BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496372
Length=3396
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61990.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 4680 0.0
AT5G61980.1 | Symbols: AGD1 | ARF-GAP domain 1 | chr5:24894472-... 265 2e-69
> AT5G61990.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:24899606-24903117 REVERSE LENGTH=3512
Length=3512
Score = 4680 bits (2534), Expect = 0.0
Identities = 3086/3348 (92%), Gaps = 56/3348 (2%)
Strand=Plus/Plus
Query 1 ATCGGAGATGATGGGATCGACGTTGTTCAGGAAGAGATGTTTGGTCAAGAGAGCGAATTG 60
||||| |||||||||||||| |||||||||||||||| |||||||| |||||||||||
Sbjct 1 ATCGGTGATGATGGGATCGATGTTGTTCAGGAAGAGAACTTTGGTCACGAGAGCGAATTT 60
Query 61 TTTACTTTTCCGGTCGTTTTCCGTTAACAATGAGAAACTTCCCGAAGCATCAGCTGAAAT 120
|||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||
Sbjct 61 TTTACTTTTCCGGTCGTTTTCCGTTAACGTTGAGAAACTTTCCGACGCATCAGCTGAAAT 120
Query 121 AGCGCGAATTCTCAACCAAGGGAACTGGCGTGAGACTCTGGTATCTTCGAATCTTTCAAT 180
|||| |||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 121 AGCGGGAATTCTCAAGCAAGAGAACTGGCGTGACACTCTGGTATCTTCGAATCTTTCAAT 180
Query 181 CGAGATAAACCCAGAAGTAGTTCTCTCCGTTTTACGATCCAAACGCGTCGATGATCCTTC 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 CGAGATAAATCCAGAAGTAGTTCTCTCCGTTTTACGATCCAAACGCGTCGATGATCCCTC 240
Query 241 TAAGCTTTTGAGTTTCTTCAATTTGGTTGATTCTCAAAAAGTCACGGAGCAGAAATTGGA 300
||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||
Sbjct 241 TAAGCTTTTGAGTTTCTTCAACTGGGTCGATTCTCAAAAAGTCACAGAGCAGAAATTGGA 300
Query 301 TTCGTTTTCGTTTCTCGCTTTGGATTTGTGTAATTTCGGTAGTATTGAGAAAGCTCATAG 360
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 301 TTCGTTTTCGTTTCTCGCTTTGGATTTGTGTAATTTCGGTAGTTTTGAGAAAGCTCTTAG 360
Query 361 TGTTGTA-ATCCGGATGATTGAGAGGAAGTGGCCTGTAGCTGAGGTTTGGAGTTCGATTG 419
||||||| | |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 361 TGTTGTAGA-ACGGATGATTGAGAGAAATTGGCCTGTAGCTGAGGTTTGGAGTTCGATTG 419
Query 420 TGAGATGTTCACGAGAGTTTGTGGGAAAGAGTGATGATAGAGTTCTTCTATTTGGGATCT 479
|||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |
Sbjct 420 TGAGATGTTCACAAGAGTTTGTGGGAAAGAGTGATGATGGAG---TTCTATTTGGGATAT 476
Query 480 TGATTGATGGATACACTGAAAAAGGTTTTTTAGAAGAAGCTGTATTTGTGTTTTCTAGCA 539
|| |||||||||||| || |||||| | | ||||||||||||| |||||||||||||||
Sbjct 477 TGTTTGATGGATACATTGCAAAAGGGTATATAGAAGAAGCTGTGTTTGTGTTTTCTAGCT 536
Query 540 CTAAGGATTTGGATTTGGATTTGGTTCCTAGTTTGGCACGATGTAATCATTTGTTGGATG 599
|| | ||| |||||| ||||||||| ||||| |||||||||| |||||||||||
Sbjct 537 CT----A--TGGGTTTGGAATTGGTTCCTCGTTTGTCACGATGTAAAGTTTTGTTGGATG 590
Query 600 CGTTGTTGAAGAGGGATCGTCTGGATTTGTTTTGGGATGTGTATAAGGGGATGGTTGAGA 659
||||||||| | || | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 591 CGTTGTTGAGGTGGAACCGGCTGGATTTGTTTTGGGATGTGTATAAGGGGATGGTTGAGA 650
Query 660 GAAATGTAGTATCTGATGTTCAGAGTTATGAGATGCTGATTGTTGCACATTGTAGGGATG 719
|||||||||||| ||||||| ||| ||| | ||| ||||| |||| |||||||||| ||
Sbjct 651 GAAATGTAGTATTTGATGTTAAGACCTATCATATGTTGATTATTGCTCATTGTAGGGCTG 710
Query 720 GGAATGTTCAGTTGGCAAAAGATGTTCTTCTCAAAACCGAAGAAGAATTCGGGACGGCAA 779
||||||||||||||| |||||||||||| | ||||| ||| |||||||| ||||||| |
Sbjct 711 GGAATGTTCAGTTGGGGAAAGATGTTCTTTTTAAAACGGAAAAAGAATTCAGGACGGCTA 770
Query 780 CGTTGAATGTGGATGAAGCACTTGAGCTGAAGAAGTCGATGAGTTGCAAAGGATTGGTGG 839
| ||||||||||||| ||||||| |||| ||| ||||||||| ||||||||||||||||
Sbjct 771 CTTTGAATGTGGATGGAGCACTTAAGCTTAAGGAGTCGATGATTTGCAAAGGATTGGTGC 830
Query 840 CATCGAGGCAAT-CATACAATTTACTTATAGATGGGTTGTGTAAGCGAAAGAGACTAGAA 898
||| || | || ||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 831 CATTGAAG-TATACATACGATGTACTTATAGATGGGTTGTGTAAGATAAAGAGACTAGAA 889
Query 899 GATGCTAAATCGTTGCTGGTAGAGATGAATAGTGTT-GGTTTGTTTCCTGATGATTTTTC 957
||||||||||||||||||||||||||| ||||| || ||| ||| || |||| || | |
Sbjct 890 GATGCTAAATCGTTGCTGGTAGAGATGGATAGT-TTAGGTGTGTCTCTTGATAATCATAC 948
Query 958 TTATAGTTTACTGATTGATGGTTTACTGAAGGGTAGAAATGCAGATGCTGCGAAGGGACT 1017
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 949 TTATAGTTTACTGATTGATGGCTTACTGAAGGGTAGAAATGCAGATGCTGCGAAAGGACT 1008
Query 1018 AGTCCATGAGATGGTTTCACATGGAT-TTAGCATCGATCCTAAGATGTATGATTATTTTA 1076
|||||||||||||||||||||||| | ||| |||| | ||| | |||||||||| || ||
Sbjct 1009 AGTCCATGAGATGGTTTCACATGG-TATTAACATCAAACCTTATATGTATGATTGTTGTA 1067
Query 1077 TTTGTGTGATGTCAAAGGAAGGGGCGATGGAGAAGGCAAAGGCTCTCTTTGATGGAATGA 1136
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1068 TTTGTGTGATGTCAAAGGAAGGGGTGATGGAGAAGGCAAAGGCTCTCTTTGATGGAATGA 1127
Query 1137 TCGCATCCGGAGTGACACCA-GGTGCTCGGGCTTATGCTAGTTTGATCGAAGGATTCTTT 1195
||||||||||| ||| |||| | |||| ||||||||||||| |||||||||||| || |
Sbjct 1128 TCGCATCCGGACTGATACCACAG-GCTCAGGCTTATGCTAGTCTGATCGAAGGATACTGT 1186
Query 1196 CGAGAAAAGAATGTACTTAAGGGTTATGAGTTACTTGTTGAAATGAAAAAGAGGAACATT 1255
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 CGAGAAAAGAATGTACGTCAGGGTTATGAGTTACTTGTTGAAATGAAAAAGAGGAACATT 1246
Query 1256 GTCATATCTCCATATACTTATGGTACAGCGGTGAAAGGCATGTGTTCTTCTGGGGATCTC 1315
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1247 GTCATATCTCCATATACTTATGGTACAGTGGTGAAAGGCATGTGCTCTTCTGGGGATCTC 1306
Query 1316 GATGGAGCTTATAACATCGTGAAGGAAATGGGTGCAAGTGGTTGCAGACCCAATGTGGTT 1375
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1307 GATGGAGCTTATAACATTGTGAAGGAAATGATTGCAAGTGGTTGCAGACCCAATGTGGTT 1366
Query 1376 ATATATACCACATTGATCAAAACCTTTCTCCAGAAAAGTAGGTTTGGAGATGCAGTGAGG 1435
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1367 ATATATACCACATTGATCAAAACCTTTCTCCAGAATAGTAGGTTTGGAGATGCAATGAGG 1426
Query 1436 GTGTTAAAAGAAATGAAAGAACAAGGAATCGCACCTGACACCTTTTGCTACAATTCCCTT 1495
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1427 GTGTTAAAAGAAATGAAAGAACAAGGAATCGCACCAGACATATTTTGCTACAATTCCCTT 1486
Query 1496 ATAATTGGTCTTTCAAAGGCTaaaaaaaTGGATGAAGCAAGGTCGTTTCTGCTTGAAATG 1555
|||||||| |||||||| ||||||| |||||| ||||||||||| |||||| ||||||||
Sbjct 1487 ATAATTGGCCTTTCAAAAGCTAAAAGAATGGACGAAGCAAGGTCTTTTCTGGTTGAAATG 1546
Query 1556 GTCGAGAACGGATTAAAGCCTGATGCTTTCACCTATGGGGCTTTTATCAGTGGATATATA 1615
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1547 GTCGAGAACGGATTAAAGCCTAATGCTTTCACCTATGGGGCTTTTATCAGTGGATATATA 1606
Query 1616 GAGGCAGGGGAATTTGCATCTGCAGATAAGTATGTGAAAGAGATG-GTGGAATGTGGCGT 1674
|||||| | |||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1607 GAGGCAAGTGAATTTGCATCTGCAGATAAGTATGTGAAAGAGATGCG-GGAATGTGGCGT 1665
Query 1675 AATTCCAAATAAGGTTCTTTGCACGGGTTTGATCAATGAGTATTGCAAAAAGGGGAAAGT 1734
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 ACTTCCAAATAAGGTTCTTTGCACGGGTTTGATCAATGAGTATTGCAAAAAGGGGAAAGT 1725
Query 1735 AATAGAGGCATGTTCAGCAT-TCAGATCCATGGTTGAACAAGGGATCCAGGGGGATGCTA 1793
||||||||| |||||||||| | |||||||||||||| |||||||||| |||||||||||
Sbjct 1726 AATAGAGGCGTGTTCAGCATAT-AGATCCATGGTTGACCAAGGGATCCTGGGGGATGCTA 1784
Query 1794 AAACATACACTGTTCTTATGAATGGTCTTGTTAAAAATGGTAAAGTAAATGATGCCGAAG 1853
||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| |
Sbjct 1785 AAACATACACTGTTCTTATGAATGGTCTTTTTAAAAATGATAAAGTAGATGATGCCGAGG 1844
Query 1854 AGATTTTCCACGAAATGCGTGGAAAGGGTATTGCACCTGATGTATTCTCTTATGGTACTC 1913
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1845 AGATTTTCCGCGAAATGCGTGGGAAGGGTATTGCACCTGATGTATTCTCTTATGGTGTTC 1904
Query 1914 TCATTGATGGATTTTCTAAGTTGGGAAATATGCAGAAGGCTTCTAGTATTTTTGATGAGA 1973
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 TCATTAATGGATTTTCTAAGTTGGGAAATATGCAGAAGGCTTCTAGTATTTTTGATGAGA 1964
Query 1974 TGGTTCAAGCAGGTTTGACTTCTAATGTTATCATATACAACATGTTACTTGGTGGCTTCT 2033
||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1965 TGGTTGAAGAAGGTTTGACTCCTAATGTTATCATATACAACATGTTACTTGGTGGCTTTT 2024
Query 2034 GCAGATCTGGTGAAATCGAAAAAGCTAAGGAACTGCTTGATGAAATGTCAGGTAAAGGTT 2093
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 2025 GCAGATCTGGTGAAATTGAAAAAGCTAAGGAACTGCTTGATGAAATGTCAGTTAAAGGTC 2084
Query 2094 TTCCCCCGAATGCAGTGACCTACTGTACAATGATAGATGGATATTGCAAATCTGGGGATC 2153
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2085 TTCACCCGAATGCAGTGACCTACTGTACAATTATAGATGGATATTGCAAATCTGGGGATC 2144
Query 2154 TGGCTGAGGCTTTTCGGTTATTTGATGAGATGAAACTAAAGGGATTAGTTCCTGATAGTT 2213
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2145 TAGCTGAGGCTTTTCGGTTATTTGATGAGATGAAACTAAAGGGATTAGTTCCTGATAGTT 2204
Query 2214 TTGTGTACACAACACTCGTGGATGGGTGTTGCAGATTGAACGATGTCGAAAGAGCTATAA 2273
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2205 TTGTGTACACAACACTCGTGGATGGGTGTTGCAGATTGAACGATGTGGAAAGAGCTATAA 2264
Query 2274 CCATCTTTGAGACAAACGAGAAGGGTTGTGCTTCTAGTTCCGCCCCTTTCAATGCATTGA 2333
||||||||| ||||||| ||||||| |||||||||||| |||||||||||||||| ||||
Sbjct 2265 CCATCTTTGGGACAAACAAGAAGGGCTGTGCTTCTAGTACCGCCCCTTTCAATGCTTTGA 2324
Query 2334 TGAATTGGGTTTTTAAGTTTGGAAAAACAGAATTAACAACAGACA-TGATAAATCGGCTA 2392
| |||||||||||||||||||||||||||||||||| |||||| | || |||||||||||
Sbjct 2325 TCAATTGGGTTTTTAAGTTTGGAAAAACAGAATTAAAAACAGA-AGTGTTAAATCGGCTA 2383
Query 2393 ATGGATGGGTCGTTTGATAGGTTTGGCAAGCCCAATGATGTAACATACAACATTATGATT 2452
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2384 ATGGATGGGTCGTTTGATAGGTTTGGCAAGCCCAATGACGTAACATACAACATTATGATT 2443
Query 2453 GATTATCTATGTAAGGAAGGAAACTTGGAAGCTGCAAAGGAGCTCTTTCACCACATGCAG 2512
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2444 GATTATCTATGCAAGGAAGGAAACTTGGAAGCTGCAAAGGAGCTCTTTCACCAGATGCAG 2503
Query 2513 AAAGCTAATCTGATGCCTACTGTTATAACTTACACATCTCTTCTAAACGGGTATGATAAA 2572
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2504 AACGCTAATCTGATGCCTACTGTTATAACTTACACATCTCTTCTAAACGGGTATGATAAA 2563
Query 2573 ATGGGTAGAAGATCTGAAATGTTTTCTGTATTTGATGAGGCGATTGCTGCAGGAATTGAA 2632
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2564 ATGGGTAGAAGAGCTGAAATGTTTCCTGTATTTGATGAGGCGATTGCTGCAGGAATTGAA 2623
Query 2633 CCAGACAACGTAATGTATAGTGTTATCATCAATGCTTTCCTGAAAGAAGGGATGACGACA 2692
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2624 CCAGACCACATAATGTATAGTGTTATCATCAATGCTTTCCTGAAAGAAGGGATGACGACA 2683
Query 2693 AAAGCACTTGTGCTTGTGGATCAAATGTTTGCTAAGAACGCTGTTGATGATGGGTGTAAG 2752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2684 AAAGCACTTGTGCTTGTGGATCAAATGTTTGCTAAGAACGCTGTTGATGATGGGTGTAAG 2743
Query 2753 CTAAGTATTTCAACATGCCGGGCTCTACTCTCTGGTTTTGCCAAAGTGGGAGAAATGGAG 2812
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2744 CTAAGTATTTCAACATGCCGGGCTCTACTCTCTGGTTTTGCTAAAGTGGGAGAAATGGAG 2803
Query 2813 GTAGCTGAGAAGGTTGTGGAGAACATGGTTCGACTC-AAGTATATTCCTGATTCTTCGAC 2871
||||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||
Sbjct 2804 GTAGCTGAGAAGGTTATGGAGAACATGGTTCGACTCCAA-TATATTCCTGATTCTGCGAC 2862
Query 2872 TGTTATTGAGTTAATCAATGAAAGTTGCATTTCCTCAAACCAGAGAATGGCAGCTGATGC 2931
|||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||
Sbjct 2863 TGTTATTGAGTTAATCAATGAAAGTTGCATTTCCTCAAACCAAAGAGTGGAAGCTGATGC 2922
Query 2932 AGCTCCTTAGATTTT-TAGACGGAAAGC-----C---T----T-C-TT-TTT--CGTTGT 2973
|| ||| ||| |||| |||||||||||| | | | | || ||| | ||||
Sbjct 2923 AGTTCCATAG-TTTTCTAGACGGAAAGCTAGAGCAGATAAACTTCCTTCTTTTTCTTTGT 2981
Query 2974 GGCTAAAAA-GTTTGGTTTACTGCCAATTTC-TT-GGCCAACATGAAAATTGCTGAAGGT 3030
||||||||| | | | | |||| ||| || || || | ||||| |||| ||
Sbjct 2982 GGCTAAAAACGGA-G-TCTGCTGCT--TTTAGTTTGGTTTACG-GCAAATTTCTGATGGG 3036
Query 3031 TTGCAATTGTGTCAAAAGTTACAAGCTTTATCCTCTCACGTTTGATGATCTCTACGCAGT 3090
|||||||||| ||||| |||||||||||||| |||||| ||||||||||||||| ||||
Sbjct 3037 CTGCAATTGTGGCAAAATTTACAAGCTTTATCATCTCACTTTTGATGATCTCTACTCAGT 3096
Query 3091 CGCAATCTTCTGATATGTCATTGTATATTTTTTCAGTTACCATTAAGAATTTGGAGTTGC 3150
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 3097 CTCAATCTTCTGATATGTCATTGTATATTTTTTCAGTTACCATTAAGAATCTGGAGGTGC 3156
Query 3151 TGTTCCTGAAACAACTTGTGTCTGCTCATAAACTCTTCTGGACCAATTCATTTGCTCCAG 3210
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 3157 TGTTCCTGAAACAATTTGTGTCTGCTCATAAACTCTTCTGGACCAATTCATTTACTTCAG 3216
Query 3211 AACGGATTTGCCTTCAGCTAGACATGTTGGATCTCATTGATTTTACATGGCAGTAGTTTC 3270
||||| ||||||||||||||||||||||||||| ||||||||| |||||| || ||||||
Sbjct 3217 AACGG-TTTGCCTTCAGCTAGACATGTTGGATCCCATTGATTT-ACATGGGAGCAGTTTC 3274
Query 3271 CATTATGATGACGACAATCAGAAGTTGACGATGAAAGGGAGACGCATG 3318
||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 3275 CATTACGATGACGACAATCAGAAGTTGACGATGAAAAGGAGACGCATG 3322
> AT5G61980.1 | Symbols: AGD1 | ARF-GAP domain 1 | chr5:24894472-24899973
FORWARD LENGTH=3282
Length=3282
Score = 265 bits (143), Expect = 2e-69
Identities = 166/177 (94%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 3142 TGGAGTTGCTGTTCCTGAAACAACTTGTGTCTGCTCATAAACTCTTCTGGACCAATTCAT 3201
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3279 TGGAGGTGCTGTTCCTGAAACAATTTGTGTCTGCTCATAAACTCTTCTGGACCAATTCAT 3220
Query 3202 TTGCTCCAGAACGGATTTGCCTTCAGCTAGACATGTTGGATCTCATTGATTTTACATGGC 3261
|| || |||||||| ||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 3219 TTACTTCAGAACGG-TTTGCCTTCAGCTAGACATGTTGGATCCCATTGA-TTTACATGGG 3162
Query 3262 AGTAGTTTCCATTATGATGACGACAATCAGAAGTTGACGATGAAAGGGAGACGCATG 3318
|| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 3161 AGCAGTTTCCATTACGATGACGACAATCAGAAGTTGACGATGAAAAGGAGACGCATG 3105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 169012430967
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5