189 TCTTCCATTTTAGTGACACTTGGAATTTTGGAAATAGAGACCAGTTTTATTGGT 2242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109939193550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5